Wall clock time and date at job start Mon Mar 30 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99921 * 2 1 4 4 H 1.48503 * 109.47057 * 269.99715 * 3 2 1 5 5 H 1.48501 * 109.47095 * 29.99181 * 3 2 1 6 6 H 1.48495 * 109.47458 * 149.99660 * 3 2 1 7 7 C 1.37876 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00099 * 0.02562 * 7 2 1 9 9 S 1.76205 * 120.00229 * 180.02562 * 7 2 1 10 10 O 1.42100 * 102.99885 * 73.12699 * 9 7 2 11 11 C 1.76198 * 103.00031 * 180.02562 * 9 7 2 12 12 C 1.39375 * 119.50551 * 90.00424 * 11 9 7 13 13 C 1.36093 * 120.98723 * 180.27670 * 12 11 9 14 14 C 1.40545 * 119.65049 * 359.45046 * 13 12 11 15 15 C 1.40535 * 121.28157 * 180.27282 * 14 13 12 16 16 C 1.36091 * 119.65868 * 180.33897 * 15 14 13 17 17 C 1.39375 * 120.98324 * 359.95153 * 16 15 14 18 18 C 1.36093 * 120.99140 * 0.02562 * 17 16 15 19 19 C 1.40540 * 119.65409 * 0.02562 * 18 17 16 20 20 C 1.36092 * 119.50305 * 270.01830 * 11 9 7 21 21 H 0.96992 * 120.00256 * 0.02562 * 1 2 3 22 22 H 1.08002 * 119.50398 * 359.97438 * 12 11 9 23 23 H 1.07991 * 120.17325 * 179.69476 * 13 12 11 24 24 H 1.08001 * 120.17026 * 0.33589 * 15 14 13 25 25 H 1.07998 * 119.50679 * 179.97438 * 16 15 14 26 26 H 1.08001 * 119.50404 * 180.02562 * 17 16 15 27 27 H 1.07998 * 120.17461 * 179.97438 * 18 17 16 28 28 H 1.08004 * 120.17240 * 359.97438 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 16 3.7666 -1.1940 0.0012 10 8 4.0858 -0.7918 1.3262 11 6 4.1630 -2.9108 0.0010 12 6 4.3180 -3.5794 -1.2121 13 6 4.6186 -4.9062 -1.2475 14 6 4.7871 -5.6132 -0.0446 15 6 5.1035 -6.9825 -0.0411 16 6 5.2525 -7.6363 1.1431 17 6 5.0970 -6.9679 2.3562 18 6 4.7912 -5.6422 2.3917 19 6 4.6285 -4.9337 1.1889 20 6 4.3130 -3.5642 1.1853 21 1 -0.4850 0.8400 -0.0004 22 1 4.1929 -3.0374 -2.1379 23 1 4.7309 -5.4122 -2.1949 24 1 5.2276 -7.5133 -0.9735 25 1 5.4952 -8.6887 1.1429 26 1 5.2211 -7.5101 3.2820 27 1 4.6734 -5.1375 3.3391 28 1 4.1900 -3.0330 2.1177 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084265049.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:56 Heat of formation + Delta-G solvation = -26.454598 kcal Electronic energy + Delta-G solvation = -14624.211867 eV Core-core repulsion = 12116.178772 eV Total energy + Delta-G solvation = -2508.033095 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.17257 -37.32983 -36.14455 -34.92398 -33.65571 -31.25213 -30.10145 -28.13492 -24.58230 -23.95341 -22.87240 -20.28149 -18.73961 -18.09474 -17.68574 -17.37186 -16.58602 -15.64522 -15.57263 -14.89836 -14.83691 -14.63140 -14.40996 -14.26600 -13.97691 -13.30632 -13.08536 -12.81909 -12.60698 -12.29084 -12.12902 -11.92797 -11.76590 -11.05489 -10.96856 -10.67796 -9.68554 -9.15342 -8.83514 -8.68964 -7.03839 -0.48679 -0.02439 1.04634 1.14931 1.23603 1.42692 1.74708 2.01934 2.12452 2.66694 2.90470 3.21511 3.61465 3.73803 3.96960 4.01618 4.16453 4.29219 4.43964 4.49714 4.56015 4.82105 5.01495 5.05012 5.28617 5.31575 5.45535 5.55224 5.57598 5.60423 5.92813 6.10041 6.16163 6.80097 8.47486 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.043745 B = 0.006291 C = 0.006145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.923605 B = 4450.037304 C = 4555.779163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.076 3.924 3 Si 0.868 3.132 4 H -0.191 1.191 5 H -0.257 1.257 6 H -0.235 1.235 7 C -0.845 4.845 8 H 0.046 0.954 9 S 1.417 4.583 10 O -0.973 6.973 11 C -0.444 4.444 12 C -0.069 4.069 13 C -0.118 4.118 14 C -0.058 4.058 15 C -0.110 4.110 16 C -0.113 4.113 17 C -0.117 4.117 18 C -0.131 4.131 19 C -0.091 4.091 20 C -0.073 4.073 21 H 0.282 0.718 22 H 0.169 0.831 23 H 0.174 0.826 24 H 0.164 0.836 25 H 0.162 0.838 26 H 0.151 0.849 27 H 0.119 0.881 28 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.225 -11.400 -6.188 17.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.134 4.134 3 Si 0.684 3.316 4 H -0.112 1.112 5 H -0.181 1.181 6 H -0.159 1.159 7 C -0.983 4.983 8 H 0.064 0.936 9 S 1.619 4.381 10 O -0.969 6.969 11 C -0.540 4.540 12 C -0.087 4.087 13 C -0.136 4.136 14 C -0.058 4.058 15 C -0.127 4.127 16 C -0.131 4.131 17 C -0.134 4.134 18 C -0.149 4.149 19 C -0.092 4.092 20 C -0.092 4.092 21 H 0.092 0.908 22 H 0.187 0.813 23 H 0.191 0.809 24 H 0.182 0.818 25 H 0.180 0.820 26 H 0.168 0.832 27 H 0.137 0.863 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.689 -10.537 -6.167 17.609 hybrid contribution -1.690 -0.284 2.514 3.043 sum 10.999 -10.821 -3.653 15.856 Atomic orbital electron populations 1.70111 1.08626 1.29903 1.44472 1.25680 0.95415 1.03031 0.89226 0.86799 0.81495 0.79227 0.84095 1.11208 1.18101 1.15859 1.27894 1.11169 0.97838 1.61435 0.93582 1.66639 0.86250 0.81534 1.03652 1.92770 1.83755 1.76768 1.43560 1.27825 1.07644 1.20846 0.97675 1.20972 0.95818 0.95347 0.96593 1.21570 0.99664 0.94279 0.98120 1.18605 0.99032 0.95456 0.92677 1.21458 0.98953 0.91759 1.00551 1.21332 0.98511 1.01650 0.91580 1.21212 0.98686 0.93406 1.00134 1.21255 1.00863 0.96237 0.96558 1.18488 1.02163 0.93250 0.95310 1.21004 0.96244 0.94110 0.97848 0.90831 0.81319 0.80871 0.81808 0.82026 0.83161 0.86330 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.84 13.96 21.45 0.30 -54.54 15 2 C 0.08 4.42 5.47 84.65 0.46 4.89 15 3 Si 0.87 39.41 27.42 68.60 1.88 41.29 15 4 H -0.19 -6.90 7.11 99.48 0.71 -6.19 15 5 H -0.26 -11.45 7.11 99.48 0.71 -10.74 15 6 H -0.24 -11.14 5.95 99.48 0.59 -10.55 15 7 C -0.84 -49.80 9.88 67.73 0.67 -49.13 15 8 H 0.05 3.04 8.06 -2.91 -0.02 3.02 15 9 S 1.42 67.33 11.84 -56.49 -0.67 66.67 15 10 O -0.97 -57.15 14.96 -148.98 -2.23 -59.38 15 11 C -0.44 -19.34 5.56 22.04 0.12 -19.22 15 12 C -0.07 -2.27 9.64 22.04 0.21 -2.06 15 13 C -0.12 -3.33 9.77 22.33 0.22 -3.12 15 14 C -0.06 -1.81 5.74 -21.30 -0.12 -1.93 15 15 C -0.11 -2.48 9.77 22.33 0.22 -2.26 15 16 C -0.11 -2.30 9.95 22.04 0.22 -2.08 15 17 C -0.12 -2.82 9.95 22.04 0.22 -2.60 15 18 C -0.13 -4.28 9.77 22.33 0.22 -4.06 15 19 C -0.09 -3.49 5.74 -21.30 -0.12 -3.61 15 20 C -0.07 -3.36 9.16 22.33 0.20 -3.16 15 21 H 0.28 15.59 8.31 -92.71 -0.77 14.82 15 22 H 0.17 4.14 8.06 -2.91 -0.02 4.12 15 23 H 0.17 3.15 8.06 -2.92 -0.02 3.12 15 24 H 0.16 2.38 8.06 -2.91 -0.02 2.36 15 25 H 0.16 1.96 8.06 -2.91 -0.02 1.93 15 26 H 0.15 2.61 8.06 -2.91 -0.02 2.59 15 27 H 0.12 3.79 8.06 -2.91 -0.02 3.77 15 28 H 0.09 4.85 7.23 -2.91 -0.02 4.83 15 Total: -1.00 -84.08 260.67 2.85 -81.22 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 1.05 Total: 13.07 kcal Atomic # 6 Polarization: -90.86 SS G_CDS: 2.52 Total: -88.34 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.30 Total: -54.54 kcal Atomic # 8 Polarization: -57.15 SS G_CDS: -2.23 Total: -59.38 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 1.88 Total: 41.29 kcal Atomic # 16 Polarization: 67.33 SS G_CDS: -0.67 Total: 66.67 kcal Total: -84.08 2.85 -81.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084265049.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.769 kcal (2) G-P(sol) polarization free energy of solvation -84.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds