Wall clock time and date at job start Mon Mar 30 2020 06:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 11 11 O 1.42901 * 109.47641 * 59.99777 * 9 7 2 12 12 C 1.50707 * 109.47007 * 180.02562 * 9 7 2 13 13 C 1.38238 * 119.99651 * 279.72423 * 12 9 7 14 14 C 1.38233 * 119.99654 * 179.78419 * 13 12 9 15 15 C 1.38238 * 120.00019 * 0.44211 * 14 13 12 16 16 C 1.50698 * 119.99791 * 179.82986 * 15 14 13 17 17 F 1.39903 * 109.47285 * 269.97681 * 16 15 14 18 18 F 1.39897 * 109.47295 * 29.98244 * 16 15 14 19 19 F 1.39905 * 109.47036 * 149.97912 * 16 15 14 20 20 C 1.38235 * 120.00016 * 359.81115 * 15 14 13 21 21 C 1.38231 * 119.99912 * 99.99472 * 12 9 7 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 0.96700 * 113.99645 * 59.99567 * 11 9 7 24 24 H 1.07999 * 119.99806 * 359.97438 * 13 12 9 25 25 H 1.07996 * 119.99973 * 180.27268 * 14 13 12 26 26 H 1.07995 * 119.99631 * 179.97438 * 20 15 14 27 27 H 1.07997 * 120.00598 * 359.97438 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8752 -0.6797 -0.8895 11 8 3.9875 -0.5212 1.1674 12 6 4.0139 -2.6150 -0.0013 13 6 4.0532 -3.3353 1.1779 14 6 4.5098 -4.6400 1.1758 15 6 4.9357 -5.2214 -0.0038 16 6 5.4370 -6.6425 -0.0053 17 9 6.8173 -6.6504 0.2231 18 9 4.7931 -7.3653 1.0047 19 9 5.1662 -7.2313 -1.2452 20 6 4.9013 -4.4993 -1.1821 21 6 4.4406 -3.1960 -1.1808 22 1 -0.4850 0.8401 0.0004 23 1 3.7018 -0.9252 1.9982 24 1 3.7242 -2.8796 2.1001 25 1 4.5363 -5.2042 2.0963 26 1 5.2344 -4.9535 -2.1035 27 1 4.4137 -2.6320 -2.1014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085878365.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:30 Heat of formation + Delta-G solvation = -200.041312 kcal Electronic energy + Delta-G solvation = -17433.047129 eV Core-core repulsion = 13932.877138 eV Total energy + Delta-G solvation = -3500.169991 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -51.16316 -48.67875 -48.62499 -40.58305 -37.77680 -34.50454 -33.19127 -32.00573 -29.62437 -26.87336 -24.30810 -23.76816 -21.94150 -19.64412 -19.49756 -19.38857 -19.29871 -17.50143 -16.92865 -16.43989 -15.87944 -15.46608 -15.43253 -15.10697 -15.08078 -14.88049 -14.79332 -14.70580 -14.64658 -14.23805 -14.04697 -13.61799 -13.00229 -12.90091 -12.55371 -12.15882 -11.82457 -11.39850 -10.90072 -10.68406 -9.98300 -9.83865 -8.38785 -6.55855 0.00744 0.35756 1.42662 1.44952 1.58824 1.66591 2.35784 2.55235 2.73490 2.95325 3.04607 3.44831 3.88793 3.91679 3.94147 4.04233 4.42541 4.45604 4.73465 4.88218 5.12421 5.19452 5.24417 5.36968 5.72947 5.83150 6.05009 6.57490 7.04977 7.24377 8.74870 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.047831 B = 0.005547 C = 0.005483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.249879 B = 5046.256816 C = 5105.388003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.035 3.965 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.258 1.258 6 H -0.302 1.302 7 C -0.556 4.556 8 H 0.040 0.960 9 C 0.226 3.774 10 H 0.072 0.928 11 O -0.582 6.582 12 C -0.058 4.058 13 C -0.123 4.123 14 C -0.069 4.069 15 C -0.209 4.209 16 C 0.519 3.481 17 F -0.179 7.179 18 F -0.179 7.179 19 F -0.179 7.179 20 C -0.068 4.068 21 C -0.130 4.130 22 H 0.270 0.730 23 H 0.376 0.624 24 H 0.140 0.860 25 H 0.153 0.847 26 H 0.154 0.846 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.947 -10.204 0.473 15.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.166 4.166 3 Si 0.799 3.201 4 H -0.198 1.198 5 H -0.182 1.182 6 H -0.230 1.230 7 C -0.594 4.594 8 H 0.058 0.942 9 C 0.169 3.831 10 H 0.089 0.911 11 O -0.391 6.391 12 C -0.059 4.059 13 C -0.141 4.141 14 C -0.087 4.087 15 C -0.211 4.211 16 C 0.465 3.535 17 F -0.160 7.160 18 F -0.161 7.161 19 F -0.160 7.160 20 C -0.086 4.086 21 C -0.148 4.148 22 H 0.079 0.921 23 H 0.225 0.775 24 H 0.158 0.842 25 H 0.170 0.830 26 H 0.172 0.828 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 12.089 -9.780 0.029 15.549 hybrid contribution -0.492 0.136 0.338 0.612 sum 11.597 -9.644 0.368 15.087 Atomic orbital electron populations 1.70055 1.08291 1.28661 1.50082 1.25798 0.95257 1.03233 0.92304 0.85319 0.78177 0.77757 0.78832 1.19848 1.18235 1.23047 1.21585 0.90995 0.93491 1.53282 0.94183 1.18847 0.91491 0.86258 0.86508 0.91053 1.86378 1.77243 1.58300 1.17137 1.21082 0.92608 0.97743 0.94445 1.21061 1.00163 0.94081 0.98778 1.21060 0.95298 0.94814 0.97543 1.20005 1.10558 0.93168 0.97352 1.18137 0.75200 0.86825 0.73343 1.93210 1.31491 1.96978 1.94366 1.93174 1.81616 1.80198 1.61062 1.93176 1.93615 1.86014 1.43216 1.21065 0.96447 0.93629 0.97467 1.21193 0.99671 0.95441 0.98480 0.92066 0.77467 0.84197 0.82956 0.82812 0.84078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.55 13.96 21.45 0.30 -55.25 15 2 C 0.04 1.94 5.47 84.66 0.46 2.40 15 3 Si 0.97 45.10 26.18 68.60 1.80 46.90 15 4 H -0.27 -12.43 7.11 99.48 0.71 -11.73 15 5 H -0.26 -11.49 6.54 99.48 0.65 -10.84 15 6 H -0.30 -13.92 7.11 99.48 0.71 -13.21 15 7 C -0.56 -29.58 9.32 25.60 0.24 -29.34 15 8 H 0.04 2.38 7.98 -2.91 -0.02 2.36 15 9 C 0.23 9.83 2.54 29.10 0.07 9.91 15 10 H 0.07 3.14 7.06 -2.38 -0.02 3.13 15 11 O -0.58 -23.89 10.89 -148.98 -1.62 -25.51 15 12 C -0.06 -2.15 4.91 -19.86 -0.10 -2.25 15 13 C -0.12 -3.97 9.32 22.27 0.21 -3.76 15 14 C -0.07 -1.93 9.40 22.27 0.21 -1.72 15 15 C -0.21 -5.75 5.45 -19.87 -0.11 -5.86 15 16 C 0.52 12.87 3.36 71.24 0.24 13.11 15 17 F -0.18 -4.39 17.30 44.97 0.78 -3.61 15 18 F -0.18 -4.45 16.46 44.97 0.74 -3.71 15 19 F -0.18 -4.41 16.46 44.97 0.74 -3.67 15 20 C -0.07 -1.88 9.40 22.27 0.21 -1.67 15 21 C -0.13 -4.18 9.67 22.27 0.22 -3.96 15 22 H 0.27 15.09 8.31 -92.71 -0.77 14.32 15 23 H 0.38 13.22 7.49 -74.06 -0.55 12.67 15 24 H 0.14 4.12 6.78 -2.91 -0.02 4.10 15 25 H 0.15 3.42 7.60 -2.91 -0.02 3.40 15 26 H 0.15 3.38 7.60 -2.91 -0.02 3.36 15 27 H 0.14 4.14 8.04 -2.91 -0.02 4.12 15 Total: -1.00 -61.32 251.72 4.99 -56.33 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.61 Total: 11.66 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 1.65 Total: -23.14 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.30 Total: -55.25 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -1.62 Total: -25.51 kcal Atomic # 9 Polarization: -13.25 SS G_CDS: 2.26 Total: -10.99 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.80 Total: 46.90 kcal Total: -61.32 4.99 -56.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878365.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.714 kcal (2) G-P(sol) polarization free energy of solvation -61.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds