Wall clock time and date at job start Mon Mar 30 2020 05:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30864 * 1 3 3 Si 1.86803 * 119.99823 * 2 1 4 4 H 1.48508 * 109.46742 * 269.99923 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99780 * 3 2 1 6 6 H 1.48498 * 109.47506 * 150.00018 * 3 2 1 7 7 C 1.39983 * 120.00466 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99973 * 179.97438 * 7 2 1 9 9 C 1.39613 * 119.99493 * 0.28252 * 7 2 1 10 10 N 1.31451 * 125.07873 * 179.72634 * 9 7 2 11 11 C 1.31032 * 117.23410 * 179.97438 * 10 9 7 12 12 C 1.47919 * 122.63110 * 180.02562 * 11 10 9 13 13 C 1.39630 * 120.14705 * 144.70175 * 12 11 10 14 14 C 1.37934 * 119.84812 * 179.76913 * 13 12 11 15 15 C 1.38390 * 120.14913 * 0.50103 * 14 13 12 16 16 C 1.38392 * 120.29837 * 359.74475 * 15 14 13 17 17 C 1.37940 * 120.14235 * 0.02562 * 16 15 14 18 18 C 1.38939 * 114.73476 * 359.97438 * 11 10 9 19 19 N 1.37578 * 125.99862 * 180.02562 * 18 11 10 20 20 S 1.76029 * 125.08501 * 359.41375 * 9 7 2 21 21 H 0.97005 * 120.00142 * 0.02562 * 1 2 3 22 22 H 1.08003 * 120.07482 * 0.02562 * 13 12 11 23 23 H 1.08003 * 119.92265 * 180.26756 * 14 13 12 24 24 H 1.07995 * 119.84874 * 179.77207 * 15 14 13 25 25 H 1.07988 * 119.92489 * 180.02562 * 16 15 14 26 26 H 1.08005 * 120.06492 * 180.02562 * 17 16 15 27 27 H 0.97004 * 120.00499 * 359.97438 * 19 18 11 28 28 H 0.97004 * 120.00095 * 180.02562 * 19 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4901 2.0464 -1.4002 5 1 1.4400 2.6527 0.7000 6 1 3.5402 1.4404 0.7000 7 6 2.0087 -1.2122 0.0005 8 1 3.0887 -1.2121 0.0001 9 6 1.3106 -2.4213 -0.0049 10 7 1.8645 -3.6134 -0.0101 11 6 1.0606 -4.6481 -0.0142 12 6 1.5550 -6.0423 -0.0197 13 6 0.8605 -7.0353 0.6741 14 6 1.3244 -8.3342 0.6609 15 6 2.4810 -8.6522 -0.0292 16 6 3.1769 -7.6719 -0.7147 17 6 2.7214 -6.3699 -0.7135 18 6 -0.2926 -4.3330 -0.0119 19 7 -1.3326 -5.2336 -0.0148 20 16 -0.4427 -2.5774 0.0021 21 1 -0.4850 0.8401 -0.0004 22 1 -0.0402 -6.7876 1.2163 23 1 0.7857 -9.1041 1.1935 24 1 2.8418 -9.6701 -0.0333 25 1 4.0786 -7.9269 -1.2515 26 1 3.2653 -5.6059 -1.2492 27 1 -1.1494 -6.1862 -0.0192 28 1 -2.2492 -4.9161 -0.0133 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083348341.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:03 Heat of formation + Delta-G solvation = 25.017978 kcal Electronic energy + Delta-G solvation = -14611.700880 eV Core-core repulsion = 12138.192554 eV Total energy + Delta-G solvation = -2473.508326 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.33024 -38.62006 -36.21629 -34.93612 -32.15013 -31.67636 -29.83913 -26.78673 -24.57682 -23.31554 -22.78869 -20.38545 -19.59998 -18.36968 -17.49290 -17.26345 -16.56755 -15.92954 -15.47087 -15.30774 -14.67016 -14.52597 -14.23161 -14.11821 -13.53536 -13.36688 -12.95919 -12.62252 -12.31535 -12.01537 -11.92384 -11.84690 -11.24868 -11.11032 -9.97040 -9.78691 -9.67010 -9.00563 -8.78122 -8.37168 -6.28321 0.30368 0.56852 0.87645 1.21426 1.41910 1.53706 1.58831 1.79577 2.21415 2.34013 2.99221 3.35450 3.53611 4.00444 4.14754 4.21399 4.35134 4.64207 4.70018 4.95270 5.09274 5.14596 5.26254 5.42893 5.65971 5.77636 5.87437 6.04755 6.21231 6.49213 6.55550 6.76786 7.09941 7.98919 8.15260 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.038119 B = 0.006443 C = 0.005613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.360867 B = 4344.704628 C = 4986.958758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.023 3.977 3 Si 1.015 2.985 4 H -0.259 1.259 5 H -0.259 1.259 6 H -0.259 1.259 7 C -0.423 4.423 8 H 0.094 0.906 9 C 0.174 3.826 10 N -0.600 5.600 11 C -0.009 4.009 12 C -0.002 4.002 13 C -0.144 4.144 14 C -0.110 4.110 15 C -0.135 4.135 16 C -0.117 4.117 17 C -0.132 4.132 18 C -0.064 4.064 19 N -0.832 5.832 20 S 0.081 5.919 21 H 0.307 0.693 22 H 0.123 0.877 23 H 0.155 0.845 24 H 0.156 0.844 25 H 0.143 0.857 26 H 0.098 0.902 27 H 0.398 0.602 28 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.055 -8.076 0.164 8.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.194 4.194 3 Si 0.834 3.166 4 H -0.183 1.183 5 H -0.183 1.183 6 H -0.183 1.183 7 C -0.466 4.466 8 H 0.112 0.888 9 C -0.086 4.086 10 N -0.322 5.322 11 C -0.144 4.144 12 C -0.004 4.004 13 C -0.163 4.163 14 C -0.128 4.128 15 C -0.153 4.153 16 C -0.135 4.135 17 C -0.151 4.151 18 C -0.289 4.289 19 N -0.381 5.381 20 S 0.330 5.670 21 H 0.121 0.879 22 H 0.140 0.860 23 H 0.172 0.828 24 H 0.173 0.827 25 H 0.161 0.839 26 H 0.116 0.884 27 H 0.231 0.769 28 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -1.537 -7.257 0.177 7.420 hybrid contribution 0.211 -0.084 -0.108 0.252 sum -1.326 -7.341 0.069 7.460 Atomic orbital electron populations 1.68573 1.08702 1.31839 1.36108 1.26987 0.95850 1.05206 0.91329 0.84668 0.78462 0.73707 0.79773 1.18310 1.18304 1.18260 1.19019 0.95602 0.88419 1.43527 0.88767 1.23599 0.90428 0.94551 1.00051 1.66651 1.36275 0.97154 1.32145 1.18891 0.87364 0.93159 1.14969 1.18504 0.95156 0.90165 0.96585 1.21315 1.01114 0.93435 1.00464 1.21369 0.96904 0.95396 0.99127 1.21506 0.95566 1.00258 0.97957 1.21343 1.00529 0.91865 0.99722 1.21276 0.96417 0.97177 1.00271 1.24675 0.91913 0.98075 1.14274 1.40777 1.04445 1.06017 1.86852 1.85212 1.12431 0.92161 1.77195 0.87929 0.85967 0.82784 0.82680 0.83942 0.88420 0.76946 0.77236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.28 10.60 21.84 0.23 -40.05 15 2 C 0.02 1.10 5.49 85.26 0.47 1.57 15 3 Si 1.02 36.57 29.56 68.60 2.03 38.60 15 4 H -0.26 -8.96 7.11 99.48 0.71 -8.25 15 5 H -0.26 -8.62 7.11 99.48 0.71 -7.91 15 6 H -0.26 -9.27 7.11 99.48 0.71 -8.56 15 7 C -0.42 -23.22 9.42 23.03 0.22 -23.00 15 8 H 0.09 5.10 7.85 -2.91 -0.02 5.08 15 9 C 0.17 10.03 7.10 85.08 0.60 10.64 15 10 N -0.60 -34.62 10.40 -183.33 -1.91 -36.53 15 11 C -0.01 -0.48 6.44 42.00 0.27 -0.21 15 12 C 0.00 -0.07 5.75 -20.04 -0.12 -0.18 15 13 C -0.14 -5.02 8.27 22.53 0.19 -4.84 15 14 C -0.11 -2.95 10.03 22.23 0.22 -2.73 15 15 C -0.13 -3.42 10.04 22.34 0.22 -3.19 15 16 C -0.12 -3.55 10.03 22.24 0.22 -3.32 15 17 C -0.13 -5.35 9.66 22.53 0.22 -5.13 15 18 C -0.06 -3.05 7.61 83.96 0.64 -2.41 15 19 N -0.83 -30.53 8.60 -51.82 -0.45 -30.97 15 20 S 0.08 4.16 20.30 -56.49 -1.15 3.01 15 21 H 0.31 13.35 8.30 -92.70 -0.77 12.58 15 22 H 0.12 4.07 6.28 -2.91 -0.02 4.05 15 23 H 0.15 2.90 8.06 -2.91 -0.02 2.88 15 24 H 0.16 2.66 8.06 -2.91 -0.02 2.64 15 25 H 0.14 3.43 8.06 -2.92 -0.02 3.41 15 26 H 0.10 4.33 8.05 -2.91 -0.02 4.31 15 27 H 0.40 12.91 5.92 -92.71 -0.55 12.36 15 28 H 0.40 12.63 8.95 -92.71 -0.83 11.80 15 Total: -1.00 -66.13 260.12 1.76 -64.37 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: -0.16 Total: 34.37 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 3.16 Total: -32.81 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -2.12 Total: -107.55 kcal Atomic # 14 Polarization: 36.57 SS G_CDS: 2.03 Total: 38.60 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.15 Total: 3.01 kcal Total: -66.13 1.76 -64.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083348341.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.389 kcal (2) G-P(sol) polarization free energy of solvation -66.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds