Wall clock time and date at job start Mon Mar 30 2020 06:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 11 11 O 1.42907 * 109.46691 * 59.99721 * 9 7 2 12 12 C 1.50703 * 109.46925 * 179.97438 * 9 7 2 13 13 C 1.38249 * 120.00013 * 279.99555 * 12 9 7 14 14 C 1.38214 * 120.00174 * 180.02562 * 13 12 9 15 15 C 1.38260 * 119.99551 * 359.95557 * 14 13 12 16 16 C 1.38214 * 120.00222 * 0.02562 * 15 14 13 17 17 C 1.50696 * 119.99942 * 180.02562 * 16 15 14 18 18 F 1.39903 * 109.47267 * 0.02562 * 17 16 15 19 19 F 1.39901 * 109.46875 * 119.99959 * 17 16 15 20 20 F 1.39899 * 109.47278 * 240.00045 * 17 16 15 21 21 C 1.38210 * 119.99653 * 99.73226 * 12 9 7 22 22 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 23 23 H 0.96700 * 114.00202 * 60.00567 * 11 9 7 24 24 H 1.08008 * 120.00079 * 359.97438 * 13 12 9 25 25 H 1.07998 * 119.99957 * 179.97438 * 14 13 12 26 26 H 1.08005 * 119.99866 * 180.02562 * 15 14 13 27 27 H 1.07998 * 120.00400 * 359.97438 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8752 -0.6796 -0.8894 11 8 3.9874 -0.5210 1.1675 12 6 4.0139 -2.6149 -0.0001 13 6 4.0480 -3.3361 1.1789 14 6 4.5091 -4.6390 1.1789 15 6 4.9356 -5.2213 -0.0004 16 6 4.9012 -4.5004 -1.1791 17 6 5.3655 -5.1353 -2.4645 18 9 5.7811 -6.4473 -2.2130 19 9 4.3121 -5.1487 -3.3850 20 9 6.4337 -4.3997 -2.9888 21 6 4.4355 -3.1986 -1.1798 22 1 -0.4850 0.8400 -0.0004 23 1 3.7018 -0.9251 1.9983 24 1 3.7149 -2.8812 2.1001 25 1 4.5361 -5.2023 2.1000 26 1 5.2956 -6.2396 -0.0005 27 1 4.4045 -2.6368 -2.1016 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085878554.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:16 Heat of formation + Delta-G solvation = -199.752716 kcal Electronic energy + Delta-G solvation = -17596.440825 eV Core-core repulsion = 14096.283348 eV Total energy + Delta-G solvation = -3500.157477 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.19218 -48.70342 -48.65855 -40.58311 -37.75866 -34.50865 -32.93137 -32.52474 -29.08184 -27.00860 -24.96223 -23.34720 -21.96886 -19.65652 -19.51234 -19.36109 -19.07590 -17.38082 -16.89901 -16.59281 -16.36450 -15.57391 -15.46036 -15.10238 -15.06104 -14.92219 -14.82390 -14.72073 -14.54376 -14.11299 -13.83157 -13.54885 -13.03890 -12.97186 -12.59133 -12.18702 -11.82439 -11.39037 -10.90333 -10.68003 -10.11638 -9.70294 -8.39243 -6.55876 0.01569 0.35572 1.41742 1.43297 1.57738 1.63939 2.35194 2.56658 2.70457 2.94614 3.03098 3.41531 3.85668 3.89928 3.99918 4.16224 4.36400 4.47262 4.66172 4.94432 5.05344 5.20546 5.33512 5.40010 5.68839 5.86641 6.05002 6.57151 7.05858 7.24546 8.74449 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.032312 B = 0.006658 C = 0.006278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.331176 B = 4204.528535 C = 4458.948657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.035 3.965 3 Si 0.971 3.029 4 H -0.270 1.270 5 H -0.302 1.302 6 H -0.262 1.262 7 C -0.555 4.555 8 H 0.041 0.959 9 C 0.231 3.769 10 H 0.063 0.937 11 O -0.581 6.581 12 C -0.094 4.094 13 C -0.088 4.088 14 C -0.111 4.111 15 C -0.086 4.086 16 C -0.194 4.194 17 C 0.515 3.485 18 F -0.172 7.172 19 F -0.184 7.184 20 F -0.181 7.181 21 C -0.086 4.086 22 H 0.270 0.730 23 H 0.376 0.624 24 H 0.141 0.859 25 H 0.169 0.831 26 H 0.161 0.839 27 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.939 -10.274 0.486 15.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.166 4.166 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.230 1.230 6 H -0.187 1.187 7 C -0.593 4.593 8 H 0.059 0.941 9 C 0.173 3.827 10 H 0.081 0.919 11 O -0.390 6.390 12 C -0.094 4.094 13 C -0.106 4.106 14 C -0.129 4.129 15 C -0.103 4.103 16 C -0.195 4.195 17 C 0.461 3.539 18 F -0.153 7.153 19 F -0.166 7.166 20 F -0.162 7.162 21 C -0.104 4.104 22 H 0.079 0.921 23 H 0.226 0.774 24 H 0.159 0.841 25 H 0.187 0.813 26 H 0.179 0.821 27 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.078 -9.822 0.001 15.567 hybrid contribution -0.490 0.441 -0.169 0.680 sum 11.588 -9.381 -0.167 14.910 Atomic orbital electron populations 1.70051 1.08224 1.28636 1.50142 1.25785 0.95266 1.03181 0.92339 0.85338 0.78045 0.77878 0.78938 1.19510 1.22990 1.18687 1.21604 0.90997 0.93499 1.53185 0.94111 1.18723 0.91479 0.86203 0.86293 0.91913 1.86377 1.77253 1.58258 1.17078 1.20724 0.96604 0.98152 0.93952 1.21416 0.96217 0.94879 0.98070 1.21478 0.97860 0.94400 0.99131 1.21259 0.97656 1.00684 0.90748 1.19979 1.09484 0.96572 0.93463 1.18217 0.74858 0.76183 0.84603 1.93148 1.90524 1.37547 1.94111 1.93208 1.57724 1.96340 1.69283 1.93197 1.57555 1.77219 1.88239 1.20741 0.96955 0.93950 0.98762 0.92067 0.77411 0.84136 0.81330 0.82130 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.04 13.96 21.45 0.30 -55.74 15 2 C 0.04 1.97 5.47 84.65 0.46 2.44 15 3 Si 0.97 45.91 26.18 68.60 1.80 47.71 15 4 H -0.27 -12.38 7.11 99.48 0.71 -11.68 15 5 H -0.30 -14.14 7.11 99.48 0.71 -13.43 15 6 H -0.26 -12.09 6.54 99.48 0.65 -11.44 15 7 C -0.56 -30.05 9.32 25.60 0.24 -29.82 15 8 H 0.04 2.45 7.98 -2.92 -0.02 2.43 15 9 C 0.23 10.33 2.54 29.11 0.07 10.40 15 10 H 0.06 2.93 7.06 -2.39 -0.02 2.91 15 11 O -0.58 -24.16 10.89 -148.98 -1.62 -25.79 15 12 C -0.09 -3.56 4.91 -19.87 -0.10 -3.66 15 13 C -0.09 -2.72 9.32 22.27 0.21 -2.52 15 14 C -0.11 -2.69 10.05 22.27 0.22 -2.47 15 15 C -0.09 -2.12 9.43 22.27 0.21 -1.91 15 16 C -0.19 -5.78 5.37 -19.87 -0.11 -5.89 15 17 C 0.52 14.34 3.32 71.23 0.24 14.57 15 18 F -0.17 -4.22 15.97 44.97 0.72 -3.50 15 19 F -0.18 -5.58 17.23 44.97 0.77 -4.80 15 20 F -0.18 -5.12 17.24 44.97 0.78 -4.34 15 21 C -0.09 -3.03 9.22 22.27 0.21 -2.83 15 22 H 0.27 15.22 8.31 -92.71 -0.77 14.45 15 23 H 0.38 13.18 7.49 -74.06 -0.56 12.62 15 24 H 0.14 3.91 6.79 -2.91 -0.02 3.89 15 25 H 0.17 2.71 8.06 -2.91 -0.02 2.69 15 26 H 0.16 2.98 7.16 -2.91 -0.02 2.96 15 27 H 0.12 4.35 8.04 -2.91 -0.02 4.32 15 Total: -1.00 -63.43 252.06 5.01 -58.42 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.61 Total: 9.71 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 1.65 Total: -21.68 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.30 Total: -55.74 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -1.62 Total: -25.79 kcal Atomic # 9 Polarization: -14.91 SS G_CDS: 2.27 Total: -12.64 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.80 Total: 47.71 kcal Total: -63.43 5.01 -58.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878554.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.328 kcal (2) G-P(sol) polarization free energy of solvation -63.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds