Wall clock time and date at job start Mon Mar 30 2020 05:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.36336 * 126.71347 * 155.98897 * 3 2 1 5 5 N 1.36054 * 109.72059 * 179.97438 * 4 3 2 6 6 C 1.37087 * 124.86142 * 179.97438 * 5 4 3 7 7 H 1.07999 * 120.00307 * 201.61532 * 6 5 4 8 8 C 1.38959 * 119.99576 * 21.61542 * 6 5 4 9 9 N 1.31360 * 119.99761 * 10.77690 * 8 6 5 10 10 Si 1.86797 * 119.99924 * 190.77514 * 8 6 5 11 11 H 1.48501 * 109.47042 * 89.99982 * 10 8 6 12 12 H 1.48501 * 109.47161 * 210.00228 * 10 8 6 13 13 H 1.48506 * 109.47114 * 329.99906 * 10 8 6 14 14 C 1.38325 * 110.28860 * 0.02562 * 5 4 3 15 15 C 1.38992 * 133.14717 * 180.02562 * 14 5 4 16 16 C 1.38016 * 119.92336 * 179.97438 * 15 14 5 17 17 Cl 1.73600 * 119.71142 * 179.97438 * 16 15 14 18 18 C 1.38787 * 120.58223 * 0.03626 * 16 15 14 19 19 C 1.37876 * 120.27181 * 359.94657 * 18 16 15 20 20 C 1.39187 * 119.69980 * 0.03358 * 19 18 16 21 21 H 1.08004 * 125.14608 * 359.95413 * 4 3 2 22 22 H 0.97002 * 119.99303 * 180.02562 * 9 8 6 23 23 H 1.07998 * 120.03769 * 359.69598 * 15 14 5 24 24 H 1.07995 * 119.86283 * 179.97438 * 18 16 15 25 25 H 1.08002 * 120.14977 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3826 0.9993 -0.4447 5 7 4.6839 0.6369 -0.2824 6 6 5.7616 1.4108 -0.6273 7 1 6.7237 0.9510 -0.7989 8 6 5.6162 2.7867 -0.7559 9 7 4.5138 3.3718 -0.3461 10 14 6.9884 3.8043 -1.5116 11 1 6.7860 3.8955 -2.9799 12 1 6.9743 5.1681 -0.9242 13 1 8.2958 3.1582 -1.2313 14 6 4.7640 -0.6246 0.2794 15 6 5.8314 -1.4373 0.6425 16 6 5.5940 -2.6793 1.1958 17 17 6.9313 -3.6902 1.6468 18 6 4.2955 -3.1276 1.3936 19 6 3.2248 -2.3345 1.0395 20 6 3.4509 -1.0798 0.4810 21 1 3.0459 1.9365 -0.8630 22 1 4.4122 4.3322 -0.4363 23 1 6.8454 -1.0993 0.4878 24 1 4.1231 -4.1016 1.8271 25 1 2.2152 -2.6852 1.1947 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084872237.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:54 Heat of formation + Delta-G solvation = 59.145887 kcal Electronic energy + Delta-G solvation = -14402.142721 eV Core-core repulsion = 11792.237492 eV Total energy + Delta-G solvation = -2609.905229 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 246.025 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.16344 -38.44534 -37.30885 -36.96417 -35.03012 -32.99133 -30.76323 -29.61850 -27.26407 -23.72909 -23.43053 -22.46042 -19.66983 -18.77518 -17.46926 -16.93167 -16.36556 -16.06666 -15.69656 -15.16022 -14.80100 -14.25719 -14.20615 -13.91655 -13.83263 -13.53211 -13.46927 -12.99230 -12.68813 -12.40816 -12.17350 -12.05796 -11.86312 -11.65983 -11.00460 -10.39230 -9.15119 -8.84013 -8.55101 -6.40268 0.14721 0.53631 1.20983 1.26085 1.43669 1.57131 1.58688 1.86436 2.10410 2.50206 2.74343 2.98030 3.07895 3.51465 3.90091 4.19144 4.33865 4.59742 4.66549 4.83690 4.98625 5.04797 5.19273 5.38999 5.52115 5.58964 5.86925 6.00300 6.40729 6.78662 6.90072 7.25663 8.31461 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.016717 B = 0.009182 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.499402 B = 3048.668150 C = 4670.153612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.327 3.673 3 C -0.226 4.226 4 C 0.135 3.865 5 N -0.277 5.277 6 C -0.369 4.369 7 H 0.123 0.877 8 C 0.010 3.990 9 N -0.872 5.872 10 Si 1.012 2.988 11 H -0.264 1.264 12 H -0.275 1.275 13 H -0.254 1.254 14 C 0.037 3.963 15 C -0.094 4.094 16 C -0.041 4.041 17 Cl -0.069 7.069 18 C -0.127 4.127 19 C -0.081 4.081 20 C -0.078 4.078 21 H 0.175 0.825 22 H 0.291 0.709 23 H 0.130 0.870 24 H 0.156 0.844 25 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.035 -6.136 0.773 8.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C 0.017 3.983 3 C -0.237 4.237 4 C -0.011 4.011 5 N 0.063 4.937 6 C -0.496 4.496 7 H 0.140 0.860 8 C -0.197 4.197 9 N -0.503 5.503 10 Si 0.832 3.168 11 H -0.189 1.189 12 H -0.200 1.200 13 H -0.178 1.178 14 C -0.071 4.071 15 C -0.115 4.115 16 C -0.069 4.069 17 Cl -0.040 7.040 18 C -0.147 4.147 19 C -0.099 4.099 20 C -0.084 4.084 21 H 0.192 0.808 22 H 0.102 0.898 23 H 0.148 0.852 24 H 0.174 0.826 25 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.640 -5.833 0.766 7.492 hybrid contribution 0.886 0.819 -0.209 1.224 sum 5.526 -5.014 0.557 7.482 Atomic orbital electron populations 1.81104 1.12223 1.10445 1.14952 1.24681 0.91321 0.91566 0.90757 1.15585 0.83979 0.99257 1.24888 1.22109 0.82084 0.98317 0.98575 1.40185 1.05499 1.10419 1.37647 1.20409 0.90852 0.89680 1.48641 0.85971 1.26503 1.00990 0.97647 0.94593 1.69866 1.28159 1.13384 1.38850 0.84632 0.77065 0.76683 0.78374 1.18885 1.19985 1.17785 1.18433 0.94940 0.89148 1.04560 1.19845 0.97579 0.92588 1.01470 1.20293 0.89033 0.92231 1.05338 1.98317 1.46376 1.67906 1.91433 1.20857 0.89294 1.01296 1.03254 1.20451 0.99528 0.91566 0.98404 1.18873 0.90982 0.95063 1.03524 0.80810 0.89832 0.85205 0.82629 0.84395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -22.02 18.54 19.00 0.35 -21.67 15 2 C 0.33 13.92 15.86 88.33 1.40 15.33 15 3 C -0.23 -9.78 6.13 -20.01 -0.12 -9.90 15 4 C 0.14 6.24 9.83 83.59 0.82 7.06 15 5 N -0.28 -12.86 2.89 -342.06 -0.99 -13.85 15 6 C -0.37 -16.82 9.89 84.04 0.83 -15.99 15 7 H 0.12 5.19 7.85 -2.91 -0.02 5.17 15 8 C 0.01 0.45 5.35 84.94 0.45 0.90 15 9 N -0.87 -40.67 10.85 21.66 0.23 -40.43 15 10 Si 1.01 34.07 29.57 68.60 2.03 36.10 15 11 H -0.26 -8.69 7.11 99.48 0.71 -7.99 15 12 H -0.27 -9.18 7.11 99.48 0.71 -8.47 15 13 H -0.25 -8.15 7.11 99.48 0.71 -7.44 15 14 C 0.04 1.56 6.73 38.83 0.26 1.82 15 15 C -0.09 -3.47 9.70 22.40 0.22 -3.25 15 16 C -0.04 -1.30 6.32 22.35 0.14 -1.16 15 17 Cl -0.07 -1.85 28.93 -2.72 -0.08 -1.92 15 18 C -0.13 -3.79 9.81 22.32 0.22 -3.57 15 19 C -0.08 -2.72 10.09 22.41 0.23 -2.49 15 20 C -0.08 -3.18 6.34 -20.05 -0.13 -3.31 15 21 H 0.17 8.23 6.34 -2.91 -0.02 8.21 15 22 H 0.29 12.55 8.31 -92.71 -0.77 11.78 15 23 H 0.13 4.53 8.06 -2.91 -0.02 4.51 15 24 H 0.16 3.58 8.06 -2.91 -0.02 3.56 15 25 H 0.14 4.08 8.06 -2.91 -0.02 4.05 15 Total: -1.00 -50.06 254.81 7.11 -42.95 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 1.24 Total: 13.38 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: 4.32 Total: -14.56 kcal Atomic # 7 Polarization: -75.55 SS G_CDS: -0.40 Total: -75.95 kcal Atomic # 14 Polarization: 34.07 SS G_CDS: 2.03 Total: 36.10 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.08 Total: -1.92 kcal Total: -50.06 7.11 -42.95 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084872237.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.099 kcal (2) G-P(sol) polarization free energy of solvation -50.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds