Wall clock time and date at job start Mon Mar 30 2020 06:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86790 * 120.00360 * 2 1 4 4 H 1.48498 * 109.47337 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47146 * 300.00218 * 3 2 1 6 6 H 1.48499 * 109.47460 * 60.00303 * 3 2 1 7 7 C 1.37876 * 119.99554 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00356 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47122 * 60.00596 * 9 7 2 11 11 N 1.46906 * 109.47167 * 300.00384 * 9 7 2 12 12 C 1.50697 * 109.47576 * 180.02562 * 9 7 2 13 13 C 1.38228 * 119.61625 * 124.99958 * 12 9 7 14 14 C 1.38634 * 119.15680 * 179.97438 * 13 12 9 15 15 C 1.50706 * 120.78677 * 179.97438 * 14 13 12 16 16 F 1.39891 * 109.47059 * 90.00036 * 15 14 13 17 17 F 1.39896 * 109.46879 * 210.00062 * 15 14 13 18 18 F 1.39901 * 109.47249 * 329.99652 * 15 14 13 19 19 C 1.38669 * 118.42354 * 359.97438 * 14 13 12 20 20 C 1.38186 * 119.16080 * 0.02562 * 19 14 13 21 21 N 1.31851 * 119.61946 * 304.72917 * 12 9 7 22 22 H 0.97005 * 119.99198 * 359.97438 * 1 2 3 23 23 H 1.00896 * 111.00309 * 299.99562 * 11 9 7 24 24 H 1.00902 * 110.99923 * 63.95725 * 11 9 7 25 25 H 1.07993 * 120.42270 * 0.02562 * 13 12 9 26 26 H 1.07997 * 120.42250 * 179.97438 * 19 14 13 27 27 H 1.07998 * 119.61300 * 179.97438 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4068 -2.5772 1.1992 12 6 2.2301 -3.6447 -0.0005 13 6 2.1500 -4.6118 0.9838 14 6 3.0553 -5.6617 0.9744 15 6 3.0018 -6.7358 2.0302 16 9 2.1633 -7.7701 1.6011 17 9 4.2887 -7.2391 2.2489 18 9 2.5040 -6.1953 3.2206 19 6 4.0111 -5.7001 -0.0295 20 6 4.0298 -4.6974 -0.9801 21 7 3.1499 -3.7157 -0.9426 22 1 -0.4849 0.8402 0.0004 23 1 0.9650 -2.5260 2.0381 24 1 -0.3006 -1.8577 1.1910 25 1 1.3914 -4.5507 1.7500 26 1 4.7324 -6.5030 -0.0674 27 1 4.7713 -4.7198 -1.7650 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095705652.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:55 Heat of formation + Delta-G solvation = -136.416089 kcal Electronic energy + Delta-G solvation = -17616.579985 eV Core-core repulsion = 14151.461741 eV Total energy + Delta-G solvation = -3465.118243 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -51.23007 -48.73121 -48.69819 -41.28636 -36.80552 -34.31173 -33.69200 -31.23597 -28.22808 -27.62270 -25.30787 -23.79473 -22.16271 -19.56462 -19.55114 -19.27915 -18.63476 -17.36841 -16.85012 -16.68091 -16.02541 -15.68010 -15.58477 -15.32169 -15.13112 -15.02264 -14.84776 -14.83177 -14.53119 -14.14059 -13.41207 -13.23129 -13.04023 -12.83302 -12.62979 -11.99223 -11.86576 -11.15323 -10.77192 -10.38421 -9.92301 -9.29599 -8.15697 -6.36610 -0.11361 0.15486 1.36931 1.40442 1.51115 1.53153 2.36368 2.58829 2.70247 2.93717 3.03770 3.35535 3.45296 3.91608 3.93798 4.13945 4.52250 4.59319 4.75700 4.89787 4.96013 5.41456 5.63990 5.65494 5.99098 6.57760 6.81246 7.02262 7.14884 7.37591 8.82201 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.036210 B = 0.006296 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.089223 B = 4446.011401 C = 4737.157955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.022 3.978 3 Si 0.961 3.039 4 H -0.276 1.276 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.046 0.954 9 C 0.253 3.747 10 H 0.025 0.975 11 N -0.838 5.838 12 C 0.149 3.851 13 C -0.124 4.124 14 C -0.151 4.151 15 C 0.522 3.478 16 F -0.175 7.175 17 F -0.169 7.169 18 F -0.177 7.177 19 C -0.135 4.135 20 C 0.096 3.904 21 N -0.486 5.486 22 H 0.269 0.731 23 H 0.321 0.679 24 H 0.353 0.647 25 H 0.153 0.847 26 H 0.179 0.821 27 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.387 -12.144 2.909 14.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.178 4.178 3 Si 0.787 3.213 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.064 0.936 9 C 0.142 3.858 10 H 0.043 0.957 11 N -0.368 5.368 12 C 0.012 3.988 13 C -0.144 4.144 14 C -0.160 4.160 15 C 0.467 3.533 16 F -0.156 7.156 17 F -0.150 7.150 18 F -0.158 7.158 19 C -0.154 4.154 20 C -0.062 4.062 21 N -0.196 5.196 22 H 0.078 0.922 23 H 0.131 0.869 24 H 0.169 0.831 25 H 0.171 0.829 26 H 0.196 0.804 27 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 7.019 -12.137 2.022 14.165 hybrid contribution 0.440 1.221 0.871 1.563 sum 7.458 -10.916 2.892 13.533 Atomic orbital electron populations 1.69824 1.06754 1.28018 1.50933 1.25689 0.95792 1.02235 0.94064 0.85458 0.78634 0.79417 0.77761 1.20032 1.20578 1.20174 1.21841 0.93173 0.91756 1.51667 0.93611 1.17611 0.88607 0.88398 0.91189 0.95730 1.59411 1.18042 1.55645 1.03718 1.21665 0.93278 0.94530 0.89356 1.21856 0.98956 0.93067 1.00547 1.20540 1.00700 0.96509 0.98286 1.17956 0.73841 0.80837 0.80622 1.93222 1.71979 1.60714 1.89705 1.93193 1.38302 1.88391 1.95140 1.93205 1.87699 1.85857 1.49034 1.22224 0.98208 1.01445 0.93525 1.23478 0.96168 0.88414 0.98134 1.67462 1.03324 1.24211 1.24555 0.92207 0.86904 0.83102 0.82898 0.80391 0.78603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.90 11.54 21.45 0.25 -49.65 15 2 C 0.02 1.19 5.38 84.65 0.46 1.65 15 3 Si 0.96 42.94 29.54 68.60 2.03 44.96 15 4 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 15 6 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 7 C -0.54 -29.47 8.53 25.60 0.22 -29.25 15 8 H 0.05 2.55 7.69 -2.91 -0.02 2.53 15 9 C 0.25 12.70 3.19 43.42 0.14 12.84 15 10 H 0.03 1.42 8.14 -2.39 -0.02 1.40 15 11 N -0.84 -38.55 7.94 -174.95 -1.39 -39.94 15 12 C 0.15 6.44 6.11 42.55 0.26 6.70 15 13 C -0.12 -4.55 8.57 22.36 0.19 -4.35 15 14 C -0.15 -4.51 5.48 -19.66 -0.11 -4.62 15 15 C 0.52 13.75 3.39 71.24 0.24 14.00 15 16 F -0.17 -4.61 17.30 44.97 0.78 -3.83 15 17 F -0.17 -3.97 16.56 44.97 0.74 -3.23 15 18 F -0.18 -4.97 16.56 44.97 0.74 -4.22 15 19 C -0.13 -3.43 9.49 22.36 0.21 -3.22 15 20 C 0.10 2.81 11.18 84.67 0.95 3.76 15 21 N -0.49 -19.78 9.97 -183.89 -1.83 -21.62 15 22 H 0.27 13.88 8.31 -92.70 -0.77 13.11 15 23 H 0.32 13.93 8.26 -89.70 -0.74 13.19 15 24 H 0.35 17.50 7.08 -89.69 -0.63 16.87 15 25 H 0.15 5.56 6.28 -2.91 -0.02 5.54 15 26 H 0.18 3.04 7.69 -2.91 -0.02 3.02 15 27 H 0.20 4.03 8.06 -2.91 -0.02 4.01 15 Total: -1.00 -58.56 253.55 3.74 -54.82 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: -0.13 Total: 25.21 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 2.56 Total: -2.50 kcal Atomic # 7 Polarization: -108.23 SS G_CDS: -2.98 Total: -111.21 kcal Atomic # 9 Polarization: -13.55 SS G_CDS: 2.27 Total: -11.28 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -58.56 3.74 -54.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095705652.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.595 kcal (2) G-P(sol) polarization free energy of solvation -58.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds