Wall clock time and date at job start Mon Mar 30 2020 05:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.36352 * 126.71485 * 218.94744 * 3 2 1 5 5 N 1.36030 * 109.71924 * 179.97438 * 4 3 2 6 6 C 1.37089 * 124.85514 * 179.97438 * 5 4 3 7 7 H 1.07994 * 120.00136 * 201.63564 * 6 5 4 8 8 C 1.38954 * 119.99681 * 21.91938 * 6 5 4 9 9 N 1.31360 * 120.00299 * 10.40825 * 8 6 5 10 10 Si 1.86801 * 119.99756 * 190.41022 * 8 6 5 11 11 H 1.48499 * 109.46895 * 89.99613 * 10 8 6 12 12 H 1.48497 * 109.47151 * 209.99598 * 10 8 6 13 13 H 1.48497 * 109.47126 * 329.99832 * 10 8 6 14 14 C 1.38339 * 110.28956 * 0.27052 * 5 4 3 15 15 C 1.39014 * 133.13241 * 180.45789 * 14 5 4 16 16 C 1.37888 * 119.95174 * 179.57295 * 15 14 5 17 17 C 1.38776 * 120.59602 * 359.70913 * 16 15 14 18 18 Cl 1.73598 * 119.86927 * 179.97438 * 17 16 15 19 19 C 1.38007 * 120.25931 * 0.02604 * 17 16 15 20 20 C 1.39183 * 119.67052 * 359.97418 * 19 17 16 21 21 H 1.08001 * 125.13645 * 359.97438 * 4 3 2 22 22 H 0.96992 * 120.00308 * 180.02562 * 9 8 6 23 23 H 1.08001 * 120.01774 * 359.25503 * 15 14 5 24 24 H 1.08001 * 119.70040 * 179.69106 * 16 15 14 25 25 H 1.07998 * 120.16251 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3828 0.8511 0.6871 5 7 4.6838 0.5421 0.4376 6 6 5.7616 1.2014 0.9696 7 1 6.7234 1.1458 0.4816 8 6 5.6179 1.9363 2.1401 9 7 4.5148 1.8373 2.8466 10 14 6.9932 3.0651 2.7090 11 1 6.7952 4.4177 2.1290 12 1 6.9787 3.1550 4.1912 13 1 8.2991 2.5199 2.2589 14 6 4.7638 -0.5284 -0.4350 15 6 5.8315 -1.2244 -0.9901 16 6 5.5952 -2.2811 -1.8438 17 6 4.2972 -2.6634 -2.1521 18 17 4.0214 -3.9962 -3.2298 19 6 3.2249 -1.9876 -1.6063 20 6 3.4509 -0.9193 -0.7432 21 1 3.0460 1.6493 1.3319 22 1 4.4144 2.3506 3.6634 23 1 6.8453 -0.9344 -0.7567 24 1 6.4277 -2.8159 -2.2766 25 1 2.2155 -2.2867 -1.8470 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084871390.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:52 Heat of formation + Delta-G solvation = 58.788830 kcal Electronic energy + Delta-G solvation = -14383.298148 eV Core-core repulsion = 11773.377435 eV Total energy + Delta-G solvation = -2609.920712 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 246.025 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.15878 -38.44775 -37.31943 -36.92526 -35.04462 -33.02954 -30.57912 -29.78273 -27.21703 -23.67912 -23.48422 -22.46074 -19.63590 -18.76966 -17.59842 -16.79796 -16.44319 -16.01372 -15.68581 -15.15684 -14.80166 -14.25077 -14.19945 -13.89576 -13.84235 -13.54450 -13.28803 -13.04175 -12.68723 -12.57826 -12.23726 -12.05137 -11.76919 -11.55684 -11.02548 -10.47640 -9.01673 -8.87393 -8.58336 -6.38531 0.11866 0.58783 1.20657 1.30528 1.45086 1.57723 1.59650 1.85062 2.10667 2.51396 2.72649 2.98084 3.07568 3.50390 3.87606 4.15666 4.42208 4.59528 4.67626 4.79199 5.01963 5.15125 5.17581 5.41179 5.48234 5.55870 5.87852 5.97038 6.41679 6.77804 6.90898 7.27623 8.33135 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.024350 B = 0.007363 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.632969 B = 3801.698065 C = 4896.681229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C 0.325 3.675 3 C -0.227 4.227 4 C 0.136 3.864 5 N -0.276 5.276 6 C -0.367 4.367 7 H 0.128 0.872 8 C 0.009 3.991 9 N -0.873 5.873 10 Si 1.013 2.987 11 H -0.266 1.266 12 H -0.277 1.277 13 H -0.251 1.251 14 C 0.032 3.968 15 C -0.084 4.084 16 C -0.114 4.114 17 C -0.054 4.054 18 Cl -0.073 7.073 19 C -0.089 4.089 20 C -0.074 4.074 21 H 0.175 0.825 22 H 0.290 0.710 23 H 0.143 0.857 24 H 0.159 0.841 25 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.929 -3.266 -4.963 9.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.188 5.188 2 C 0.015 3.985 3 C -0.239 4.239 4 C -0.011 4.011 5 N 0.064 4.936 6 C -0.493 4.493 7 H 0.146 0.854 8 C -0.199 4.199 9 N -0.504 5.504 10 Si 0.834 3.166 11 H -0.191 1.191 12 H -0.203 1.203 13 H -0.174 1.174 14 C -0.076 4.076 15 C -0.104 4.104 16 C -0.134 4.134 17 C -0.081 4.081 18 Cl -0.045 7.045 19 C -0.109 4.109 20 C -0.080 4.080 21 H 0.192 0.808 22 H 0.101 0.899 23 H 0.161 0.839 24 H 0.177 0.823 25 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.385 -3.168 -4.729 7.835 hybrid contribution 0.436 0.444 0.557 0.835 sum 5.821 -2.724 -4.171 7.661 Atomic orbital electron populations 1.81097 1.12276 1.11999 1.13477 1.24754 0.91440 0.91351 0.90989 1.15578 0.83911 1.08428 1.15955 1.22088 0.82260 0.98600 0.98105 1.40217 1.05410 1.19263 1.28729 1.20470 0.90912 1.29191 1.08775 0.85412 1.26531 1.00988 0.98156 0.94207 1.69868 1.28250 1.37269 1.15054 0.84609 0.77150 0.77469 0.77388 1.19080 1.20258 1.17440 1.18823 0.95416 0.92926 1.00389 1.20198 0.97366 0.95310 0.97538 1.20741 0.95325 0.97853 0.99505 1.20487 0.94516 0.93880 0.99265 1.98314 1.96823 1.45772 1.63558 1.20175 0.98499 0.94832 0.97380 1.18555 0.91614 0.97445 1.00435 0.80825 0.89898 0.83890 0.82306 0.85736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -22.71 18.54 19.00 0.35 -22.36 15 2 C 0.32 14.23 15.86 88.33 1.40 15.63 15 3 C -0.23 -10.02 6.13 -20.01 -0.12 -10.14 15 4 C 0.14 6.26 9.82 83.60 0.82 7.08 15 5 N -0.28 -12.57 2.89 -342.06 -0.99 -13.56 15 6 C -0.37 -16.20 9.89 84.04 0.83 -15.37 15 7 H 0.13 5.13 7.85 -2.91 -0.02 5.10 15 8 C 0.01 0.37 5.35 84.93 0.45 0.82 15 9 N -0.87 -40.41 10.85 21.66 0.23 -40.17 15 10 Si 1.01 33.25 29.57 68.60 2.03 35.28 15 11 H -0.27 -8.60 7.11 99.48 0.71 -7.89 15 12 H -0.28 -9.13 7.11 99.48 0.71 -8.42 15 13 H -0.25 -7.70 7.11 99.48 0.71 -7.00 15 14 C 0.03 1.33 6.73 38.83 0.26 1.59 15 15 C -0.08 -2.85 9.93 22.37 0.22 -2.63 15 16 C -0.11 -3.37 9.80 22.32 0.22 -3.15 15 17 C -0.05 -1.71 6.32 22.34 0.14 -1.57 15 18 Cl -0.07 -1.98 28.95 -2.72 -0.08 -2.06 15 19 C -0.09 -3.25 9.87 22.44 0.22 -3.03 15 20 C -0.07 -3.07 6.34 -20.06 -0.13 -3.20 15 21 H 0.17 8.23 6.34 -2.91 -0.02 8.21 15 22 H 0.29 12.46 8.31 -92.71 -0.77 11.69 15 23 H 0.14 4.23 8.06 -2.91 -0.02 4.21 15 24 H 0.16 3.59 8.06 -2.91 -0.02 3.57 15 25 H 0.12 4.31 8.06 -2.91 -0.02 4.29 15 Total: -1.00 -50.18 254.83 7.11 -43.07 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 1.24 Total: 13.75 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 4.32 Total: -13.97 kcal Atomic # 7 Polarization: -75.68 SS G_CDS: -0.40 Total: -76.08 kcal Atomic # 14 Polarization: 33.25 SS G_CDS: 2.03 Total: 35.28 kcal Atomic # 17 Polarization: -1.98 SS G_CDS: -0.08 Total: -2.06 kcal Total: -50.18 7.11 -43.07 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084871390.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.861 kcal (2) G-P(sol) polarization free energy of solvation -50.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds