Wall clock time and date at job start Mon Mar 30 2020 05:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00218 * 2 1 4 4 H 1.48500 * 109.47520 * 270.00358 * 3 2 1 5 5 H 1.48504 * 109.47004 * 30.00110 * 3 2 1 6 6 H 1.48494 * 109.47119 * 149.99810 * 3 2 1 7 7 C 1.37880 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99680 * 179.72407 * 7 2 1 9 9 S 1.76199 * 120.00013 * 359.97438 * 7 2 1 10 10 O 1.42104 * 102.99896 * 286.59707 * 9 7 2 11 11 C 1.76201 * 102.99843 * 179.72768 * 9 7 2 12 12 C 1.39371 * 119.50685 * 90.00025 * 11 9 7 13 13 C 1.36093 * 120.98946 * 179.97438 * 12 11 9 14 14 C 1.40533 * 119.65339 * 0.02647 * 13 12 11 15 15 C 1.40545 * 121.28763 * 180.02562 * 14 13 12 16 16 C 1.36095 * 119.65457 * 180.02562 * 15 14 13 17 17 C 1.39370 * 120.99068 * 359.96014 * 16 15 14 18 18 C 1.36093 * 120.98898 * 0.02562 * 17 16 15 19 19 C 1.40548 * 119.65550 * 359.97438 * 18 17 16 20 20 C 1.36094 * 119.50273 * 269.72143 * 11 9 7 21 21 H 0.97000 * 119.99443 * 359.97438 * 1 2 3 22 22 H 1.07998 * 119.50579 * 359.97438 * 12 11 9 23 23 H 1.07995 * 120.17235 * 179.97438 * 13 12 11 24 24 H 1.07997 * 120.16866 * 359.95535 * 15 14 13 25 25 H 1.07997 * 119.50393 * 180.02562 * 16 15 14 26 26 H 1.07996 * 119.50780 * 180.02562 * 17 16 15 27 27 H 1.07999 * 120.17563 * 179.97438 * 18 17 16 28 28 H 1.08000 * 120.17439 * 0.03282 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0050 9 16 1.1235 -2.7200 -0.0005 10 8 0.6217 -2.7994 1.3266 11 6 2.4121 -3.9217 -0.0095 12 6 2.9196 -4.3930 1.2000 13 6 3.9144 -5.3213 1.2283 14 6 4.4404 -5.8137 0.0218 15 6 5.4676 -6.7729 0.0109 16 6 5.9528 -7.2265 -1.1769 17 6 5.4459 -6.7546 -2.3864 18 6 4.4513 -5.8262 -2.4147 19 6 3.9248 -5.3341 -1.2081 20 6 2.8930 -4.3799 -1.1973 21 1 -0.4849 0.8401 0.0004 22 1 2.5174 -4.0159 2.1286 23 1 4.2981 -5.6770 2.1730 24 1 5.8704 -7.1473 0.9404 25 1 6.7418 -7.9639 -1.1824 26 1 5.8484 -7.1314 -3.3150 27 1 4.0685 -5.4693 -3.3594 28 1 2.4873 -4.0085 -2.1267 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084265048.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:54 Heat of formation + Delta-G solvation = -11.489723 kcal Electronic energy + Delta-G solvation = -14563.957517 eV Core-core repulsion = 12056.573347 eV Total energy + Delta-G solvation = -2507.384169 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.85664 -35.99787 -33.73844 -32.84506 -32.37303 -29.84685 -28.79014 -25.80235 -23.17152 -22.56827 -21.56569 -18.27875 -17.16625 -16.72569 -16.11094 -15.32708 -14.75517 -14.31075 -14.04721 -13.49885 -13.29002 -13.05897 -13.03956 -12.46251 -11.81969 -11.65367 -11.22387 -10.99337 -10.91616 -10.81524 -10.53053 -10.45892 -10.25801 -9.64512 -9.06740 -8.49625 -8.24232 -7.56695 -7.04821 -6.36653 -4.84705 0.86024 1.33245 2.41790 3.10363 3.16291 3.21516 3.32083 3.75231 4.18477 4.48230 4.79736 4.89980 5.03942 5.18243 5.40274 5.44365 5.46345 5.62733 5.68485 5.93840 6.04867 6.05762 6.28683 6.39073 6.55672 6.64940 6.68235 6.95176 7.10589 7.14946 7.46572 7.47230 8.20786 9.06838 10.43943 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.034543 B = 0.006302 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.386939 B = 4441.759177 C = 4694.902207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.120 3.880 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.820 4.820 8 H 0.080 0.920 9 S 1.407 4.593 10 O -0.910 6.910 11 C -0.434 4.434 12 C -0.051 4.051 13 C -0.140 4.140 14 C -0.040 4.040 15 C -0.113 4.113 16 C -0.122 4.122 17 C -0.135 4.135 18 C -0.096 4.096 19 C -0.068 4.068 20 C -0.043 4.043 21 H 0.282 0.718 22 H 0.126 0.874 23 H 0.117 0.883 24 H 0.120 0.880 25 H 0.116 0.884 26 H 0.117 0.883 27 H 0.127 0.873 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.144 -10.046 -6.934 14.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.092 4.092 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.961 4.961 8 H 0.098 0.902 9 S 1.604 4.396 10 O -0.905 6.905 11 C -0.524 4.524 12 C -0.070 4.070 13 C -0.159 4.159 14 C -0.040 4.040 15 C -0.131 4.131 16 C -0.140 4.140 17 C -0.153 4.153 18 C -0.114 4.114 19 C -0.069 4.069 20 C -0.062 4.062 21 H 0.092 0.908 22 H 0.143 0.857 23 H 0.135 0.865 24 H 0.138 0.862 25 H 0.134 0.866 26 H 0.135 0.865 27 H 0.145 0.855 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.013 -10.169 -6.892 13.677 hybrid contribution 2.217 1.218 1.827 3.121 sum 8.230 -8.951 -5.065 13.172 Atomic orbital electron populations 1.69842 1.06426 1.29499 1.44115 1.24737 0.94523 0.99868 0.90073 0.86363 0.80239 0.81259 0.78850 1.19383 1.20476 1.19390 1.27457 1.02141 1.05541 1.60920 0.90160 1.67984 0.83566 0.82753 1.05298 1.92794 1.71388 1.85611 1.40682 1.29070 1.14898 1.13079 0.95381 1.20906 0.93561 0.93836 0.98660 1.21015 0.98927 0.99536 0.96451 1.18118 0.96087 0.96480 0.93310 1.20994 0.96723 0.97267 0.98148 1.20742 1.00255 1.00419 0.92630 1.20730 0.98175 0.98741 0.97699 1.21077 0.96513 0.96645 0.97118 1.18301 0.97694 0.98232 0.92683 1.20782 0.93779 0.93846 0.97762 0.90820 0.85654 0.86455 0.86204 0.86616 0.86477 0.85516 0.84653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.92 13.19 55.43 0.73 -23.19 15 2 C 0.12 3.26 5.46 -17.82 -0.10 3.16 15 3 Si 0.91 20.70 29.54 -169.99 -5.02 15.68 15 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 6 H -0.27 -6.27 7.11 56.52 0.40 -5.86 15 7 C -0.82 -22.29 9.34 30.60 0.29 -22.00 15 8 H 0.08 2.18 7.81 -52.49 -0.41 1.77 15 9 S 1.41 33.98 13.35 -107.50 -1.44 32.54 15 10 O -0.91 -27.21 16.41 -35.23 -0.58 -27.79 15 11 C -0.43 -9.29 5.56 -39.93 -0.22 -9.51 15 12 C -0.05 -1.10 9.35 -39.93 -0.37 -1.48 15 13 C -0.14 -2.59 9.77 -39.49 -0.39 -2.98 15 14 C -0.04 -0.69 5.74 -106.83 -0.61 -1.30 15 15 C -0.11 -1.61 9.77 -39.48 -0.39 -1.99 15 16 C -0.12 -1.52 9.95 -39.93 -0.40 -1.92 15 17 C -0.14 -1.67 9.95 -39.93 -0.40 -2.06 15 18 C -0.10 -1.31 9.77 -39.48 -0.39 -1.70 15 19 C -0.07 -1.16 5.74 -106.83 -0.61 -1.77 15 20 C -0.04 -0.76 9.43 -39.49 -0.37 -1.14 15 21 H 0.28 7.17 8.31 -40.82 -0.34 6.83 15 22 H 0.13 2.94 7.25 -52.49 -0.38 2.56 15 23 H 0.12 1.84 8.06 -52.49 -0.42 1.42 15 24 H 0.12 1.42 8.06 -52.49 -0.42 1.00 15 25 H 0.12 1.11 8.06 -52.49 -0.42 0.69 15 26 H 0.12 1.10 8.06 -52.49 -0.42 0.68 15 27 H 0.13 1.40 8.06 -52.49 -0.42 0.97 15 28 H 0.14 1.94 8.06 -52.49 -0.42 1.52 15 LS Contribution 265.37 15.07 4.00 4.00 Total: -1.00 -34.37 265.37 -8.72 -43.10 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -2.46 Total: 0.36 kcal Atomic # 6 Polarization: -40.74 SS G_CDS: -3.96 Total: -44.70 kcal Atomic # 7 Polarization: -23.92 SS G_CDS: 0.73 Total: -23.19 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.58 Total: -27.79 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 33.98 SS G_CDS: -1.44 Total: 32.54 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -34.37 -8.72 -43.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084265048.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.609 kcal (2) G-P(sol) polarization free energy of solvation -34.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds