Wall clock time and date at job start Mon Mar 30 2020 05:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.36348 * 126.71917 * 346.77849 * 3 2 1 5 5 N 1.36033 * 109.72315 * 180.33599 * 4 3 2 6 6 C 1.37075 * 124.85825 * 179.77624 * 5 4 3 7 7 H 1.07994 * 119.99982 * 204.37675 * 6 5 4 8 8 C 1.38955 * 119.99747 * 24.36712 * 6 5 4 9 9 N 1.31359 * 120.00128 * 9.81022 * 8 6 5 10 10 Si 1.86795 * 119.99848 * 189.80460 * 8 6 5 11 11 H 1.48506 * 109.47443 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47095 * 120.00522 * 10 8 6 13 13 H 1.48505 * 109.47238 * 240.00464 * 10 8 6 14 14 C 1.38328 * 110.28725 * 359.73603 * 5 4 3 15 15 C 1.40423 * 107.44986 * 0.02562 * 14 5 4 16 16 C 1.39176 * 120.10605 * 180.02562 * 15 14 5 17 17 C 1.37935 * 119.70403 * 359.97438 * 16 15 14 18 18 C 1.38622 * 120.29736 * 359.97438 * 17 16 15 19 19 C 1.38067 * 120.59534 * 359.97438 * 18 17 16 20 20 Cl 1.73601 * 120.04538 * 179.97438 * 19 18 17 21 21 H 1.08002 * 125.14141 * 0.03992 * 4 3 2 22 22 H 0.96997 * 120.00284 * 179.97438 * 9 8 6 23 23 H 1.07999 * 120.14764 * 180.02562 * 16 15 14 24 24 H 1.08000 * 119.85166 * 180.02562 * 17 16 15 25 25 H 1.08005 * 119.69637 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3837 -1.0630 0.2500 5 7 4.6844 -0.6736 0.1663 6 6 5.7628 -1.4958 0.3663 7 1 6.7111 -1.0783 0.6704 8 6 5.6355 -2.8667 0.1779 9 7 4.5483 -3.3557 -0.3738 10 14 7.0106 -4.0140 0.7089 11 1 8.1179 -3.2197 1.2992 12 1 6.4942 -4.9706 1.7205 13 1 7.5129 -4.7638 -0.4705 14 6 4.7632 0.6707 -0.1503 15 6 3.4498 1.1524 -0.2716 16 6 3.2228 2.4885 -0.5886 17 6 4.2933 3.3364 -0.7823 18 6 5.5908 2.8634 -0.6621 19 6 5.8302 1.5407 -0.3470 20 17 7.4608 0.9634 -0.2006 21 1 3.0479 -2.0624 0.4841 22 1 4.4596 -4.3126 -0.5057 23 1 2.2129 2.8598 -0.6817 24 1 4.1199 4.3737 -1.0280 25 1 6.4218 3.5360 -0.8154 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084872542.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:56 Heat of formation + Delta-G solvation = 60.798926 kcal Electronic energy + Delta-G solvation = -14644.167138 eV Core-core repulsion = 12034.333590 eV Total energy + Delta-G solvation = -2609.833548 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 246.025 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.13974 -38.23262 -37.36385 -37.09305 -35.02569 -32.79051 -30.52229 -29.86782 -27.16684 -23.63596 -23.39001 -22.52644 -19.70495 -18.71518 -17.49614 -16.76715 -16.28468 -15.95070 -15.74153 -15.24417 -15.05159 -14.23887 -14.16220 -13.92042 -13.70142 -13.39504 -13.21563 -13.04714 -12.80318 -12.43753 -12.14462 -12.13030 -11.92272 -11.25339 -11.04713 -10.23447 -9.08832 -8.82632 -8.53655 -6.35717 0.11337 0.67248 1.19314 1.35127 1.41210 1.55127 1.55649 1.86093 2.10153 2.53192 2.72731 2.99004 3.10384 3.48686 4.00757 4.23789 4.38368 4.55351 4.70464 4.94650 5.00647 5.12832 5.24090 5.47788 5.61749 5.67805 5.86081 6.12209 6.44891 6.78947 6.91946 7.28488 8.35207 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.018128 B = 0.011486 C = 0.007133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.237711 B = 2437.110849 C = 3924.540406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.328 3.672 3 C -0.226 4.226 4 C 0.135 3.865 5 N -0.275 5.275 6 C -0.363 4.363 7 H 0.129 0.871 8 C 0.009 3.991 9 N -0.874 5.874 10 Si 1.000 3.000 11 H -0.255 1.255 12 H -0.266 1.266 13 H -0.271 1.271 14 C 0.028 3.972 15 C -0.073 4.073 16 C -0.093 4.093 17 C -0.123 4.123 18 C -0.112 4.112 19 C -0.032 4.032 20 Cl -0.077 7.077 21 H 0.171 0.829 22 H 0.289 0.711 23 H 0.133 0.867 24 H 0.167 0.833 25 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.123 6.852 0.362 9.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C 0.018 3.982 3 C -0.238 4.238 4 C -0.011 4.011 5 N 0.065 4.935 6 C -0.490 4.490 7 H 0.146 0.854 8 C -0.198 4.198 9 N -0.506 5.506 10 Si 0.821 3.179 11 H -0.178 1.178 12 H -0.191 1.191 13 H -0.196 1.196 14 C -0.080 4.080 15 C -0.080 4.080 16 C -0.112 4.112 17 C -0.142 4.142 18 C -0.132 4.132 19 C -0.060 4.060 20 Cl -0.048 7.048 21 H 0.188 0.812 22 H 0.099 0.901 23 H 0.151 0.849 24 H 0.184 0.816 25 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.761 6.400 0.353 7.984 hybrid contribution 0.884 -1.149 0.073 1.452 sum 5.644 5.251 0.426 7.721 Atomic orbital electron populations 1.81102 1.12178 1.09676 1.15782 1.24655 0.91283 0.91721 0.90577 1.15552 0.83992 0.95029 1.29200 1.22003 0.82210 0.98252 0.98628 1.40168 1.05482 1.05387 1.42429 1.20723 0.92025 0.88692 1.47602 0.85407 1.26459 1.00735 0.99054 0.93563 1.69882 1.28676 1.16000 1.35997 0.84752 0.77225 0.77386 0.78525 1.17819 1.19068 1.19615 1.18432 0.94515 0.86303 1.08730 1.18760 0.89961 0.93909 1.05354 1.20699 1.00355 0.90457 0.99658 1.21099 0.90247 1.00818 1.01996 1.20977 0.99070 0.91562 1.01557 1.20158 0.82929 0.94007 1.08954 1.98302 1.20587 1.89394 1.96535 0.81169 0.90073 0.84938 0.81569 0.82418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -22.20 18.54 19.00 0.35 -21.85 15 2 C 0.33 14.12 15.86 88.33 1.40 15.52 15 3 C -0.23 -9.97 6.13 -20.01 -0.12 -10.09 15 4 C 0.14 6.38 9.79 83.60 0.82 7.20 15 5 N -0.27 -13.12 2.88 -342.02 -0.99 -14.11 15 6 C -0.36 -17.23 9.29 84.05 0.78 -16.45 15 7 H 0.13 5.82 5.59 -2.91 -0.02 5.80 15 8 C 0.01 0.41 5.35 84.94 0.45 0.86 15 9 N -0.87 -42.18 10.96 21.66 0.24 -41.94 15 10 Si 1.00 36.02 29.56 68.60 2.03 38.05 15 11 H -0.25 -8.83 7.11 99.48 0.71 -8.13 15 12 H -0.27 -9.28 7.11 99.48 0.71 -8.57 15 13 H -0.27 -9.63 7.11 99.48 0.71 -8.92 15 14 C 0.03 1.23 6.72 38.85 0.26 1.49 15 15 C -0.07 -3.02 6.34 -20.05 -0.13 -3.15 15 16 C -0.09 -3.07 10.09 22.42 0.23 -2.84 15 17 C -0.12 -3.31 10.03 22.29 0.22 -3.08 15 18 C -0.11 -3.27 9.80 22.32 0.22 -3.05 15 19 C -0.03 -1.20 6.33 22.43 0.14 -1.05 15 20 Cl -0.08 -2.72 26.09 -2.72 -0.07 -2.80 15 21 H 0.17 8.24 6.49 -2.91 -0.02 8.22 15 22 H 0.29 12.88 8.31 -92.71 -0.77 12.11 15 23 H 0.13 3.86 8.06 -2.91 -0.02 3.84 15 24 H 0.17 3.02 8.06 -2.91 -0.02 3.00 15 25 H 0.16 3.54 8.06 -2.91 -0.02 3.51 15 Total: -1.00 -53.51 249.66 7.08 -46.43 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 1.25 Total: 10.87 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: 4.28 Total: -14.65 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -0.40 Total: -77.90 kcal Atomic # 14 Polarization: 36.02 SS G_CDS: 2.03 Total: 38.05 kcal Atomic # 17 Polarization: -2.72 SS G_CDS: -0.07 Total: -2.80 kcal Total: -53.51 7.08 -46.43 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084872542.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.225 kcal (2) G-P(sol) polarization free energy of solvation -53.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds