Wall clock time and date at job start Mon Mar 30 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99921 * 2 1 4 4 H 1.48503 * 109.47057 * 269.99715 * 3 2 1 5 5 H 1.48501 * 109.47095 * 29.99181 * 3 2 1 6 6 H 1.48495 * 109.47458 * 149.99660 * 3 2 1 7 7 C 1.37876 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00099 * 0.02562 * 7 2 1 9 9 S 1.76205 * 120.00229 * 180.02562 * 7 2 1 10 10 O 1.42100 * 102.99885 * 73.12699 * 9 7 2 11 11 C 1.76198 * 103.00031 * 180.02562 * 9 7 2 12 12 C 1.39375 * 119.50551 * 90.00424 * 11 9 7 13 13 C 1.36093 * 120.98723 * 180.27670 * 12 11 9 14 14 C 1.40545 * 119.65049 * 359.45046 * 13 12 11 15 15 C 1.40535 * 121.28157 * 180.27282 * 14 13 12 16 16 C 1.36091 * 119.65868 * 180.33897 * 15 14 13 17 17 C 1.39375 * 120.98324 * 359.95153 * 16 15 14 18 18 C 1.36093 * 120.99140 * 0.02562 * 17 16 15 19 19 C 1.40540 * 119.65409 * 0.02562 * 18 17 16 20 20 C 1.36092 * 119.50305 * 270.01830 * 11 9 7 21 21 H 0.96992 * 120.00256 * 0.02562 * 1 2 3 22 22 H 1.08002 * 119.50398 * 359.97438 * 12 11 9 23 23 H 1.07991 * 120.17325 * 179.69476 * 13 12 11 24 24 H 1.08001 * 120.17026 * 0.33589 * 15 14 13 25 25 H 1.07998 * 119.50679 * 179.97438 * 16 15 14 26 26 H 1.08001 * 119.50404 * 180.02562 * 17 16 15 27 27 H 1.07998 * 120.17461 * 179.97438 * 18 17 16 28 28 H 1.08004 * 120.17240 * 359.97438 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 16 3.7666 -1.1940 0.0012 10 8 4.0858 -0.7918 1.3262 11 6 4.1630 -2.9108 0.0010 12 6 4.3180 -3.5794 -1.2121 13 6 4.6186 -4.9062 -1.2475 14 6 4.7871 -5.6132 -0.0446 15 6 5.1035 -6.9825 -0.0411 16 6 5.2525 -7.6363 1.1431 17 6 5.0970 -6.9679 2.3562 18 6 4.7912 -5.6422 2.3917 19 6 4.6285 -4.9337 1.1889 20 6 4.3130 -3.5642 1.1853 21 1 -0.4850 0.8400 -0.0004 22 1 4.1929 -3.0374 -2.1379 23 1 4.7309 -5.4122 -2.1949 24 1 5.2276 -7.5133 -0.9735 25 1 5.4952 -8.6887 1.1429 26 1 5.2211 -7.5101 3.2820 27 1 4.6734 -5.1375 3.3391 28 1 4.1900 -3.0330 2.1177 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084265049.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:56 Heat of formation + Delta-G solvation = -1.958917 kcal Electronic energy + Delta-G solvation = -14623.149655 eV Core-core repulsion = 12116.178772 eV Total energy + Delta-G solvation = -2506.970883 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.91549 -36.07114 -34.05880 -32.77300 -32.37412 -29.97547 -28.82915 -25.95985 -23.27923 -22.67345 -21.59306 -18.37654 -17.18324 -16.79030 -16.09267 -15.68526 -14.87281 -14.37729 -14.05332 -13.38226 -13.32995 -13.12638 -12.91767 -12.72036 -12.38776 -11.75223 -11.30636 -11.16986 -10.97363 -10.87475 -10.61432 -10.41816 -10.01892 -9.68197 -9.00603 -8.68160 -8.32679 -7.63571 -7.08700 -6.55135 -4.82492 0.81710 1.25711 2.37537 2.96874 3.07968 3.21100 3.29913 3.59862 4.05726 4.38915 4.74767 4.86214 4.99223 5.01955 5.13399 5.34576 5.45520 5.51763 5.59106 5.84043 5.85641 6.04035 6.23002 6.29591 6.49916 6.59625 6.63935 6.83848 6.99628 7.11737 7.37904 7.71528 8.47494 8.96280 10.56577 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.043745 B = 0.006291 C = 0.006145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.923605 B = 4450.037304 C = 4555.779163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.133 3.867 3 Si 0.812 3.188 4 H -0.251 1.251 5 H -0.261 1.261 6 H -0.224 1.224 7 C -0.815 4.815 8 H 0.095 0.905 9 S 1.343 4.657 10 O -0.919 6.919 11 C -0.422 4.422 12 C -0.047 4.047 13 C -0.138 4.138 14 C -0.038 4.038 15 C -0.114 4.114 16 C -0.119 4.119 17 C -0.134 4.134 18 C -0.095 4.095 19 C -0.067 4.067 20 C -0.037 4.037 21 H 0.274 0.726 22 H 0.133 0.867 23 H 0.124 0.876 24 H 0.123 0.877 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.124 0.876 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.150 -9.190 -4.079 14.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.081 4.081 3 Si 0.633 3.367 4 H -0.175 1.175 5 H -0.185 1.185 6 H -0.146 1.146 7 C -0.956 4.956 8 H 0.113 0.887 9 S 1.544 4.456 10 O -0.914 6.914 11 C -0.514 4.514 12 C -0.066 4.066 13 C -0.157 4.157 14 C -0.038 4.038 15 C -0.132 4.132 16 C -0.137 4.137 17 C -0.152 4.152 18 C -0.113 4.113 19 C -0.068 4.068 20 C -0.056 4.056 21 H 0.085 0.915 22 H 0.151 0.849 23 H 0.142 0.858 24 H 0.141 0.859 25 H 0.136 0.864 26 H 0.136 0.864 27 H 0.142 0.858 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.647 -8.351 -4.043 14.122 hybrid contribution -1.095 -0.581 1.784 2.172 sum 9.552 -8.932 -2.259 13.271 Atomic orbital electron populations 1.70003 1.06707 1.28296 1.43156 1.24588 0.94444 0.98863 0.90207 0.87631 0.83877 0.84535 0.80694 1.17544 1.18469 1.14615 1.27308 1.07848 0.99459 1.61012 0.88696 1.67773 0.90966 0.80612 1.06209 1.92889 1.84025 1.73702 1.40785 1.28185 1.05332 1.22123 0.95789 1.20590 0.94916 0.93998 0.97068 1.21006 1.03076 0.95064 0.96509 1.18138 0.98869 0.93586 0.93248 1.20995 1.00594 0.93384 0.98220 1.20773 1.00709 0.99649 0.92600 1.20746 1.01886 0.94731 0.97855 1.21121 0.98242 0.94583 0.97324 1.18303 1.01186 0.94399 0.92956 1.21117 0.93324 0.92052 0.99087 0.91546 0.84948 0.85766 0.85878 0.86426 0.86390 0.85803 0.84998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.90 13.96 55.43 0.77 -24.13 15 2 C 0.13 3.73 5.47 -17.82 -0.10 3.64 15 3 Si 0.81 19.02 27.42 -169.99 -4.66 14.36 15 4 H -0.25 -5.18 7.11 56.52 0.40 -4.77 15 5 H -0.26 -6.05 7.11 56.52 0.40 -5.65 15 6 H -0.22 -5.36 5.95 56.52 0.34 -5.03 15 7 C -0.82 -22.71 9.88 30.60 0.30 -22.40 15 8 H 0.09 2.90 8.06 -52.48 -0.42 2.48 15 9 S 1.34 30.71 11.84 -107.50 -1.27 29.43 15 10 O -0.92 -25.65 14.96 -35.23 -0.53 -26.17 15 11 C -0.42 -8.81 5.56 -39.93 -0.22 -9.04 15 12 C -0.05 -0.80 9.64 -39.93 -0.38 -1.19 15 13 C -0.14 -2.16 9.77 -39.48 -0.39 -2.55 15 14 C -0.04 -0.64 5.74 -106.83 -0.61 -1.26 15 15 C -0.11 -1.57 9.77 -39.49 -0.39 -1.95 15 16 C -0.12 -1.52 9.95 -39.93 -0.40 -1.91 15 17 C -0.13 -1.82 9.95 -39.93 -0.40 -2.21 15 18 C -0.09 -1.53 9.77 -39.48 -0.39 -1.91 15 19 C -0.07 -1.26 5.74 -106.83 -0.61 -1.87 15 20 C -0.04 -0.79 9.16 -39.49 -0.36 -1.16 15 21 H 0.27 7.34 8.31 -40.82 -0.34 7.00 15 22 H 0.13 1.77 8.06 -52.49 -0.42 1.35 15 23 H 0.12 1.49 8.06 -52.49 -0.42 1.07 15 24 H 0.12 1.33 8.06 -52.49 -0.42 0.90 15 25 H 0.12 1.13 8.06 -52.49 -0.42 0.71 15 26 H 0.12 1.26 8.06 -52.49 -0.42 0.84 15 27 H 0.12 1.83 8.06 -52.49 -0.42 1.41 15 28 H 0.13 3.05 7.23 -52.48 -0.38 2.68 15 LS Contribution 260.67 15.07 3.93 3.93 Total: -1.00 -35.17 260.67 -8.24 -43.41 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -2.54 Total: 2.99 kcal Atomic # 6 Polarization: -39.87 SS G_CDS: -3.94 Total: -43.81 kcal Atomic # 7 Polarization: -24.90 SS G_CDS: 0.77 Total: -24.13 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.53 Total: -26.17 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.66 Total: 14.36 kcal Atomic # 16 Polarization: 30.71 SS G_CDS: -1.27 Total: 29.43 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -35.17 -8.24 -43.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084265049.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.451 kcal (2) G-P(sol) polarization free energy of solvation -35.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds