Wall clock time and date at job start Mon Mar 30 2020 05:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.36338 * 126.71766 * 194.17246 * 3 2 1 5 5 N 1.36046 * 109.70984 * 179.73448 * 4 3 2 6 6 C 1.37093 * 124.85308 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99489 * 158.50706 * 6 5 4 8 8 C 1.38944 * 120.00133 * 338.50147 * 6 5 4 9 9 N 1.31362 * 119.99948 * 348.91804 * 8 6 5 10 10 Si 1.86800 * 120.00074 * 168.91335 * 8 6 5 11 11 H 1.48502 * 109.46868 * 90.00100 * 10 8 6 12 12 H 1.48494 * 109.47227 * 210.00444 * 10 8 6 13 13 H 1.48500 * 109.46957 * 330.00365 * 10 8 6 14 14 C 1.38312 * 110.29383 * 0.02562 * 5 4 3 15 15 C 1.39019 * 133.15057 * 179.97438 * 14 5 4 16 16 C 1.37911 * 119.96349 * 179.97438 * 15 14 5 17 17 C 1.38661 * 120.62013 * 0.08557 * 16 15 14 18 18 C 1.38024 * 120.26764 * 359.95088 * 17 16 15 19 19 Cl 1.73601 * 120.16881 * 180.02562 * 18 17 16 20 20 C 1.39282 * 119.65672 * 0.02562 * 18 17 16 21 21 H 1.07993 * 125.14690 * 359.77406 * 4 3 2 22 22 H 0.96999 * 119.99667 * 179.97438 * 9 8 6 23 23 H 1.08004 * 120.01850 * 0.02562 * 15 14 5 24 24 H 1.08007 * 119.69406 * 180.02562 * 16 15 14 25 25 H 1.07999 * 119.86675 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3827 1.0606 0.2676 5 7 4.6839 0.6739 0.1759 6 6 5.7618 1.4950 0.3843 7 1 6.7229 1.0711 0.6353 8 6 5.6177 2.8724 0.2725 9 7 4.5195 3.3785 -0.2407 10 14 6.9858 4.0047 0.8521 11 1 7.9244 4.2614 -0.2697 12 1 6.4025 5.2899 1.3135 13 1 7.7181 3.3626 1.9731 14 6 4.7637 -0.6657 -0.1587 15 6 5.8312 -1.5306 -0.3714 16 6 5.5946 -2.8486 -0.7011 17 6 4.2979 -3.3238 -0.8256 18 6 3.2251 -2.4802 -0.6191 19 17 1.6027 -3.0780 -0.7750 20 6 3.4510 -1.1471 -0.2851 21 1 3.0462 2.0564 0.5155 22 1 4.4189 4.3401 -0.3184 23 1 6.8452 -1.1707 -0.2775 24 1 6.4272 -3.5169 -0.8649 25 1 4.1267 -4.3581 -1.0848 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084861687.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:50 Heat of formation + Delta-G solvation = 68.920071 kcal Electronic energy + Delta-G solvation = -14561.675526 eV Core-core repulsion = 11952.194137 eV Total energy + Delta-G solvation = -2609.481389 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 246.025 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.55752 -36.85115 -35.66085 -35.40416 -33.46762 -31.26046 -29.04404 -28.24061 -25.58616 -22.04652 -21.80708 -21.01586 -18.07592 -17.10193 -15.90641 -15.26683 -14.79814 -14.45051 -14.09227 -13.75187 -13.62024 -12.46545 -12.37515 -12.30479 -12.15405 -11.89954 -11.67073 -11.46524 -11.12758 -11.04031 -10.79477 -10.51570 -10.45484 -10.16920 -9.47064 -8.70470 -7.60734 -7.20873 -6.92105 -4.68421 1.61544 2.13876 2.75331 2.79145 2.89777 2.94313 3.10867 3.56912 3.70597 4.13588 4.33047 4.65040 4.70857 5.19931 5.46519 5.53776 5.85796 5.99403 6.24181 6.37054 6.53711 6.66071 6.80479 6.96634 7.02846 7.14526 7.45253 7.50135 8.08692 8.51069 8.65039 8.93410 9.95220 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.028022 B = 0.008145 C = 0.006387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.969140 B = 3436.990649 C = 4382.965790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.318 3.682 3 C -0.211 4.211 4 C 0.149 3.851 5 N -0.265 5.265 6 C -0.345 4.345 7 H 0.116 0.884 8 C 0.046 3.954 9 N -0.841 5.841 10 Si 0.945 3.055 11 H -0.269 1.269 12 H -0.274 1.274 13 H -0.261 1.261 14 C 0.060 3.940 15 C -0.089 4.089 16 C -0.130 4.130 17 C -0.139 4.139 18 C -0.005 4.005 19 Cl -0.090 7.090 20 C -0.065 4.065 21 H 0.186 0.814 22 H 0.288 0.712 23 H 0.120 0.880 24 H 0.123 0.877 25 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.998 -4.840 0.465 6.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C 0.006 3.994 3 C -0.222 4.222 4 C 0.004 3.996 5 N 0.076 4.924 6 C -0.472 4.472 7 H 0.133 0.867 8 C -0.165 4.165 9 N -0.471 5.471 10 Si 0.769 3.231 11 H -0.194 1.194 12 H -0.198 1.198 13 H -0.185 1.185 14 C -0.048 4.048 15 C -0.108 4.108 16 C -0.150 4.150 17 C -0.159 4.159 18 C -0.032 4.032 19 Cl -0.061 7.061 20 C -0.072 4.072 21 H 0.202 0.798 22 H 0.099 0.901 23 H 0.138 0.862 24 H 0.141 0.859 25 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.323 -4.463 0.444 5.582 hybrid contribution 0.885 0.581 0.052 1.060 sum 4.208 -3.882 0.496 5.746 Atomic orbital electron populations 1.81067 1.11985 1.09260 1.14518 1.24621 0.91421 0.92108 0.91215 1.15491 0.84241 0.94520 1.27966 1.22169 0.81608 0.98402 0.97449 1.40033 1.05489 1.05086 1.41810 1.19989 0.90445 0.87655 1.49114 0.86664 1.25611 0.98924 0.97877 0.94056 1.69791 1.26592 1.15181 1.35512 0.85615 0.79262 0.78686 0.79544 1.19394 1.19827 1.18522 1.18174 0.93573 0.86358 1.06736 1.20072 0.96988 0.92352 1.01433 1.20448 0.95664 0.94692 1.04244 1.20552 0.91215 0.98840 1.05304 1.20100 0.84688 0.92368 1.06018 1.98322 1.23149 1.88156 1.96459 1.18270 0.92336 0.91108 1.05531 0.79765 0.90142 0.86195 0.85929 0.86097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.20 18.54 41.84 0.78 -10.43 15 2 C 0.32 7.14 14.68 -22.47 -0.33 6.81 15 3 C -0.21 -4.74 6.13 -104.84 -0.64 -5.39 15 4 C 0.15 3.42 9.83 -16.37 -0.16 3.26 15 5 N -0.26 -6.06 2.89 -59.48 -0.17 -6.23 15 6 C -0.34 -7.72 9.89 -14.94 -0.15 -7.87 15 7 H 0.12 2.39 7.86 -52.48 -0.41 1.98 15 8 C 0.05 1.01 5.34 -17.49 -0.09 0.91 15 9 N -0.84 -19.32 10.85 55.49 0.60 -18.72 15 10 Si 0.95 16.66 29.57 -169.99 -5.03 11.64 15 11 H -0.27 -4.74 7.11 56.52 0.40 -4.33 15 12 H -0.27 -4.82 7.11 56.52 0.40 -4.42 15 13 H -0.26 -4.50 7.11 56.52 0.40 -4.10 15 14 C 0.06 1.29 6.73 -83.84 -0.56 0.72 15 15 C -0.09 -1.60 9.93 -39.41 -0.39 -1.99 15 16 C -0.13 -2.05 10.01 -39.55 -0.40 -2.45 15 17 C -0.14 -2.31 9.82 -39.50 -0.39 -2.70 15 18 C 0.00 -0.09 6.34 -39.27 -0.25 -0.34 15 19 Cl -0.09 -1.67 27.80 -51.86 -1.44 -3.11 15 20 C -0.07 -1.40 6.22 -104.89 -0.65 -2.06 15 21 H 0.19 4.24 6.34 -52.49 -0.33 3.91 15 22 H 0.29 6.12 8.31 -40.82 -0.34 5.78 15 23 H 0.12 1.94 8.06 -52.48 -0.42 1.52 15 24 H 0.12 1.50 8.06 -52.48 -0.42 1.08 15 25 H 0.12 1.69 8.06 -52.49 -0.42 1.27 15 LS Contribution 252.58 15.07 3.81 3.81 Total: -1.00 -24.84 252.58 -6.62 -31.45 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -1.15 Total: 2.68 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -4.02 Total: -11.09 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 1.21 Total: -35.38 kcal Atomic # 14 Polarization: 16.66 SS G_CDS: -5.03 Total: 11.64 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -1.44 Total: -3.11 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -24.84 -6.62 -31.45 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084861687.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.374 kcal (2) G-P(sol) polarization free energy of solvation -24.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds