Wall clock time and date at job start Mon Mar 30 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00193 * 2 1 4 4 H 1.48497 * 109.46917 * 239.99788 * 3 2 1 5 5 H 1.48497 * 109.47185 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46988 * 119.99775 * 3 2 1 7 7 C 1.37876 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00151 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99996 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46822 * 299.99830 * 9 7 2 11 11 O 1.42894 * 109.46910 * 59.99972 * 9 7 2 12 12 C 1.50702 * 109.47043 * 179.97438 * 9 7 2 13 13 C 1.38258 * 120.00015 * 265.02183 * 12 9 7 14 14 C 1.38206 * 119.99593 * 179.97438 * 13 12 9 15 15 C 1.38261 * 120.00500 * 0.02562 * 14 13 12 16 16 C 1.38215 * 119.99392 * 359.70638 * 15 14 13 17 17 C 1.38211 * 119.99765 * 85.00066 * 12 9 7 18 18 C 1.50703 * 120.00060 * 0.02562 * 17 12 9 19 19 F 1.39905 * 109.47157 * 179.97438 * 18 17 12 20 20 F 1.39900 * 109.47159 * 60.00143 * 18 17 12 21 21 F 1.39897 * 109.47274 * 299.99834 * 18 17 12 22 22 H 0.97008 * 120.00333 * 0.02562 * 1 2 3 23 23 H 0.96700 * 114.00755 * 60.00235 * 11 9 7 24 24 H 1.07996 * 120.00074 * 359.97438 * 13 12 9 25 25 H 1.07997 * 120.00171 * 180.02562 * 14 13 12 26 26 H 1.07998 * 119.99978 * 179.97438 * 15 14 13 27 27 H 1.08001 * 119.99260 * 180.29422 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8903 11 8 0.4298 -2.5751 -1.1665 12 6 2.2302 -3.6447 0.0005 13 6 2.6004 -4.2376 -1.1923 14 6 3.4989 -5.2877 -1.1922 15 6 4.0271 -5.7457 0.0006 16 6 3.6612 -5.1492 1.1925 17 6 2.7585 -4.1021 1.1930 18 6 2.3548 -3.4558 2.4931 19 9 3.0156 -4.0869 3.5526 20 9 0.9722 -3.5803 2.6663 21 9 2.7015 -2.1007 2.4677 22 1 -0.4851 0.8401 -0.0004 23 1 0.9222 -2.5300 -1.9975 24 1 2.1875 -3.8802 -2.1240 25 1 3.7885 -5.7507 -2.1240 26 1 4.7289 -6.5666 0.0006 27 1 4.0774 -5.5039 2.1238 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085878401.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:35 Heat of formation + Delta-G solvation = -175.660462 kcal Electronic energy + Delta-G solvation = -18481.423572 eV Core-core repulsion = 14982.310814 eV Total energy + Delta-G solvation = -3499.112758 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.45438 -47.05791 -46.72506 -39.09398 -35.61889 -32.25733 -31.66652 -30.60935 -26.91629 -25.30587 -23.39474 -21.54037 -20.55733 -17.86816 -17.74874 -17.65808 -17.03928 -15.81580 -14.79202 -14.65835 -14.34658 -14.17357 -13.78906 -13.73134 -13.39157 -13.08894 -12.95856 -12.95311 -12.51745 -12.28269 -12.12605 -11.43266 -11.10455 -10.92677 -10.88606 -10.70659 -10.23000 -9.35898 -8.84139 -8.72429 -8.48761 -8.10490 -6.05650 -4.24105 1.41923 1.74981 3.29004 3.33486 3.36777 3.37309 3.96609 4.37705 4.41077 4.73990 5.15172 5.19216 5.22863 5.27544 5.40223 5.68758 5.86533 6.10904 6.20133 6.33498 6.60361 6.72169 6.78043 7.22360 7.54240 7.77457 7.99824 8.74371 9.19698 9.49450 10.98284 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.022963 B = 0.010677 C = 0.008930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.068770 B = 2621.799155 C = 3134.746996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.083 3.917 3 Si 0.893 3.107 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.557 4.557 8 H 0.059 0.941 9 C 0.241 3.759 10 H 0.083 0.917 11 O -0.555 6.555 12 C -0.020 4.020 13 C -0.125 4.125 14 C -0.091 4.091 15 C -0.151 4.151 16 C -0.078 4.078 17 C -0.186 4.186 18 C 0.507 3.493 19 F -0.194 7.194 20 F -0.177 7.177 21 F -0.152 7.152 22 H 0.263 0.737 23 H 0.346 0.654 24 H 0.130 0.870 25 H 0.122 0.878 26 H 0.123 0.877 27 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.545 -8.988 0.682 11.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.124 4.124 3 Si 0.719 3.281 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.595 4.595 8 H 0.077 0.923 9 C 0.184 3.816 10 H 0.100 0.900 11 O -0.358 6.358 12 C -0.021 4.021 13 C -0.143 4.143 14 C -0.110 4.110 15 C -0.169 4.169 16 C -0.096 4.096 17 C -0.188 4.188 18 C 0.453 3.547 19 F -0.175 7.175 20 F -0.159 7.159 21 F -0.133 7.133 22 H 0.073 0.927 23 H 0.191 0.809 24 H 0.148 0.852 25 H 0.140 0.860 26 H 0.141 0.859 27 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.870 -8.898 1.183 10.725 hybrid contribution 0.968 1.056 -0.119 1.437 sum 6.838 -7.842 1.064 10.459 Atomic orbital electron populations 1.70056 1.05933 1.26851 1.46404 1.24984 0.94716 0.99114 0.93584 0.86662 0.79721 0.82781 0.78886 1.20065 1.21098 1.19891 1.21315 0.93070 0.89826 1.55282 0.92275 1.18919 0.87174 0.87911 0.87616 0.89987 1.86653 1.37814 1.96125 1.15207 1.21353 0.94708 0.94828 0.91170 1.20945 0.98550 0.96714 0.98078 1.21261 0.95785 0.96008 0.97896 1.20912 1.02288 1.01487 0.92185 1.20890 0.95474 0.94216 0.99036 1.19813 1.05045 1.01439 0.92485 1.18287 0.74727 0.77730 0.83977 1.93085 1.81205 1.82620 1.60639 1.93159 1.31088 1.95784 1.95826 1.93350 1.91564 1.31954 1.96422 0.92702 0.80918 0.85209 0.85987 0.85899 0.85381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.02 12.84 55.43 0.71 -24.31 15 2 C 0.08 2.29 5.40 -17.82 -0.10 2.19 15 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 15 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 7 C -0.56 -15.01 6.84 -34.44 -0.24 -15.24 15 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 15 9 C 0.24 6.08 2.42 -29.03 -0.07 6.01 15 10 H 0.08 2.29 5.75 -51.93 -0.30 1.99 15 11 O -0.55 -13.93 12.38 -35.23 -0.44 -14.36 15 12 C -0.02 -0.42 4.97 -104.62 -0.52 -0.94 15 13 C -0.12 -2.21 9.30 -39.59 -0.37 -2.58 15 14 C -0.09 -1.33 10.05 -39.58 -0.40 -1.72 15 15 C -0.15 -2.11 10.05 -39.58 -0.40 -2.51 15 16 C -0.08 -1.25 9.43 -39.59 -0.37 -1.62 15 17 C -0.19 -3.66 5.37 -104.63 -0.56 -4.22 15 18 C 0.51 10.35 2.83 36.01 0.10 10.45 15 19 F -0.19 -3.46 15.97 2.25 0.04 -3.42 15 20 F -0.18 -3.82 15.33 2.25 0.03 -3.79 15 21 F -0.15 -3.49 14.90 2.25 0.03 -3.46 15 22 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 23 H 0.35 7.45 7.32 45.56 0.33 7.79 15 24 H 0.13 2.10 6.40 -52.49 -0.34 1.76 15 25 H 0.12 1.36 8.06 -52.49 -0.42 0.94 15 26 H 0.12 1.31 8.06 -52.49 -0.42 0.89 15 27 H 0.13 1.76 7.16 -52.49 -0.38 1.39 15 LS Contribution 247.75 15.07 3.73 3.73 Total: -1.00 -30.21 247.75 -4.89 -35.10 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -1.06 Total: 4.48 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -2.92 Total: -10.19 kcal Atomic # 7 Polarization: -25.02 SS G_CDS: 0.71 Total: -24.31 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.44 Total: -14.36 kcal Atomic # 9 Polarization: -10.77 SS G_CDS: 0.10 Total: -10.67 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.21 -4.89 -35.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878401.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.558 kcal (2) G-P(sol) polarization free energy of solvation -30.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds