Wall clock time and date at job start Mon Mar 30 2020 05:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.36338 * 126.71766 * 194.17246 * 3 2 1 5 5 N 1.36046 * 109.70984 * 179.73448 * 4 3 2 6 6 C 1.37093 * 124.85308 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99489 * 158.50706 * 6 5 4 8 8 C 1.38944 * 120.00133 * 338.50147 * 6 5 4 9 9 N 1.31362 * 119.99948 * 348.91804 * 8 6 5 10 10 Si 1.86800 * 120.00074 * 168.91335 * 8 6 5 11 11 H 1.48502 * 109.46868 * 90.00100 * 10 8 6 12 12 H 1.48494 * 109.47227 * 210.00444 * 10 8 6 13 13 H 1.48500 * 109.46957 * 330.00365 * 10 8 6 14 14 C 1.38312 * 110.29383 * 0.02562 * 5 4 3 15 15 C 1.39019 * 133.15057 * 179.97438 * 14 5 4 16 16 C 1.37911 * 119.96349 * 179.97438 * 15 14 5 17 17 C 1.38661 * 120.62013 * 0.08557 * 16 15 14 18 18 C 1.38024 * 120.26764 * 359.95088 * 17 16 15 19 19 Cl 1.73601 * 120.16881 * 180.02562 * 18 17 16 20 20 C 1.39282 * 119.65672 * 0.02562 * 18 17 16 21 21 H 1.07993 * 125.14690 * 359.77406 * 4 3 2 22 22 H 0.96999 * 119.99667 * 179.97438 * 9 8 6 23 23 H 1.08004 * 120.01850 * 0.02562 * 15 14 5 24 24 H 1.08007 * 119.69406 * 180.02562 * 16 15 14 25 25 H 1.07999 * 119.86675 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3827 1.0606 0.2676 5 7 4.6839 0.6739 0.1759 6 6 5.7618 1.4950 0.3843 7 1 6.7229 1.0711 0.6353 8 6 5.6177 2.8724 0.2725 9 7 4.5195 3.3785 -0.2407 10 14 6.9858 4.0047 0.8521 11 1 7.9244 4.2614 -0.2697 12 1 6.4025 5.2899 1.3135 13 1 7.7181 3.3626 1.9731 14 6 4.7637 -0.6657 -0.1587 15 6 5.8312 -1.5306 -0.3714 16 6 5.5946 -2.8486 -0.7011 17 6 4.2979 -3.3238 -0.8256 18 6 3.2251 -2.4802 -0.6191 19 17 1.6027 -3.0780 -0.7750 20 6 3.4510 -1.1471 -0.2851 21 1 3.0462 2.0564 0.5155 22 1 4.4189 4.3401 -0.3184 23 1 6.8452 -1.1707 -0.2775 24 1 6.4272 -3.5169 -0.8649 25 1 4.1267 -4.3581 -1.0848 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084861687.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:50 Heat of formation + Delta-G solvation = 58.431069 kcal Electronic energy + Delta-G solvation = -14562.130363 eV Core-core repulsion = 11952.194137 eV Total energy + Delta-G solvation = -2609.936226 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 246.025 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.14221 -38.32871 -37.29934 -36.99662 -35.09665 -32.86768 -30.54198 -29.76915 -27.24606 -23.63163 -23.36794 -22.53414 -19.65160 -18.76419 -17.41618 -16.82251 -16.25515 -16.01708 -15.71501 -15.22000 -15.07467 -14.16109 -14.12995 -13.85044 -13.79752 -13.47183 -13.14146 -12.94765 -12.67285 -12.56224 -12.17764 -11.97115 -11.89693 -11.66059 -11.06190 -10.27396 -9.13351 -8.82726 -8.53589 -6.38243 0.11177 0.68480 1.20663 1.33558 1.45227 1.57460 1.60963 1.91376 2.11516 2.55700 2.73053 2.98918 3.09651 3.54271 4.00576 4.20988 4.46011 4.55810 4.71880 4.89793 5.02461 5.08791 5.19987 5.49856 5.57581 5.61748 5.85561 6.05850 6.41143 6.82102 6.92455 7.28389 8.33336 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.028022 B = 0.008145 C = 0.006387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.969140 B = 3436.990649 C = 4382.965790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.323 3.677 3 C -0.229 4.229 4 C 0.133 3.867 5 N -0.277 5.277 6 C -0.366 4.366 7 H 0.129 0.871 8 C 0.007 3.993 9 N -0.875 5.875 10 Si 1.014 2.986 11 H -0.265 1.265 12 H -0.276 1.276 13 H -0.252 1.252 14 C 0.037 3.963 15 C -0.096 4.096 16 C -0.109 4.109 17 C -0.123 4.123 18 C -0.027 4.027 19 Cl -0.090 7.090 20 C -0.084 4.084 21 H 0.174 0.826 22 H 0.290 0.710 23 H 0.139 0.861 24 H 0.171 0.829 25 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.219 -6.387 0.327 9.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.185 5.185 2 C 0.013 3.987 3 C -0.240 4.240 4 C -0.013 4.013 5 N 0.063 4.937 6 C -0.493 4.493 7 H 0.146 0.854 8 C -0.200 4.200 9 N -0.506 5.506 10 Si 0.834 3.166 11 H -0.190 1.190 12 H -0.201 1.201 13 H -0.175 1.175 14 C -0.071 4.071 15 C -0.116 4.116 16 C -0.129 4.129 17 C -0.142 4.142 18 C -0.054 4.054 19 Cl -0.061 7.061 20 C -0.091 4.091 21 H 0.190 0.810 22 H 0.101 0.899 23 H 0.157 0.843 24 H 0.189 0.811 25 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.548 -6.043 0.301 8.209 hybrid contribution 0.240 0.907 0.048 0.939 sum 5.788 -5.136 0.350 7.746 Atomic orbital electron populations 1.81042 1.12211 1.09829 1.15400 1.24717 0.91504 0.91662 0.90826 1.15594 0.84103 0.95304 1.29023 1.22030 0.82326 0.98176 0.98791 1.40204 1.05341 1.05932 1.42188 1.20455 0.90921 0.88284 1.49624 0.85354 1.26560 1.00953 0.98949 0.93521 1.69890 1.28475 1.15587 1.36613 0.84610 0.76380 0.76398 0.79195 1.19006 1.20064 1.17515 1.18692 0.94675 0.86125 1.07569 1.20473 0.97040 0.92918 1.01165 1.21008 0.96704 0.94162 1.01022 1.21060 0.90706 0.99940 1.02536 1.20361 0.85646 0.92129 1.07271 1.98317 1.23372 1.87906 1.96502 1.18492 0.92296 0.91899 1.06384 0.80956 0.89926 0.84323 0.81141 0.82731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.61 18.54 19.01 0.35 -23.26 15 2 C 0.32 14.96 14.68 88.33 1.30 16.25 15 3 C -0.23 -10.58 6.13 -20.01 -0.12 -10.70 15 4 C 0.13 6.35 9.83 83.60 0.82 7.17 15 5 N -0.28 -12.86 2.89 -342.10 -0.99 -13.85 15 6 C -0.37 -16.41 9.89 84.04 0.83 -15.58 15 7 H 0.13 5.19 7.86 -2.91 -0.02 5.17 15 8 C 0.01 0.32 5.34 84.93 0.45 0.78 15 9 N -0.87 -41.24 10.85 21.66 0.24 -41.00 15 10 Si 1.01 33.59 29.57 68.60 2.03 35.62 15 11 H -0.27 -8.57 7.11 99.48 0.71 -7.87 15 12 H -0.28 -9.13 7.11 99.48 0.71 -8.43 15 13 H -0.25 -7.87 7.11 99.48 0.71 -7.16 15 14 C 0.04 1.55 6.73 38.83 0.26 1.82 15 15 C -0.10 -3.20 9.93 22.38 0.22 -2.98 15 16 C -0.11 -2.93 10.01 22.29 0.22 -2.71 15 17 C -0.12 -3.61 9.82 22.32 0.22 -3.39 15 18 C -0.03 -1.00 6.34 22.47 0.14 -0.86 15 19 Cl -0.09 -3.24 27.80 -2.72 -0.08 -3.32 15 20 C -0.08 -3.61 6.22 -20.04 -0.12 -3.73 15 21 H 0.17 8.45 6.34 -2.91 -0.02 8.43 15 22 H 0.29 12.67 8.31 -92.71 -0.77 11.90 15 23 H 0.14 4.03 8.06 -2.91 -0.02 4.01 15 24 H 0.17 3.01 8.06 -2.91 -0.02 2.99 15 25 H 0.16 3.52 8.06 -2.91 -0.02 3.49 15 Total: -1.00 -54.22 252.58 7.02 -47.20 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 1.24 Total: 12.54 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 4.23 Total: -13.93 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -0.40 Total: -78.11 kcal Atomic # 14 Polarization: 33.59 SS G_CDS: 2.03 Total: 35.62 kcal Atomic # 17 Polarization: -3.24 SS G_CDS: -0.08 Total: -3.32 kcal Total: -54.22 7.02 -47.20 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084861687.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.632 kcal (2) G-P(sol) polarization free energy of solvation -54.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds