Wall clock time and date at job start Mon Mar 30 2020 05:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.36336 * 126.71347 * 155.98897 * 3 2 1 5 5 N 1.36054 * 109.72059 * 179.97438 * 4 3 2 6 6 C 1.37087 * 124.86142 * 179.97438 * 5 4 3 7 7 H 1.07999 * 120.00307 * 201.61532 * 6 5 4 8 8 C 1.38959 * 119.99576 * 21.61542 * 6 5 4 9 9 N 1.31360 * 119.99761 * 10.77690 * 8 6 5 10 10 Si 1.86797 * 119.99924 * 190.77514 * 8 6 5 11 11 H 1.48501 * 109.47042 * 89.99982 * 10 8 6 12 12 H 1.48501 * 109.47161 * 210.00228 * 10 8 6 13 13 H 1.48506 * 109.47114 * 329.99906 * 10 8 6 14 14 C 1.38325 * 110.28860 * 0.02562 * 5 4 3 15 15 C 1.38992 * 133.14717 * 180.02562 * 14 5 4 16 16 C 1.38016 * 119.92336 * 179.97438 * 15 14 5 17 17 Cl 1.73600 * 119.71142 * 179.97438 * 16 15 14 18 18 C 1.38787 * 120.58223 * 0.03626 * 16 15 14 19 19 C 1.37876 * 120.27181 * 359.94657 * 18 16 15 20 20 C 1.39187 * 119.69980 * 0.03358 * 19 18 16 21 21 H 1.08004 * 125.14608 * 359.95413 * 4 3 2 22 22 H 0.97002 * 119.99303 * 180.02562 * 9 8 6 23 23 H 1.07998 * 120.03769 * 359.69598 * 15 14 5 24 24 H 1.07995 * 119.86283 * 179.97438 * 18 16 15 25 25 H 1.08002 * 120.14977 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3826 0.9993 -0.4447 5 7 4.6839 0.6369 -0.2824 6 6 5.7616 1.4108 -0.6273 7 1 6.7237 0.9510 -0.7989 8 6 5.6162 2.7867 -0.7559 9 7 4.5138 3.3718 -0.3461 10 14 6.9884 3.8043 -1.5116 11 1 6.7860 3.8955 -2.9799 12 1 6.9743 5.1681 -0.9242 13 1 8.2958 3.1582 -1.2313 14 6 4.7640 -0.6246 0.2794 15 6 5.8314 -1.4373 0.6425 16 6 5.5940 -2.6793 1.1958 17 17 6.9313 -3.6902 1.6468 18 6 4.2955 -3.1276 1.3936 19 6 3.2248 -2.3345 1.0395 20 6 3.4509 -1.0798 0.4810 21 1 3.0459 1.9365 -0.8630 22 1 4.4122 4.3322 -0.4363 23 1 6.8454 -1.0993 0.4878 24 1 4.1231 -4.1016 1.8271 25 1 2.2152 -2.6852 1.1947 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084872237.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:55 Heat of formation + Delta-G solvation = 68.080800 kcal Electronic energy + Delta-G solvation = -14401.755274 eV Core-core repulsion = 11792.237492 eV Total energy + Delta-G solvation = -2609.517782 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 246.025 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.58167 -37.00985 -35.64038 -35.55726 -33.41053 -31.40685 -29.24131 -28.08747 -25.60747 -22.18787 -21.83923 -20.93091 -18.09369 -17.13006 -15.95081 -15.40663 -14.86984 -14.52033 -14.08782 -13.69693 -13.33017 -12.60946 -12.58962 -12.36998 -12.28674 -12.04589 -11.88077 -11.49609 -11.12546 -10.96747 -10.74077 -10.67885 -10.42475 -10.26607 -9.42225 -8.85970 -7.61527 -7.22983 -6.94626 -4.70247 1.65752 2.01218 2.61861 2.74764 2.89113 2.93967 3.09261 3.53567 3.60680 4.08387 4.34225 4.63157 4.66281 5.15016 5.35721 5.58457 5.83518 6.05211 6.17010 6.35102 6.57122 6.58974 6.81002 6.85298 7.05334 7.12410 7.43852 7.51454 8.07547 8.46054 8.56159 8.90958 9.93507 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.016717 B = 0.009182 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.499402 B = 3048.668150 C = 4670.153612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C 0.318 3.682 3 C -0.219 4.219 4 C 0.151 3.849 5 N -0.264 5.264 6 C -0.345 4.345 7 H 0.116 0.884 8 C 0.047 3.953 9 N -0.841 5.841 10 Si 0.946 3.054 11 H -0.267 1.267 12 H -0.275 1.275 13 H -0.262 1.262 14 C 0.058 3.942 15 C -0.082 4.082 16 C -0.047 4.047 17 Cl -0.095 7.095 18 C -0.142 4.142 19 C -0.078 4.078 20 C -0.064 4.064 21 H 0.186 0.814 22 H 0.288 0.712 23 H 0.125 0.875 24 H 0.122 0.878 25 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.935 -4.785 0.371 6.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.175 5.175 2 C 0.007 3.993 3 C -0.230 4.230 4 C 0.005 3.995 5 N 0.077 4.923 6 C -0.472 4.472 7 H 0.134 0.866 8 C -0.164 4.164 9 N -0.471 5.471 10 Si 0.770 3.230 11 H -0.192 1.192 12 H -0.200 1.200 13 H -0.186 1.186 14 C -0.050 4.050 15 C -0.103 4.103 16 C -0.075 4.075 17 Cl -0.067 7.067 18 C -0.162 4.162 19 C -0.096 4.096 20 C -0.071 4.071 21 H 0.202 0.798 22 H 0.099 0.901 23 H 0.143 0.857 24 H 0.140 0.860 25 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.536 -4.453 0.354 5.697 hybrid contribution 1.184 0.557 -0.158 1.318 sum 4.720 -3.896 0.196 6.123 Atomic orbital electron populations 1.81110 1.12056 1.09947 1.14340 1.24729 0.91456 0.91976 0.91138 1.15550 0.84034 0.98875 1.24515 1.22194 0.81556 0.98226 0.97524 1.40033 1.05522 1.09717 1.37026 1.20038 0.90426 0.89001 1.47771 0.86635 1.25614 0.98977 0.97025 0.94824 1.69784 1.26472 1.12974 1.37845 0.85595 0.79581 0.78486 0.79347 1.19207 1.19966 1.18608 1.18049 0.93821 0.89278 1.03837 1.19696 0.97810 0.91955 1.00835 1.20118 0.87727 0.92664 1.06953 1.98303 1.47587 1.68967 1.91818 1.20474 0.90189 1.00437 1.05081 1.20178 0.97953 0.92539 0.98980 1.18629 0.91473 0.94126 1.02847 0.79769 0.90127 0.85717 0.86045 0.86317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -10.79 18.54 41.84 0.78 -10.01 15 2 C 0.32 6.73 15.86 -22.47 -0.36 6.38 15 3 C -0.22 -4.68 6.13 -104.84 -0.64 -5.32 15 4 C 0.15 3.37 9.83 -16.36 -0.16 3.21 15 5 N -0.26 -5.98 2.89 -59.47 -0.17 -6.16 15 6 C -0.35 -7.75 9.89 -14.93 -0.15 -7.90 15 7 H 0.12 2.44 7.85 -52.49 -0.41 2.03 15 8 C 0.05 1.01 5.35 -17.49 -0.09 0.92 15 9 N -0.84 -19.16 10.85 55.49 0.60 -18.56 15 10 Si 0.95 16.76 29.57 -169.99 -5.03 11.73 15 11 H -0.27 -4.70 7.11 56.52 0.40 -4.30 15 12 H -0.27 -4.88 7.11 56.52 0.40 -4.48 15 13 H -0.26 -4.56 7.11 56.52 0.40 -4.15 15 14 C 0.06 1.24 6.73 -83.83 -0.56 0.68 15 15 C -0.08 -1.56 9.70 -39.38 -0.38 -1.94 15 16 C -0.05 -0.80 6.32 -39.46 -0.25 -1.05 15 17 Cl -0.10 -1.42 28.93 -51.86 -1.50 -2.92 15 18 C -0.14 -2.34 9.81 -39.51 -0.39 -2.73 15 19 C -0.08 -1.39 10.09 -39.36 -0.40 -1.79 15 20 C -0.06 -1.32 6.34 -104.91 -0.67 -1.98 15 21 H 0.19 4.15 6.34 -52.48 -0.33 3.81 15 22 H 0.29 6.08 8.31 -40.82 -0.34 5.74 15 23 H 0.12 2.23 8.06 -52.49 -0.42 1.81 15 24 H 0.12 1.69 8.06 -52.49 -0.42 1.27 15 25 H 0.12 1.91 8.06 -52.49 -0.42 1.49 15 LS Contribution 254.81 15.07 3.84 3.84 Total: -1.00 -23.72 254.81 -6.67 -30.40 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -1.15 Total: 3.21 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -4.05 Total: -11.53 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 1.21 Total: -34.73 kcal Atomic # 14 Polarization: 16.76 SS G_CDS: -5.03 Total: 11.73 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -1.50 Total: -2.92 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -23.72 -6.67 -30.40 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084872237.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.478 kcal (2) G-P(sol) polarization free energy of solvation -23.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds