Wall clock time and date at job start Mon Mar 30 2020 06:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 11 11 O 1.42907 * 109.46691 * 59.99721 * 9 7 2 12 12 C 1.50703 * 109.46925 * 179.97438 * 9 7 2 13 13 C 1.38249 * 120.00013 * 279.99555 * 12 9 7 14 14 C 1.38214 * 120.00174 * 180.02562 * 13 12 9 15 15 C 1.38260 * 119.99551 * 359.95557 * 14 13 12 16 16 C 1.38214 * 120.00222 * 0.02562 * 15 14 13 17 17 C 1.50696 * 119.99942 * 180.02562 * 16 15 14 18 18 F 1.39903 * 109.47267 * 0.02562 * 17 16 15 19 19 F 1.39901 * 109.46875 * 119.99959 * 17 16 15 20 20 F 1.39899 * 109.47278 * 240.00045 * 17 16 15 21 21 C 1.38210 * 119.99653 * 99.73226 * 12 9 7 22 22 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 23 23 H 0.96700 * 114.00202 * 60.00567 * 11 9 7 24 24 H 1.08008 * 120.00079 * 359.97438 * 13 12 9 25 25 H 1.07998 * 119.99957 * 179.97438 * 14 13 12 26 26 H 1.08005 * 119.99866 * 180.02562 * 15 14 13 27 27 H 1.07998 * 120.00400 * 359.97438 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8752 -0.6796 -0.8894 11 8 3.9874 -0.5210 1.1675 12 6 4.0139 -2.6149 -0.0001 13 6 4.0480 -3.3361 1.1789 14 6 4.5091 -4.6390 1.1789 15 6 4.9356 -5.2213 -0.0004 16 6 4.9012 -4.5004 -1.1791 17 6 5.3655 -5.1353 -2.4645 18 9 5.7811 -6.4473 -2.2130 19 9 4.3121 -5.1487 -3.3850 20 9 6.4337 -4.3997 -2.9888 21 6 4.4355 -3.1986 -1.1798 22 1 -0.4850 0.8400 -0.0004 23 1 3.7018 -0.9251 1.9983 24 1 3.7149 -2.8812 2.1001 25 1 4.5361 -5.2023 2.1000 26 1 5.2956 -6.2396 -0.0005 27 1 4.4045 -2.6368 -2.1016 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085878554.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:16 Heat of formation + Delta-G solvation = -180.587698 kcal Electronic energy + Delta-G solvation = -17595.609767 eV Core-core repulsion = 14096.283348 eV Total energy + Delta-G solvation = -3499.326419 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.01746 -47.55640 -47.45657 -39.25826 -36.10529 -32.42963 -31.63436 -31.16492 -27.24729 -25.80037 -23.26127 -22.09017 -20.52829 -18.33308 -18.22286 -18.03415 -17.37606 -16.06612 -15.13872 -15.11573 -14.73905 -14.38887 -14.24260 -13.93392 -13.78304 -13.64577 -13.55824 -13.06215 -12.89856 -12.66784 -12.41955 -11.98905 -11.48982 -11.16004 -10.95263 -10.80398 -10.02986 -9.45593 -8.98074 -8.88864 -8.78236 -8.26653 -6.25749 -4.40231 1.26741 1.61876 2.83066 3.36347 3.40445 3.51719 3.83794 3.90314 4.19801 4.37905 4.60923 5.01235 5.10248 5.11172 5.40544 5.58062 5.67466 5.78829 5.93645 6.20166 6.41952 6.55731 6.64616 7.08461 7.22756 7.34798 8.13015 8.63294 8.81446 9.34627 10.83886 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.032312 B = 0.006658 C = 0.006278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.331176 B = 4204.528535 C = 4458.948657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.085 3.915 3 Si 0.912 3.088 4 H -0.276 1.276 5 H -0.303 1.303 6 H -0.267 1.267 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.222 3.778 10 H 0.075 0.925 11 O -0.580 6.580 12 C -0.063 4.063 13 C -0.080 4.080 14 C -0.123 4.123 15 C -0.096 4.096 16 C -0.187 4.187 17 C 0.509 3.491 18 F -0.183 7.183 19 F -0.177 7.177 20 F -0.180 7.180 21 C -0.069 4.069 22 H 0.268 0.732 23 H 0.362 0.638 24 H 0.130 0.870 25 H 0.128 0.872 26 H 0.129 0.871 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.239 -9.177 -0.416 13.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.120 4.120 3 Si 0.741 3.259 4 H -0.202 1.202 5 H -0.230 1.230 6 H -0.192 1.192 7 C -0.597 4.597 8 H 0.095 0.905 9 C 0.165 3.835 10 H 0.092 0.908 11 O -0.387 6.387 12 C -0.063 4.063 13 C -0.098 4.098 14 C -0.141 4.141 15 C -0.114 4.114 16 C -0.188 4.188 17 C 0.455 3.545 18 F -0.164 7.164 19 F -0.159 7.159 20 F -0.161 7.161 21 C -0.087 4.087 22 H 0.078 0.922 23 H 0.210 0.790 24 H 0.147 0.853 25 H 0.146 0.854 26 H 0.147 0.853 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.364 -8.711 -0.909 13.569 hybrid contribution 0.016 0.245 0.085 0.260 sum 10.380 -8.466 -0.824 13.420 Atomic orbital electron populations 1.69938 1.06634 1.27759 1.47788 1.25017 0.94725 0.99920 0.92374 0.86267 0.79240 0.81613 0.78735 1.20212 1.23044 1.19190 1.21374 0.88538 0.95190 1.54594 0.90481 1.19076 0.94308 0.83784 0.86358 0.90756 1.86459 1.77585 1.57982 1.16626 1.20983 0.93841 0.99363 0.92126 1.21174 0.96283 0.93721 0.98667 1.21054 0.99978 0.95486 0.97543 1.20798 0.99464 0.99587 0.91538 1.19854 1.09552 0.97170 0.92226 1.18386 0.75068 0.75884 0.85132 1.93129 1.90673 1.38373 1.94215 1.93218 1.57302 1.96281 1.69050 1.93197 1.57586 1.77091 1.88258 1.20737 0.95938 0.92768 0.99279 0.92224 0.79047 0.85257 0.85432 0.85283 0.85216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.99 13.96 55.43 0.77 -25.22 15 2 C 0.09 2.36 5.47 -17.82 -0.10 2.26 15 3 Si 0.91 22.19 26.18 -169.99 -4.45 17.74 15 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 15 5 H -0.30 -7.34 7.11 56.52 0.40 -6.94 15 6 H -0.27 -6.41 6.54 56.52 0.37 -6.04 15 7 C -0.56 -14.85 9.32 -34.44 -0.32 -15.17 15 8 H 0.08 2.24 7.98 -52.49 -0.42 1.82 15 9 C 0.22 4.97 2.54 -29.03 -0.07 4.89 15 10 H 0.07 1.72 7.06 -51.93 -0.37 1.35 15 11 O -0.58 -12.40 10.89 -35.23 -0.38 -12.78 15 12 C -0.06 -1.20 4.91 -104.63 -0.51 -1.72 15 13 C -0.08 -1.33 9.32 -39.59 -0.37 -1.70 15 14 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 15 15 C -0.10 -1.36 9.43 -39.58 -0.37 -1.73 15 16 C -0.19 -2.97 5.37 -104.63 -0.56 -3.53 15 17 C 0.51 7.54 3.32 36.00 0.12 7.66 15 18 F -0.18 -2.50 15.97 2.25 0.04 -2.47 15 19 F -0.18 -2.77 17.23 2.25 0.04 -2.73 15 20 F -0.18 -2.68 17.24 2.25 0.04 -2.64 15 21 C -0.07 -1.23 9.22 -39.58 -0.37 -1.60 15 22 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 23 H 0.36 6.60 7.49 45.56 0.34 6.94 15 24 H 0.13 1.93 6.79 -52.48 -0.36 1.58 15 25 H 0.13 1.38 8.06 -52.49 -0.42 0.95 15 26 H 0.13 1.52 7.16 -52.48 -0.38 1.14 15 27 H 0.13 2.23 8.04 -52.49 -0.42 1.81 15 LS Contribution 252.06 15.07 3.80 3.80 Total: -1.00 -29.37 252.06 -4.29 -33.66 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -1.19 Total: 3.37 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -2.95 Total: -12.74 kcal Atomic # 7 Polarization: -25.99 SS G_CDS: 0.77 Total: -25.22 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.38 Total: -12.78 kcal Atomic # 9 Polarization: -7.95 SS G_CDS: 0.11 Total: -7.84 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.45 Total: 17.74 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.37 -4.29 -33.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878554.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.925 kcal (2) G-P(sol) polarization free energy of solvation -29.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds