Wall clock time and date at job start Mon Mar 30 2020 06:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00190 * 2 1 4 4 H 1.48497 * 109.47167 * 269.99677 * 3 2 1 5 5 H 1.48500 * 109.47028 * 29.99825 * 3 2 1 6 6 H 1.48497 * 109.47377 * 149.99860 * 3 2 1 7 7 C 1.37877 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99852 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00129 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 60.00169 * 9 7 2 11 11 O 1.42898 * 109.46964 * 300.00198 * 9 7 2 12 12 C 1.50703 * 109.47227 * 180.02562 * 9 7 2 13 13 C 1.38258 * 119.99785 * 84.72730 * 12 9 7 14 14 C 1.38220 * 119.99829 * 179.76856 * 13 12 9 15 15 C 1.38256 * 119.99642 * 0.50685 * 14 13 12 16 16 C 1.38217 * 120.00330 * 359.74394 * 15 14 13 17 17 C 1.50697 * 119.99930 * 179.97438 * 16 15 14 18 18 F 1.39899 * 109.46763 * 270.02153 * 17 16 15 19 19 F 1.39898 * 109.47374 * 30.02398 * 17 16 15 20 20 F 1.39901 * 109.46997 * 150.02737 * 17 16 15 21 21 C 1.38206 * 119.99906 * 265.00235 * 12 9 7 22 22 H 0.96999 * 119.99716 * 359.97438 * 1 2 3 23 23 H 0.96698 * 113.99898 * 299.99550 * 11 9 7 24 24 H 1.07996 * 120.00218 * 359.97438 * 13 12 9 25 25 H 1.07991 * 120.00147 * 180.23034 * 14 13 12 26 26 H 1.08005 * 119.99628 * 179.72894 * 15 14 13 27 27 H 1.07999 * 120.00496 * 359.97438 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8745 -0.6801 0.8912 11 8 3.9883 -0.5207 -1.1656 12 6 4.0138 -2.6149 0.0010 13 6 4.1410 -3.3031 -1.1914 14 6 4.6062 -4.6046 -1.1920 15 6 4.9345 -5.2218 0.0008 16 6 4.8025 -4.5356 1.1933 17 6 5.1598 -5.2087 2.4934 18 9 4.0312 -5.8544 3.0098 19 9 6.1727 -6.1474 2.2697 20 9 5.6070 -4.2489 3.4078 21 6 4.3420 -3.2319 1.1933 22 1 -0.4850 0.8401 0.0004 23 1 3.7033 -0.9244 -1.9968 24 1 3.8799 -2.8226 -2.1227 25 1 4.7091 -5.1409 -2.1237 26 1 5.2939 -6.2403 0.0007 27 1 4.2389 -2.6958 2.1252 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085878558.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:18 Heat of formation + Delta-G solvation = -180.650958 kcal Electronic energy + Delta-G solvation = -17601.844037 eV Core-core repulsion = 14102.514874 eV Total energy + Delta-G solvation = -3499.329162 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.00962 -47.53934 -47.45911 -39.25979 -36.11382 -32.43541 -31.62129 -31.16835 -27.25459 -25.78982 -23.27734 -22.05073 -20.55130 -18.34188 -18.20299 -18.03482 -17.35879 -16.08165 -15.16767 -15.06250 -14.75368 -14.35117 -14.27856 -13.95552 -13.77106 -13.64159 -13.55152 -13.05919 -12.91973 -12.66158 -12.38157 -12.00348 -11.47371 -11.15544 -10.95970 -10.80542 -10.03535 -9.45764 -8.99771 -8.89118 -8.78318 -8.24880 -6.25754 -4.40335 1.26861 1.62188 2.83763 3.36333 3.40423 3.51697 3.84054 3.90787 4.20673 4.37865 4.61262 5.00632 5.09437 5.11488 5.40281 5.57515 5.67357 5.78983 5.93939 6.20370 6.42387 6.56361 6.64198 7.08399 7.22586 7.34494 8.12911 8.63074 8.81285 9.34545 10.83888 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.031972 B = 0.006713 C = 0.006290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.548432 B = 4169.967128 C = 4450.178230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.085 3.915 3 Si 0.912 3.088 4 H -0.276 1.276 5 H -0.303 1.303 6 H -0.267 1.267 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.222 3.778 10 H 0.076 0.924 11 O -0.580 6.580 12 C -0.062 4.062 13 C -0.083 4.083 14 C -0.122 4.122 15 C -0.094 4.094 16 C -0.186 4.186 17 C 0.509 3.491 18 F -0.179 7.179 19 F -0.183 7.183 20 F -0.179 7.179 21 C -0.070 4.070 22 H 0.268 0.732 23 H 0.362 0.638 24 H 0.129 0.871 25 H 0.128 0.872 26 H 0.127 0.873 27 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.168 -9.162 0.469 13.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.120 4.120 3 Si 0.741 3.259 4 H -0.202 1.202 5 H -0.230 1.230 6 H -0.192 1.192 7 C -0.597 4.597 8 H 0.095 0.905 9 C 0.165 3.835 10 H 0.093 0.907 11 O -0.387 6.387 12 C -0.063 4.063 13 C -0.101 4.101 14 C -0.140 4.140 15 C -0.112 4.112 16 C -0.188 4.188 17 C 0.455 3.545 18 F -0.160 7.160 19 F -0.164 7.164 20 F -0.160 7.160 21 C -0.088 4.088 22 H 0.078 0.922 23 H 0.210 0.790 24 H 0.147 0.853 25 H 0.146 0.854 26 H 0.144 0.856 27 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 10.289 -8.698 0.961 13.507 hybrid contribution -0.005 0.227 -0.098 0.248 sum 10.284 -8.471 0.863 13.351 Atomic orbital electron populations 1.69938 1.06637 1.27762 1.47778 1.25018 0.94725 0.99916 0.92369 0.86264 0.79244 0.81608 0.78735 1.20215 1.23044 1.19179 1.21364 0.88516 0.95194 1.54640 0.90489 1.19075 0.94285 0.83804 0.86369 0.90673 1.86456 1.77555 1.58020 1.16649 1.20996 0.93860 0.99359 0.92076 1.21163 0.96335 0.93947 0.98612 1.21036 1.00255 0.95304 0.97418 1.20723 0.99558 0.99558 0.91394 1.19861 1.10172 0.96983 0.91753 1.18384 0.74325 0.76462 0.85287 1.93216 1.51815 1.82475 1.88485 1.93152 1.61485 1.67001 1.94767 1.93179 1.89500 1.63756 1.69563 1.20785 0.95945 0.92562 0.99482 0.92218 0.79034 0.85300 0.85442 0.85555 0.84942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.96 55.43 0.77 -25.23 15 2 C 0.09 2.36 5.47 -17.82 -0.10 2.27 15 3 Si 0.91 22.19 26.18 -169.99 -4.45 17.74 15 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 5 H -0.30 -7.34 7.11 56.52 0.40 -6.94 15 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 15 7 C -0.56 -14.87 9.33 -34.44 -0.32 -15.19 15 8 H 0.08 2.24 7.98 -52.49 -0.42 1.82 15 9 C 0.22 4.96 2.55 -29.03 -0.07 4.89 15 10 H 0.08 1.74 7.11 -51.93 -0.37 1.37 15 11 O -0.58 -12.38 10.83 -35.23 -0.38 -12.76 15 12 C -0.06 -1.20 4.94 -104.62 -0.52 -1.72 15 13 C -0.08 -1.36 9.33 -39.58 -0.37 -1.73 15 14 C -0.12 -1.71 10.05 -39.58 -0.40 -2.11 15 15 C -0.09 -1.34 9.40 -39.58 -0.37 -1.71 15 16 C -0.19 -2.97 5.45 -104.62 -0.57 -3.54 15 17 C 0.51 7.58 3.36 36.00 0.12 7.70 15 18 F -0.18 -2.76 17.30 2.25 0.04 -2.72 15 19 F -0.18 -2.52 16.46 2.25 0.04 -2.49 15 20 F -0.18 -2.71 16.46 2.25 0.04 -2.68 15 21 C -0.07 -1.25 9.03 -39.58 -0.36 -1.61 15 22 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 23 H 0.36 6.59 7.39 45.56 0.34 6.92 15 24 H 0.13 1.90 6.62 -52.49 -0.35 1.55 15 25 H 0.13 1.37 8.06 -52.49 -0.42 0.95 15 26 H 0.13 1.48 7.60 -52.48 -0.40 1.08 15 27 H 0.13 2.31 7.60 -52.49 -0.40 1.91 15 LS Contribution 251.53 15.07 3.79 3.79 Total: -1.00 -29.39 251.53 -4.30 -33.68 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -1.19 Total: 3.40 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -2.96 Total: -12.73 kcal Atomic # 7 Polarization: -26.01 SS G_CDS: 0.77 Total: -25.23 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.38 Total: -12.76 kcal Atomic # 9 Polarization: -7.99 SS G_CDS: 0.11 Total: -7.88 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.45 Total: 17.74 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.39 -4.30 -33.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878558.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.968 kcal (2) G-P(sol) polarization free energy of solvation -29.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds