Wall clock time and date at job start Mon Mar 30 2020 06:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 11 11 O 1.42895 * 109.47477 * 300.00091 * 9 7 2 12 12 C 1.50698 * 109.46993 * 179.97438 * 9 7 2 13 13 C 1.38237 * 120.00163 * 84.72584 * 12 9 7 14 14 C 1.38236 * 120.00173 * 179.76622 * 13 12 9 15 15 C 1.38232 * 119.99759 * 0.51168 * 14 13 12 16 16 C 1.50705 * 119.99596 * 179.72238 * 15 14 13 17 17 F 1.39895 * 109.47278 * 270.02144 * 16 15 14 18 18 F 1.39897 * 109.47072 * 30.02063 * 16 15 14 19 19 F 1.39898 * 109.47040 * 150.02132 * 16 15 14 20 20 C 1.38227 * 120.00216 * 359.74551 * 15 14 13 21 21 C 1.38237 * 120.00169 * 359.97438 * 20 15 14 22 22 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 23 23 H 0.96701 * 113.99795 * 300.00251 * 11 9 7 24 24 H 1.08004 * 119.99777 * 0.02562 * 13 12 9 25 25 H 1.08002 * 119.99703 * 180.23035 * 14 13 12 26 26 H 1.08004 * 119.99920 * 179.97438 * 20 15 14 27 27 H 1.07994 * 119.99911 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6206 -2.5586 -0.8820 11 8 0.4344 -2.5725 1.1755 12 6 2.2302 -3.6446 0.0028 13 6 2.7685 -4.0964 1.1932 14 6 3.6631 -5.1503 1.1914 15 6 4.0274 -5.7455 -0.0019 16 6 5.0074 -6.8904 -0.0044 17 9 6.3083 -6.3904 -0.1261 18 9 4.8927 -7.6051 1.1928 19 9 4.7310 -7.7385 -1.0821 20 6 3.4933 -5.2903 -1.1927 21 6 2.5943 -4.2402 -1.1904 22 1 -0.4850 0.8401 0.0004 23 1 0.9300 -2.5255 2.0045 24 1 2.4869 -3.6287 2.1251 25 1 4.0807 -5.5057 2.1218 26 1 3.7783 -5.7551 -2.1250 27 1 2.1773 -3.8843 -2.1209 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085878367.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:32 Heat of formation + Delta-G solvation = -201.897765 kcal Electronic energy + Delta-G solvation = -17394.092475 eV Core-core repulsion = 13893.841982 eV Total energy + Delta-G solvation = -3500.250493 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -51.15202 -48.66348 -48.61664 -40.51092 -37.51636 -34.33105 -33.09069 -31.96851 -29.24100 -26.80847 -24.47204 -23.73416 -21.96749 -19.51222 -19.44321 -19.34225 -19.08179 -17.41453 -16.73173 -16.34902 -15.89001 -15.45682 -15.40008 -15.30221 -15.07957 -14.86693 -14.78213 -14.51795 -14.36995 -14.09983 -13.86597 -13.31524 -12.92918 -12.81868 -12.53531 -12.12324 -12.09648 -11.30988 -10.78553 -10.41987 -9.96566 -9.80159 -8.17364 -6.44505 0.04482 0.37675 1.41055 1.42571 1.52792 1.67937 2.35815 2.62138 2.74978 3.06362 3.08493 3.46387 3.91995 3.95412 4.05268 4.28883 4.46428 4.51951 4.77384 4.94473 5.21013 5.27501 5.31439 5.61837 5.83406 5.88252 5.98966 6.65461 7.27496 7.44685 8.86069 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.040067 B = 0.005553 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.653728 B = 5041.478763 C = 5222.884425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.031 3.969 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.576 4.576 8 H 0.057 0.943 9 C 0.256 3.744 10 H 0.040 0.960 11 O -0.574 6.574 12 C -0.060 4.060 13 C -0.126 4.126 14 C -0.067 4.067 15 C -0.212 4.212 16 C 0.520 3.480 17 F -0.181 7.181 18 F -0.178 7.178 19 F -0.178 7.178 20 C -0.067 4.067 21 C -0.132 4.132 22 H 0.264 0.736 23 H 0.359 0.641 24 H 0.138 0.862 25 H 0.154 0.846 26 H 0.153 0.847 27 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.238 -11.195 0.534 14.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.172 4.172 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.613 4.613 8 H 0.076 0.924 9 C 0.199 3.801 10 H 0.058 0.942 11 O -0.380 6.380 12 C -0.061 4.061 13 C -0.144 4.144 14 C -0.085 4.085 15 C -0.213 4.213 16 C 0.466 3.534 17 F -0.163 7.163 18 F -0.159 7.159 19 F -0.159 7.159 20 C -0.085 4.085 21 C -0.150 4.150 22 H 0.073 0.927 23 H 0.206 0.794 24 H 0.156 0.844 25 H 0.172 0.828 26 H 0.171 0.829 27 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.624 -11.180 0.082 14.120 hybrid contribution 0.702 0.902 0.239 1.167 sum 9.326 -10.279 0.321 13.883 Atomic orbital electron populations 1.70188 1.07556 1.27692 1.47814 1.25851 0.95461 1.02711 0.93161 0.85548 0.78734 0.78802 0.78462 1.19889 1.20776 1.18976 1.21781 0.93261 0.91512 1.54784 0.92436 1.18334 0.86952 0.89177 0.85664 0.94220 1.86564 1.38905 1.96354 1.16136 1.21415 0.95593 0.94717 0.94362 1.21037 0.97651 0.97155 0.98512 1.21056 0.95598 0.94294 0.97506 1.19974 1.03842 1.00629 0.96896 1.18112 0.79825 0.82087 0.73377 1.93208 1.39945 1.87439 1.95660 1.93172 1.95982 1.80017 1.46739 1.93171 1.93595 1.73026 1.56157 1.21039 0.94603 0.95230 0.97580 1.21119 0.99095 0.96450 0.98340 0.92683 0.79416 0.84390 0.82845 0.82924 0.84838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.41 12.85 21.45 0.28 -51.13 15 2 C 0.03 1.68 5.40 84.66 0.46 2.14 15 3 Si 0.96 41.83 29.54 68.60 2.03 43.85 15 4 H -0.27 -11.63 7.11 99.48 0.71 -10.93 15 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 15 6 H -0.27 -11.17 7.11 99.48 0.71 -10.47 15 7 C -0.58 -30.21 8.75 25.60 0.22 -29.98 15 8 H 0.06 2.97 7.74 -2.92 -0.02 2.95 15 9 C 0.26 12.52 3.06 29.10 0.09 12.61 15 10 H 0.04 2.16 8.05 -2.39 -0.02 2.14 15 11 O -0.57 -28.43 12.54 -148.98 -1.87 -30.29 15 12 C -0.06 -2.39 4.94 -19.87 -0.10 -2.49 15 13 C -0.13 -4.25 9.33 22.27 0.21 -4.04 15 14 C -0.07 -1.90 9.40 22.27 0.21 -1.69 15 15 C -0.21 -5.98 5.45 -19.87 -0.11 -6.08 15 16 C 0.52 13.08 3.36 71.24 0.24 13.32 15 17 F -0.18 -4.67 17.30 44.97 0.78 -3.89 15 18 F -0.18 -4.34 16.46 44.97 0.74 -3.60 15 19 F -0.18 -4.37 16.46 44.97 0.74 -3.63 15 20 C -0.07 -1.93 9.40 22.27 0.21 -1.72 15 21 C -0.13 -4.57 9.68 22.27 0.22 -4.35 15 22 H 0.26 14.34 8.31 -92.71 -0.77 13.57 15 23 H 0.36 15.27 7.39 -74.06 -0.55 14.72 15 24 H 0.14 4.31 6.62 -2.91 -0.02 4.29 15 25 H 0.15 3.50 7.61 -2.91 -0.02 3.47 15 26 H 0.15 3.55 7.60 -2.91 -0.02 3.52 15 27 H 0.13 4.42 8.06 -2.91 -0.02 4.40 15 Total: -1.00 -59.75 256.62 5.01 -54.73 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.67 Total: 16.26 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 1.65 Total: -22.29 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: 0.28 Total: -51.13 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -1.87 Total: -30.29 kcal Atomic # 9 Polarization: -13.39 SS G_CDS: 2.26 Total: -11.13 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -59.75 5.01 -54.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878367.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.163 kcal (2) G-P(sol) polarization free energy of solvation -59.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds