Wall clock time and date at job start Mon Mar 30 2020 06:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00190 * 2 1 4 4 H 1.48497 * 109.47167 * 269.99677 * 3 2 1 5 5 H 1.48500 * 109.47028 * 29.99825 * 3 2 1 6 6 H 1.48497 * 109.47377 * 149.99860 * 3 2 1 7 7 C 1.37877 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99852 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00129 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 60.00169 * 9 7 2 11 11 O 1.42898 * 109.46964 * 300.00198 * 9 7 2 12 12 C 1.50703 * 109.47227 * 180.02562 * 9 7 2 13 13 C 1.38258 * 119.99785 * 84.72730 * 12 9 7 14 14 C 1.38220 * 119.99829 * 179.76856 * 13 12 9 15 15 C 1.38256 * 119.99642 * 0.50685 * 14 13 12 16 16 C 1.38217 * 120.00330 * 359.74394 * 15 14 13 17 17 C 1.50697 * 119.99930 * 179.97438 * 16 15 14 18 18 F 1.39899 * 109.46763 * 270.02153 * 17 16 15 19 19 F 1.39898 * 109.47374 * 30.02398 * 17 16 15 20 20 F 1.39901 * 109.46997 * 150.02737 * 17 16 15 21 21 C 1.38206 * 119.99906 * 265.00235 * 12 9 7 22 22 H 0.96999 * 119.99716 * 359.97438 * 1 2 3 23 23 H 0.96698 * 113.99898 * 299.99550 * 11 9 7 24 24 H 1.07996 * 120.00218 * 359.97438 * 13 12 9 25 25 H 1.07991 * 120.00147 * 180.23034 * 14 13 12 26 26 H 1.08005 * 119.99628 * 179.72894 * 15 14 13 27 27 H 1.07999 * 120.00496 * 359.97438 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8745 -0.6801 0.8912 11 8 3.9883 -0.5207 -1.1656 12 6 4.0138 -2.6149 0.0010 13 6 4.1410 -3.3031 -1.1914 14 6 4.6062 -4.6046 -1.1920 15 6 4.9345 -5.2218 0.0008 16 6 4.8025 -4.5356 1.1933 17 6 5.1598 -5.2087 2.4934 18 9 4.0312 -5.8544 3.0098 19 9 6.1727 -6.1474 2.2697 20 9 5.6070 -4.2489 3.4078 21 6 4.3420 -3.2319 1.1933 22 1 -0.4850 0.8401 0.0004 23 1 3.7033 -0.9244 -1.9968 24 1 3.8799 -2.8226 -2.1227 25 1 4.7091 -5.1409 -2.1237 26 1 5.2939 -6.2403 0.0007 27 1 4.2389 -2.6958 2.1252 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085878558.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:18 Heat of formation + Delta-G solvation = -199.845996 kcal Electronic energy + Delta-G solvation = -17602.676396 eV Core-core repulsion = 14102.514874 eV Total energy + Delta-G solvation = -3500.161522 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -51.19097 -48.70136 -48.65825 -40.58379 -37.76388 -34.51435 -32.91778 -32.52841 -29.08726 -27.00149 -24.97630 -23.30822 -21.99349 -19.66701 -19.51008 -19.38136 -19.04318 -17.39922 -16.90713 -16.52381 -16.39477 -15.55023 -15.50256 -15.12820 -15.05175 -14.91983 -14.82242 -14.71150 -14.56747 -14.10697 -13.80882 -13.53932 -13.03681 -12.97064 -12.58523 -12.19034 -11.82545 -11.39626 -10.90457 -10.69293 -10.11713 -9.68742 -8.39382 -6.56177 0.01781 0.36010 1.41838 1.43369 1.57870 1.64142 2.35173 2.57134 2.70612 2.94117 3.03019 3.41733 3.85653 3.91081 3.98691 4.16032 4.36338 4.48024 4.66664 4.94898 5.05715 5.20623 5.33288 5.39790 5.68787 5.86827 6.04692 6.56899 7.05713 7.24311 8.74362 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.031972 B = 0.006713 C = 0.006290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.548432 B = 4169.967128 C = 4450.178230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.035 3.965 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.302 1.302 6 H -0.262 1.262 7 C -0.556 4.556 8 H 0.040 0.960 9 C 0.231 3.769 10 H 0.064 0.936 11 O -0.581 6.581 12 C -0.094 4.094 13 C -0.089 4.089 14 C -0.111 4.111 15 C -0.084 4.084 16 C -0.194 4.194 17 C 0.515 3.485 18 F -0.183 7.183 19 F -0.172 7.172 20 F -0.182 7.182 21 C -0.087 4.087 22 H 0.270 0.730 23 H 0.377 0.623 24 H 0.142 0.858 25 H 0.170 0.830 26 H 0.159 0.841 27 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.942 -10.217 -0.499 15.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.166 4.166 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.230 1.230 6 H -0.187 1.187 7 C -0.593 4.593 8 H 0.058 0.942 9 C 0.173 3.827 10 H 0.082 0.918 11 O -0.389 6.389 12 C -0.094 4.094 13 C -0.107 4.107 14 C -0.128 4.128 15 C -0.102 4.102 16 C -0.195 4.195 17 C 0.461 3.539 18 F -0.164 7.164 19 F -0.154 7.154 20 F -0.164 7.164 21 C -0.105 4.105 22 H 0.079 0.921 23 H 0.226 0.774 24 H 0.160 0.840 25 H 0.187 0.813 26 H 0.177 0.823 27 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.077 -9.767 -0.014 15.532 hybrid contribution -0.533 0.410 0.176 0.696 sum 11.544 -9.357 0.162 14.860 Atomic orbital electron populations 1.70053 1.08246 1.28649 1.50129 1.25793 0.95271 1.03208 0.92316 0.85327 0.78044 0.77820 0.78952 1.19487 1.22992 1.18652 1.21596 0.91012 0.93477 1.53244 0.94200 1.18715 0.91427 0.86227 0.86318 0.91842 1.86374 1.77208 1.58279 1.17088 1.20739 0.96693 0.98138 0.93875 1.21422 0.96131 0.95132 0.98026 1.21469 0.98096 0.94162 0.99084 1.21198 0.97664 1.00732 0.90634 1.19984 1.10138 0.96353 0.93029 1.18225 0.74375 0.76448 0.84832 1.93210 1.52151 1.82515 1.88514 1.93171 1.60976 1.66547 1.94677 1.93173 1.89517 1.64006 1.69681 1.20775 0.97072 0.93761 0.98917 0.92060 0.77395 0.83992 0.81282 0.82318 0.85765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.13 13.96 21.45 0.30 -55.83 15 2 C 0.04 1.97 5.47 84.65 0.46 2.43 15 3 Si 0.97 45.90 26.18 68.60 1.80 47.69 15 4 H -0.27 -12.35 7.11 99.48 0.71 -11.65 15 5 H -0.30 -14.13 7.11 99.48 0.71 -13.42 15 6 H -0.26 -12.06 6.54 99.48 0.65 -11.41 15 7 C -0.56 -30.14 9.33 25.60 0.24 -29.90 15 8 H 0.04 2.41 7.98 -2.91 -0.02 2.38 15 9 C 0.23 10.33 2.55 29.10 0.07 10.41 15 10 H 0.06 2.96 7.11 -2.39 -0.02 2.94 15 11 O -0.58 -24.06 10.83 -148.98 -1.61 -25.68 15 12 C -0.09 -3.56 4.94 -19.87 -0.10 -3.66 15 13 C -0.09 -2.74 9.33 22.27 0.21 -2.53 15 14 C -0.11 -2.66 10.05 22.27 0.22 -2.44 15 15 C -0.08 -2.09 9.40 22.27 0.21 -1.88 15 16 C -0.19 -5.82 5.45 -19.86 -0.11 -5.93 15 17 C 0.52 14.45 3.36 71.23 0.24 14.69 15 18 F -0.18 -5.38 17.30 44.97 0.78 -4.61 15 19 F -0.17 -4.29 16.46 44.97 0.74 -3.55 15 20 F -0.18 -5.38 16.46 44.97 0.74 -4.64 15 21 C -0.09 -3.10 9.03 22.27 0.20 -2.90 15 22 H 0.27 15.24 8.31 -92.71 -0.77 14.47 15 23 H 0.38 13.11 7.39 -74.06 -0.55 12.57 15 24 H 0.14 3.86 6.62 -2.91 -0.02 3.84 15 25 H 0.17 2.68 8.06 -2.92 -0.02 2.65 15 26 H 0.16 2.92 7.60 -2.91 -0.02 2.89 15 27 H 0.12 4.46 7.60 -2.91 -0.02 4.43 15 Total: -1.00 -63.62 251.53 5.01 -58.61 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 0.62 Total: 9.71 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: 1.65 Total: -21.71 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.30 Total: -55.83 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -1.61 Total: -25.68 kcal Atomic # 9 Polarization: -15.05 SS G_CDS: 2.26 Total: -12.79 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.80 Total: 47.69 kcal Total: -63.62 5.01 -58.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878558.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.235 kcal (2) G-P(sol) polarization free energy of solvation -63.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds