Wall clock time and date at job start Mon Mar 30 2020 05:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00218 * 2 1 4 4 H 1.48500 * 109.47520 * 270.00358 * 3 2 1 5 5 H 1.48504 * 109.47004 * 30.00110 * 3 2 1 6 6 H 1.48494 * 109.47119 * 149.99810 * 3 2 1 7 7 C 1.37880 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99680 * 179.72407 * 7 2 1 9 9 S 1.76199 * 120.00013 * 359.97438 * 7 2 1 10 10 O 1.42104 * 102.99896 * 286.59707 * 9 7 2 11 11 C 1.76201 * 102.99843 * 179.72768 * 9 7 2 12 12 C 1.39371 * 119.50685 * 90.00025 * 11 9 7 13 13 C 1.36093 * 120.98946 * 179.97438 * 12 11 9 14 14 C 1.40533 * 119.65339 * 0.02647 * 13 12 11 15 15 C 1.40545 * 121.28763 * 180.02562 * 14 13 12 16 16 C 1.36095 * 119.65457 * 180.02562 * 15 14 13 17 17 C 1.39370 * 120.99068 * 359.96014 * 16 15 14 18 18 C 1.36093 * 120.98898 * 0.02562 * 17 16 15 19 19 C 1.40548 * 119.65550 * 359.97438 * 18 17 16 20 20 C 1.36094 * 119.50273 * 269.72143 * 11 9 7 21 21 H 0.97000 * 119.99443 * 359.97438 * 1 2 3 22 22 H 1.07998 * 119.50579 * 359.97438 * 12 11 9 23 23 H 1.07995 * 120.17235 * 179.97438 * 13 12 11 24 24 H 1.07997 * 120.16866 * 359.95535 * 15 14 13 25 25 H 1.07997 * 119.50393 * 180.02562 * 16 15 14 26 26 H 1.07996 * 119.50780 * 180.02562 * 17 16 15 27 27 H 1.07999 * 120.17563 * 179.97438 * 18 17 16 28 28 H 1.08000 * 120.17439 * 0.03282 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0050 9 16 1.1235 -2.7200 -0.0005 10 8 0.6217 -2.7994 1.3266 11 6 2.4121 -3.9217 -0.0095 12 6 2.9196 -4.3930 1.2000 13 6 3.9144 -5.3213 1.2283 14 6 4.4404 -5.8137 0.0218 15 6 5.4676 -6.7729 0.0109 16 6 5.9528 -7.2265 -1.1769 17 6 5.4459 -6.7546 -2.3864 18 6 4.4513 -5.8262 -2.4147 19 6 3.9248 -5.3341 -1.2081 20 6 2.8930 -4.3799 -1.1973 21 1 -0.4849 0.8401 0.0004 22 1 2.5174 -4.0159 2.1286 23 1 4.2981 -5.6770 2.1730 24 1 5.8704 -7.1473 0.9404 25 1 6.7418 -7.9639 -1.1824 26 1 5.8484 -7.1314 -3.3150 27 1 4.0685 -5.4693 -3.3594 28 1 2.4873 -4.0085 -2.1267 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084265048.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:53 Heat of formation + Delta-G solvation = -34.341433 kcal Electronic energy + Delta-G solvation = -14564.948441 eV Core-core repulsion = 12056.573347 eV Total energy + Delta-G solvation = -2508.375094 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.10540 -37.27635 -35.86552 -34.91632 -33.62974 -31.14007 -30.05607 -27.89433 -24.45401 -23.87837 -22.79903 -20.20552 -18.64081 -18.03563 -17.47804 -17.31702 -16.40379 -15.56190 -15.46138 -15.30714 -14.66432 -14.47580 -14.26160 -13.87004 -13.67753 -13.11609 -12.97511 -12.82821 -12.64058 -12.31631 -12.16140 -11.96223 -11.71978 -11.06772 -10.90542 -10.50560 -9.59960 -9.07217 -8.83519 -8.36996 -6.97014 -0.38543 0.01218 1.13984 1.29598 1.33537 1.44064 1.83153 2.11792 2.32014 2.74319 3.16230 3.52858 3.70652 3.94885 3.99180 4.06650 4.29370 4.36427 4.46449 4.54843 4.61635 4.88637 5.05082 5.10797 5.32495 5.36995 5.39496 5.55290 5.64077 5.66021 5.96839 6.08769 6.15248 6.97778 8.41897 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.034543 B = 0.006302 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.386939 B = 4441.759177 C = 4694.902207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.968 3.032 4 H -0.240 1.240 5 H -0.272 1.272 6 H -0.280 1.280 7 C -0.850 4.850 8 H 0.068 0.932 9 S 1.442 4.558 10 O -0.980 6.980 11 C -0.467 4.467 12 C -0.093 4.093 13 C -0.134 4.134 14 C -0.058 4.058 15 C -0.128 4.128 16 C -0.106 4.106 17 C -0.123 4.123 18 C -0.101 4.101 19 C -0.088 4.088 20 C -0.028 4.028 21 H 0.289 0.711 22 H 0.087 0.913 23 H 0.137 0.863 24 H 0.141 0.859 25 H 0.155 0.845 26 H 0.158 0.842 27 H 0.157 0.843 28 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.953 -11.569 -9.713 18.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.790 3.210 4 H -0.163 1.163 5 H -0.197 1.197 6 H -0.206 1.206 7 C -0.989 4.989 8 H 0.087 0.913 9 S 1.643 4.357 10 O -0.975 6.975 11 C -0.561 4.561 12 C -0.113 4.113 13 C -0.153 4.153 14 C -0.058 4.058 15 C -0.146 4.146 16 C -0.124 4.124 17 C -0.141 4.141 18 C -0.119 4.119 19 C -0.089 4.089 20 C -0.047 4.047 21 H 0.099 0.901 22 H 0.105 0.895 23 H 0.155 0.845 24 H 0.158 0.842 25 H 0.172 0.828 26 H 0.176 0.824 27 H 0.174 0.826 28 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 8.786 -11.667 -9.680 17.522 hybrid contribution 1.588 1.406 2.562 3.325 sum 10.374 -10.262 -7.118 16.236 Atomic orbital electron populations 1.69901 1.07642 1.30803 1.44354 1.25642 0.95445 1.03340 0.89457 0.85448 0.78185 0.77099 0.80292 1.16331 1.19661 1.20558 1.27782 1.01815 1.07738 1.61587 0.91304 1.66845 0.83953 0.81740 1.03125 1.92676 1.74529 1.86775 1.43535 1.28346 1.16451 1.14296 0.97010 1.20703 0.96317 0.96848 0.97388 1.21211 0.97481 0.98209 0.98414 1.18450 0.97140 0.97417 0.92770 1.21261 0.96184 0.96855 1.00290 1.21290 0.99756 0.99545 0.91817 1.21286 0.96520 0.96912 0.99394 1.21426 0.96822 0.96852 0.96812 1.18618 0.97703 0.98346 0.94261 1.21196 0.93086 0.92917 0.97510 0.90068 0.89524 0.84475 0.84161 0.82763 0.82438 0.82554 0.81344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.72 13.19 21.45 0.28 -50.44 15 2 C 0.07 3.93 5.46 84.66 0.46 4.39 15 3 Si 0.97 42.76 29.54 68.60 2.03 44.79 15 4 H -0.24 -9.44 7.11 99.48 0.71 -8.73 15 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 15 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 15 7 C -0.85 -48.18 9.34 67.73 0.63 -47.55 15 8 H 0.07 3.92 7.81 -2.91 -0.02 3.89 15 9 S 1.44 74.00 13.35 -56.49 -0.75 73.25 15 10 O -0.98 -63.12 16.41 -148.98 -2.45 -65.56 15 11 C -0.47 -20.98 5.56 22.04 0.12 -20.85 15 12 C -0.09 -4.35 9.35 22.04 0.21 -4.15 15 13 C -0.13 -5.08 9.77 22.33 0.22 -4.86 15 14 C -0.06 -1.91 5.74 -21.30 -0.12 -2.03 15 15 C -0.13 -3.17 9.77 22.33 0.22 -2.95 15 16 C -0.11 -2.04 9.95 22.04 0.22 -1.82 15 17 C -0.12 -2.28 9.95 22.04 0.22 -2.06 15 18 C -0.10 -2.33 9.77 22.33 0.22 -2.11 15 19 C -0.09 -2.82 5.74 -21.30 -0.12 -2.94 15 20 C -0.03 -1.00 9.43 22.33 0.21 -0.79 15 21 H 0.29 14.99 8.31 -92.71 -0.77 14.22 15 22 H 0.09 4.56 7.25 -2.91 -0.02 4.54 15 23 H 0.14 4.38 8.06 -2.91 -0.02 4.35 15 24 H 0.14 2.82 8.06 -2.91 -0.02 2.80 15 25 H 0.15 1.84 8.06 -2.91 -0.02 1.82 15 26 H 0.16 1.74 8.06 -2.91 -0.02 1.72 15 27 H 0.16 2.61 8.06 -2.91 -0.02 2.59 15 28 H 0.17 4.58 8.06 -2.91 -0.02 4.55 15 Total: -1.00 -79.62 265.37 2.76 -76.86 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 1.17 Total: 8.83 kcal Atomic # 6 Polarization: -90.21 SS G_CDS: 2.48 Total: -87.73 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.28 Total: -50.44 kcal Atomic # 8 Polarization: -63.12 SS G_CDS: -2.45 Total: -65.56 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: 74.00 SS G_CDS: -0.75 Total: 73.25 kcal Total: -79.62 2.76 -76.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084265048.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.517 kcal (2) G-P(sol) polarization free energy of solvation -79.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds