Wall clock time and date at job start Mon Mar 30 2020 06:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 11 11 O 1.42901 * 109.47641 * 59.99777 * 9 7 2 12 12 C 1.50707 * 109.47007 * 180.02562 * 9 7 2 13 13 C 1.38238 * 119.99651 * 279.72423 * 12 9 7 14 14 C 1.38233 * 119.99654 * 179.78419 * 13 12 9 15 15 C 1.38238 * 120.00019 * 0.44211 * 14 13 12 16 16 C 1.50698 * 119.99791 * 179.82986 * 15 14 13 17 17 F 1.39903 * 109.47285 * 269.97681 * 16 15 14 18 18 F 1.39897 * 109.47295 * 29.98244 * 16 15 14 19 19 F 1.39905 * 109.47036 * 149.97912 * 16 15 14 20 20 C 1.38235 * 120.00016 * 359.81115 * 15 14 13 21 21 C 1.38231 * 119.99912 * 99.99472 * 12 9 7 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 0.96700 * 113.99645 * 59.99567 * 11 9 7 24 24 H 1.07999 * 119.99806 * 359.97438 * 13 12 9 25 25 H 1.07996 * 119.99973 * 180.27268 * 14 13 12 26 26 H 1.07995 * 119.99631 * 179.97438 * 20 15 14 27 27 H 1.07997 * 120.00598 * 359.97438 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8752 -0.6797 -0.8895 11 8 3.9875 -0.5212 1.1674 12 6 4.0139 -2.6150 -0.0013 13 6 4.0532 -3.3353 1.1779 14 6 4.5098 -4.6400 1.1758 15 6 4.9357 -5.2214 -0.0038 16 6 5.4370 -6.6425 -0.0053 17 9 6.8173 -6.6504 0.2231 18 9 4.7931 -7.3653 1.0047 19 9 5.1662 -7.2313 -1.2452 20 6 4.9013 -4.4993 -1.1821 21 6 4.4406 -3.1960 -1.1808 22 1 -0.4850 0.8401 0.0004 23 1 3.7018 -0.9252 1.9982 24 1 3.7242 -2.8796 2.1001 25 1 4.5363 -5.2042 2.0963 26 1 5.2344 -4.9535 -2.1035 27 1 4.4137 -2.6320 -2.1014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085878365.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:30 Heat of formation + Delta-G solvation = -181.474081 kcal Electronic energy + Delta-G solvation = -17432.241994 eV Core-core repulsion = 13932.877138 eV Total energy + Delta-G solvation = -3499.364856 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.06717 -47.58508 -47.53527 -39.25656 -36.14374 -32.45520 -31.80618 -30.76317 -27.92005 -25.42001 -22.80266 -22.46274 -20.49945 -18.41086 -18.31236 -18.24941 -17.56091 -15.90806 -15.17712 -14.93721 -14.62026 -14.33383 -14.28284 -14.00281 -13.78324 -13.70708 -13.50026 -13.27011 -12.93013 -12.83461 -12.65566 -11.89229 -11.43485 -11.18273 -10.93672 -10.81135 -10.05838 -9.48170 -9.02206 -8.80889 -8.74744 -8.37040 -6.27973 -4.42775 1.29334 1.59801 2.79495 3.34354 3.38780 3.49606 3.83977 3.88066 4.16084 4.35671 4.56363 4.97765 5.08016 5.10282 5.39668 5.60828 5.68902 5.76724 6.00824 6.14002 6.43369 6.57058 6.61939 7.10065 7.21588 7.32352 8.10653 8.61025 8.79271 9.32042 10.81582 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.047831 B = 0.005547 C = 0.005483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.249879 B = 5046.256816 C = 5105.388003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.086 3.914 3 Si 0.913 3.087 4 H -0.276 1.276 5 H -0.267 1.267 6 H -0.303 1.303 7 C -0.561 4.561 8 H 0.077 0.923 9 C 0.218 3.782 10 H 0.077 0.923 11 O -0.580 6.580 12 C -0.028 4.028 13 C -0.115 4.115 14 C -0.071 4.071 15 C -0.209 4.209 16 C 0.511 3.489 17 F -0.182 7.182 18 F -0.181 7.181 19 F -0.181 7.181 20 C -0.072 4.072 21 C -0.122 4.122 22 H 0.268 0.732 23 H 0.363 0.637 24 H 0.132 0.868 25 H 0.128 0.872 26 H 0.128 0.872 27 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.236 -9.575 0.385 14.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.120 4.120 3 Si 0.742 3.258 4 H -0.202 1.202 5 H -0.192 1.192 6 H -0.230 1.230 7 C -0.597 4.597 8 H 0.095 0.905 9 C 0.161 3.839 10 H 0.094 0.906 11 O -0.387 6.387 12 C -0.029 4.029 13 C -0.133 4.133 14 C -0.090 4.090 15 C -0.210 4.210 16 C 0.457 3.543 17 F -0.164 7.164 18 F -0.162 7.162 19 F -0.163 7.163 20 C -0.090 4.090 21 C -0.140 4.140 22 H 0.078 0.922 23 H 0.211 0.789 24 H 0.150 0.850 25 H 0.146 0.854 26 H 0.146 0.854 27 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.361 -9.135 -0.066 13.814 hybrid contribution 0.023 0.081 0.346 0.356 sum 10.385 -9.054 0.280 13.780 Atomic orbital electron populations 1.69938 1.06637 1.27794 1.47670 1.25019 0.94728 0.99923 0.92355 0.86258 0.79193 0.81578 0.78766 1.20200 1.19196 1.23050 1.21350 0.88448 0.95230 1.54720 0.90452 1.19151 0.94391 0.83941 0.86443 0.90593 1.86457 1.77556 1.58005 1.16666 1.21275 0.90024 0.98943 0.92633 1.20913 1.00041 0.93304 0.99038 1.20816 0.96329 0.95441 0.96370 1.19758 1.11477 0.92505 0.97309 1.18384 0.75182 0.87519 0.73231 1.93198 1.31755 1.97028 1.94377 1.93165 1.81612 1.80326 1.61119 1.93165 1.93616 1.86131 1.43340 1.20813 0.97454 0.94426 0.96304 1.21026 0.99699 0.94497 0.98750 0.92187 0.78946 0.85028 0.85404 0.85408 0.85022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.78 13.96 55.43 0.77 -25.01 15 2 C 0.09 2.34 5.47 -17.82 -0.10 2.25 15 3 Si 0.91 21.96 26.18 -169.99 -4.45 17.51 15 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 5 H -0.27 -6.31 6.54 56.52 0.37 -5.94 15 6 H -0.30 -7.26 7.11 56.52 0.40 -6.86 15 7 C -0.56 -14.71 9.32 -34.44 -0.32 -15.03 15 8 H 0.08 2.23 7.98 -52.49 -0.42 1.81 15 9 C 0.22 4.79 2.54 -29.03 -0.07 4.72 15 10 H 0.08 1.71 7.06 -51.93 -0.37 1.34 15 11 O -0.58 -12.31 10.89 -35.23 -0.38 -12.69 15 12 C -0.03 -0.53 4.91 -104.62 -0.51 -1.05 15 13 C -0.12 -1.93 9.32 -39.58 -0.37 -2.30 15 14 C -0.07 -1.08 9.40 -39.58 -0.37 -1.45 15 15 C -0.21 -3.15 5.45 -104.62 -0.57 -3.72 15 16 C 0.51 7.07 3.36 36.00 0.12 7.19 15 17 F -0.18 -2.50 17.30 2.25 0.04 -2.46 15 18 F -0.18 -2.50 16.46 2.25 0.04 -2.46 15 19 F -0.18 -2.49 16.46 2.25 0.04 -2.45 15 20 C -0.07 -1.08 9.40 -39.58 -0.37 -1.45 15 21 C -0.12 -2.05 9.67 -39.58 -0.38 -2.43 15 22 H 0.27 7.34 8.31 -40.82 -0.34 7.00 15 23 H 0.36 6.61 7.49 45.56 0.34 6.95 15 24 H 0.13 2.02 6.78 -52.49 -0.36 1.66 15 25 H 0.13 1.63 7.60 -52.49 -0.40 1.23 15 26 H 0.13 1.61 7.60 -52.49 -0.40 1.21 15 27 H 0.13 2.01 8.04 -52.49 -0.42 1.59 15 LS Contribution 251.72 15.07 3.79 3.79 Total: -1.00 -28.99 251.72 -4.29 -33.28 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -1.19 Total: 3.76 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -2.95 Total: -13.26 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.77 Total: -25.01 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.38 Total: -12.69 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 0.11 Total: -7.38 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.45 Total: 17.51 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.99 -4.29 -33.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878365.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.196 kcal (2) G-P(sol) polarization free energy of solvation -28.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds