Wall clock time and date at job start Mon Mar 30 2020 06:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 119.99900 * 2 1 4 4 H 1.48504 * 109.47217 * 240.00080 * 3 2 1 5 5 H 1.48502 * 109.47233 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47311 * 119.99769 * 3 2 1 7 7 C 1.37875 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00173 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00068 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47199 * 59.99830 * 9 7 2 11 11 O 1.42899 * 109.46935 * 299.99606 * 9 7 2 12 12 C 1.50704 * 109.47185 * 180.02562 * 9 7 2 13 13 C 1.38256 * 120.00069 * 94.97792 * 12 9 7 14 14 C 1.38213 * 119.99814 * 180.02562 * 13 12 9 15 15 C 1.38261 * 120.00176 * 359.97071 * 14 13 12 16 16 C 1.38219 * 119.99482 * 359.81796 * 15 14 13 17 17 C 1.38211 * 119.99697 * 274.99773 * 12 9 7 18 18 C 1.50703 * 120.00060 * 359.97438 * 17 12 9 19 19 F 1.39905 * 109.47157 * 179.97438 * 18 17 12 20 20 F 1.39900 * 109.47159 * 60.00143 * 18 17 12 21 21 F 1.39897 * 109.47274 * 299.99834 * 18 17 12 22 22 H 0.97001 * 120.00307 * 359.97438 * 1 2 3 23 23 H 0.96696 * 114.00574 * 300.00273 * 11 9 7 24 24 H 1.07995 * 120.00059 * 359.97438 * 13 12 9 25 25 H 1.07999 * 119.99937 * 179.97438 * 14 13 12 26 26 H 1.07998 * 119.99888 * 179.97438 * 15 14 13 27 27 H 1.08001 * 119.99221 * 180.22776 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6247 -2.5571 -0.8897 11 8 0.4291 -2.5746 1.1671 12 6 2.2304 -3.6446 0.0018 13 6 2.5997 -4.2370 1.1952 14 6 3.4983 -5.2871 1.1963 15 6 4.0274 -5.7456 0.0041 16 6 3.6547 -5.1561 -1.1893 17 6 2.7596 -4.1025 -1.1900 18 6 2.3569 -3.4569 -2.4908 19 9 3.0194 -4.0876 -3.5493 20 9 2.7035 -2.1017 -2.4657 21 9 0.9744 -3.5815 -2.6649 22 1 -0.4851 0.8400 0.0004 23 1 0.9209 -2.5290 1.9984 24 1 2.1867 -3.8786 2.1265 25 1 3.7871 -5.7496 2.1285 26 1 4.7298 -6.5659 0.0050 27 1 4.0652 -5.5167 -2.1209 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085878406.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:37 Heat of formation + Delta-G solvation = -195.785127 kcal Electronic energy + Delta-G solvation = -18482.159654 eV Core-core repulsion = 14982.174225 eV Total energy + Delta-G solvation = -3499.985429 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -51.07183 -48.63772 -48.42970 -40.47880 -37.43621 -34.32700 -33.06826 -32.03675 -28.78658 -26.83191 -25.14594 -22.95375 -22.10160 -19.42353 -19.36391 -19.29937 -18.98917 -17.30231 -16.72417 -16.23916 -15.83965 -15.61775 -15.45470 -15.33167 -15.02093 -14.81540 -14.66580 -14.57166 -14.17239 -13.79796 -13.53905 -13.30062 -12.91886 -12.80229 -12.44168 -12.11798 -12.06558 -11.24702 -10.77071 -10.42908 -10.05812 -9.61634 -8.14559 -6.38867 0.10895 0.44787 1.38355 1.41025 1.48389 1.81730 2.37387 2.68571 2.88354 3.10851 3.21962 3.57068 3.96486 4.01852 4.17287 4.24488 4.55557 4.57834 4.82974 5.00825 5.21081 5.36205 5.50657 5.63022 5.77331 5.94603 6.00951 6.66986 7.28849 7.44450 8.89291 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.022968 B = 0.010676 C = 0.008928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.792154 B = 2622.048031 C = 3135.328822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.030 3.970 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.556 4.556 8 H 0.054 0.946 9 C 0.244 3.756 10 H 0.042 0.958 11 O -0.571 6.571 12 C -0.056 4.056 13 C -0.136 4.136 14 C -0.078 4.078 15 C -0.131 4.131 16 C -0.079 4.079 17 C -0.207 4.207 18 C 0.502 3.498 19 F -0.178 7.178 20 F -0.174 7.174 21 F -0.191 7.191 22 H 0.263 0.737 23 H 0.359 0.641 24 H 0.136 0.864 25 H 0.167 0.833 26 H 0.171 0.829 27 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.982 -10.722 0.256 13.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.173 4.173 3 Si 0.778 3.222 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.594 4.594 8 H 0.072 0.928 9 C 0.186 3.814 10 H 0.060 0.940 11 O -0.376 6.376 12 C -0.057 4.057 13 C -0.153 4.153 14 C -0.095 4.095 15 C -0.149 4.149 16 C -0.097 4.097 17 C -0.208 4.208 18 C 0.448 3.552 19 F -0.160 7.160 20 F -0.155 7.155 21 F -0.172 7.172 22 H 0.071 0.929 23 H 0.206 0.794 24 H 0.154 0.846 25 H 0.184 0.816 26 H 0.189 0.811 27 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.326 -10.641 -0.240 13.513 hybrid contribution 0.261 1.444 -0.178 1.478 sum 8.586 -9.198 -0.418 12.589 Atomic orbital electron populations 1.70186 1.07500 1.27512 1.48353 1.25799 0.95434 1.02580 0.93443 0.85703 0.78545 0.78838 0.79133 1.19910 1.20734 1.18703 1.21558 0.92840 0.91092 1.53912 0.92759 1.18539 0.87229 0.89474 0.86138 0.94009 1.86572 1.38734 1.96303 1.16018 1.20969 0.95912 0.95358 0.93411 1.21149 0.99508 0.97741 0.96951 1.21741 0.93537 0.94091 1.00162 1.21504 1.01222 1.01356 0.90791 1.21256 0.94304 0.92848 1.01285 1.19886 1.06874 1.03000 0.91030 1.18557 0.74238 0.77057 0.85324 1.93099 1.80637 1.82109 1.60137 1.93289 1.91688 1.33923 1.96626 1.93126 1.32375 1.95764 1.95983 0.92851 0.79434 0.84594 0.81593 0.81124 0.83039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.24 12.84 21.45 0.28 -53.96 15 2 C 0.03 1.70 5.40 84.66 0.46 2.15 15 3 Si 0.95 44.20 29.54 68.60 2.03 46.23 15 4 H -0.27 -12.58 7.11 99.48 0.71 -11.88 15 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 15 6 H -0.26 -11.52 7.11 99.48 0.71 -10.82 15 7 C -0.56 -30.72 6.84 25.60 0.18 -30.54 15 8 H 0.05 2.98 7.74 -2.91 -0.02 2.95 15 9 C 0.24 12.71 2.42 29.10 0.07 12.78 15 10 H 0.04 2.49 5.75 -2.39 -0.01 2.48 15 11 O -0.57 -29.60 12.38 -148.98 -1.84 -31.44 15 12 C -0.06 -2.36 4.97 -19.87 -0.10 -2.45 15 13 C -0.14 -4.53 9.30 22.27 0.21 -4.32 15 14 C -0.08 -1.88 10.05 22.27 0.22 -1.66 15 15 C -0.13 -2.97 10.05 22.27 0.22 -2.75 15 16 C -0.08 -2.27 9.43 22.27 0.21 -2.06 15 17 C -0.21 -7.97 5.37 -19.87 -0.11 -8.08 15 18 C 0.50 20.87 2.83 71.24 0.20 21.08 15 19 F -0.18 -6.25 15.97 44.97 0.72 -5.54 15 20 F -0.17 -8.28 14.90 44.97 0.67 -7.61 15 21 F -0.19 -8.64 15.33 44.97 0.69 -7.95 15 22 H 0.26 15.03 8.31 -92.71 -0.77 14.26 15 23 H 0.36 15.82 7.32 -74.06 -0.54 15.28 15 24 H 0.14 4.21 6.40 -2.91 -0.02 4.19 15 25 H 0.17 2.60 8.06 -2.91 -0.02 2.58 15 26 H 0.17 2.33 8.06 -2.91 -0.02 2.30 15 27 H 0.15 3.57 7.16 -2.91 -0.02 3.55 15 Total: -1.00 -68.08 247.75 4.78 -63.30 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.69 Total: 12.82 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 1.56 Total: -15.85 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.28 Total: -53.96 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -1.84 Total: -31.44 kcal Atomic # 9 Polarization: -23.17 SS G_CDS: 2.08 Total: -21.09 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -68.08 4.78 -63.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878406.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.490 kcal (2) G-P(sol) polarization free energy of solvation -68.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds