Wall clock time and date at job start Mon Mar 30 2020 06:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 11 11 O 1.42895 * 109.47477 * 300.00091 * 9 7 2 12 12 C 1.50698 * 109.46993 * 179.97438 * 9 7 2 13 13 C 1.38237 * 120.00163 * 84.72584 * 12 9 7 14 14 C 1.38236 * 120.00173 * 179.76622 * 13 12 9 15 15 C 1.38232 * 119.99759 * 0.51168 * 14 13 12 16 16 C 1.50705 * 119.99596 * 179.72238 * 15 14 13 17 17 F 1.39895 * 109.47278 * 270.02144 * 16 15 14 18 18 F 1.39897 * 109.47072 * 30.02063 * 16 15 14 19 19 F 1.39898 * 109.47040 * 150.02132 * 16 15 14 20 20 C 1.38227 * 120.00216 * 359.74551 * 15 14 13 21 21 C 1.38237 * 120.00169 * 359.97438 * 20 15 14 22 22 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 23 23 H 0.96701 * 113.99795 * 300.00251 * 11 9 7 24 24 H 1.08004 * 119.99777 * 0.02562 * 13 12 9 25 25 H 1.08002 * 119.99703 * 180.23035 * 14 13 12 26 26 H 1.08004 * 119.99920 * 179.97438 * 20 15 14 27 27 H 1.07994 * 119.99911 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6206 -2.5586 -0.8820 11 8 0.4344 -2.5725 1.1755 12 6 2.2302 -3.6446 0.0028 13 6 2.7685 -4.0964 1.1932 14 6 3.6631 -5.1503 1.1914 15 6 4.0274 -5.7455 -0.0019 16 6 5.0074 -6.8904 -0.0044 17 9 6.3083 -6.3904 -0.1261 18 9 4.8927 -7.6051 1.1928 19 9 4.7310 -7.7385 -1.0821 20 6 3.4933 -5.2903 -1.1927 21 6 2.5943 -4.2402 -1.1904 22 1 -0.4850 0.8401 0.0004 23 1 0.9300 -2.5255 2.0045 24 1 2.4869 -3.6287 2.1251 25 1 4.0807 -5.5057 2.1218 26 1 3.7783 -5.7551 -2.1250 27 1 2.1773 -3.8843 -2.1209 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085878367.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:32 Heat of formation + Delta-G solvation = -184.709204 kcal Electronic energy + Delta-G solvation = -17393.347123 eV Core-core repulsion = 13893.841982 eV Total energy + Delta-G solvation = -3499.505141 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.03217 -47.55785 -47.49287 -39.12182 -35.74615 -32.31554 -31.63516 -30.65750 -27.52119 -25.27490 -22.88214 -22.40442 -20.49804 -18.37008 -18.23515 -18.20773 -17.13470 -15.81864 -14.98249 -14.75071 -14.58569 -14.27892 -14.22366 -13.97164 -13.74178 -13.67667 -13.66102 -13.13885 -12.82749 -12.49708 -12.40917 -11.52963 -11.21125 -11.04865 -10.98510 -10.77347 -10.30834 -9.46042 -8.85512 -8.67504 -8.58218 -8.22159 -6.16204 -4.36667 1.38868 1.68028 2.83973 3.20364 3.27959 3.30797 3.92673 3.93137 4.20470 4.29919 4.61640 5.08936 5.14597 5.17984 5.56641 5.73505 5.80051 6.10142 6.17686 6.24186 6.52030 6.71783 6.84128 7.22069 7.53759 7.68707 7.93196 8.65679 9.14905 9.39665 10.87240 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.040067 B = 0.005553 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.653728 B = 5041.478763 C = 5222.884425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.081 3.919 3 Si 0.895 3.105 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.569 4.569 8 H 0.060 0.940 9 C 0.254 3.746 10 H 0.073 0.927 11 O -0.558 6.558 12 C -0.034 4.034 13 C -0.120 4.120 14 C -0.072 4.072 15 C -0.214 4.214 16 C 0.511 3.489 17 F -0.182 7.182 18 F -0.182 7.182 19 F -0.182 7.182 20 C -0.073 4.073 21 C -0.123 4.123 22 H 0.264 0.736 23 H 0.347 0.653 24 H 0.130 0.870 25 H 0.126 0.874 26 H 0.126 0.874 27 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.489 -10.421 0.280 12.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.126 4.126 3 Si 0.722 3.278 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.606 4.606 8 H 0.078 0.922 9 C 0.196 3.804 10 H 0.091 0.909 11 O -0.361 6.361 12 C -0.034 4.034 13 C -0.138 4.138 14 C -0.091 4.091 15 C -0.215 4.215 16 C 0.457 3.543 17 F -0.163 7.163 18 F -0.164 7.164 19 F -0.164 7.164 20 C -0.091 4.091 21 C -0.141 4.141 22 H 0.074 0.926 23 H 0.192 0.808 24 H 0.148 0.852 25 H 0.144 0.856 26 H 0.144 0.856 27 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.858 -10.394 -0.175 12.454 hybrid contribution 1.219 0.768 0.316 1.475 sum 8.077 -9.626 0.140 12.567 Atomic orbital electron populations 1.70066 1.05981 1.26906 1.46180 1.25045 0.94766 0.99276 0.93488 0.86568 0.79942 0.82946 0.78379 1.20362 1.20965 1.19665 1.21476 0.93270 0.90217 1.55656 0.92217 1.18632 0.86919 0.87889 0.86941 0.90907 1.86638 1.37967 1.96206 1.15331 1.21770 0.94710 0.94546 0.92380 1.20933 0.97325 0.96490 0.99060 1.20807 0.96658 0.95403 0.96190 1.19721 1.04229 1.00604 0.96936 1.18402 0.80261 0.82522 0.73122 1.93200 1.40072 1.87403 1.95643 1.93156 1.96022 1.80201 1.46981 1.93156 1.93634 1.73246 1.56334 1.20817 0.95792 0.96274 0.96222 1.21034 0.98430 0.95732 0.98882 0.92648 0.80809 0.85178 0.85601 0.85584 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.07 12.85 55.43 0.71 -23.36 15 2 C 0.08 2.16 5.40 -17.82 -0.10 2.06 15 3 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 15 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 15 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 7 C -0.57 -14.74 8.75 -34.44 -0.30 -15.04 15 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 15 9 C 0.25 6.04 3.06 -29.04 -0.09 5.95 15 10 H 0.07 1.88 8.05 -51.93 -0.42 1.46 15 11 O -0.56 -13.50 12.54 -35.23 -0.44 -13.94 15 12 C -0.03 -0.66 4.94 -104.62 -0.52 -1.18 15 13 C -0.12 -2.10 9.33 -39.58 -0.37 -2.47 15 14 C -0.07 -1.13 9.40 -39.58 -0.37 -1.50 15 15 C -0.21 -3.31 5.45 -104.63 -0.57 -3.88 15 16 C 0.51 7.25 3.36 36.01 0.12 7.38 15 17 F -0.18 -2.63 17.30 2.25 0.04 -2.59 15 18 F -0.18 -2.53 16.46 2.25 0.04 -2.49 15 19 F -0.18 -2.53 16.46 2.25 0.04 -2.49 15 20 C -0.07 -1.14 9.40 -39.59 -0.37 -1.51 15 21 C -0.12 -2.16 9.68 -39.58 -0.38 -2.55 15 22 H 0.26 7.02 8.31 -40.82 -0.34 6.68 15 23 H 0.35 7.26 7.39 45.56 0.34 7.60 15 24 H 0.13 2.10 6.62 -52.48 -0.35 1.75 15 25 H 0.13 1.66 7.61 -52.49 -0.40 1.26 15 26 H 0.13 1.66 7.60 -52.48 -0.40 1.26 15 27 H 0.13 2.15 8.06 -52.49 -0.42 1.73 15 LS Contribution 256.62 15.07 3.87 3.87 Total: -1.00 -28.24 256.62 -4.91 -33.15 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -1.19 Total: 5.28 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -2.95 Total: -12.74 kcal Atomic # 7 Polarization: -24.07 SS G_CDS: 0.71 Total: -23.36 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.44 Total: -13.94 kcal Atomic # 9 Polarization: -7.69 SS G_CDS: 0.11 Total: -7.58 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.24 -4.91 -33.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878367.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.555 kcal (2) G-P(sol) polarization free energy of solvation -28.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds