Wall clock time and date at job start Mon Mar 30 2020 06:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99626 * 2 1 4 4 H 1.48497 * 109.47159 * 269.99542 * 3 2 1 5 5 H 1.48502 * 109.47194 * 30.00255 * 3 2 1 6 6 H 1.48504 * 109.46753 * 149.99779 * 3 2 1 7 7 C 1.37880 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99707 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47156 * 60.00922 * 9 7 2 11 11 N 1.46892 * 109.47293 * 300.00281 * 9 7 2 12 12 C 1.50702 * 109.46674 * 180.02562 * 9 7 2 13 13 C 1.38223 * 119.61920 * 124.98199 * 12 9 7 14 14 C 1.38628 * 119.16031 * 180.02562 * 13 12 9 15 15 C 1.38672 * 118.42475 * 359.97438 * 14 13 12 16 16 C 1.38186 * 119.15778 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.61394 * 180.27597 * 16 15 14 18 18 F 1.39897 * 109.46909 * 184.72673 * 17 16 15 19 19 F 1.39906 * 109.47003 * 304.72172 * 17 16 15 20 20 F 1.39895 * 109.47259 * 64.72139 * 17 16 15 21 21 N 1.31856 * 119.61623 * 304.99996 * 12 9 7 22 22 H 0.96993 * 120.00014 * 0.02562 * 1 2 3 23 23 H 1.00903 * 111.00131 * 176.05394 * 11 9 7 24 24 H 1.00905 * 111.00382 * 299.99828 * 11 9 7 25 25 H 1.07996 * 120.41822 * 0.03714 * 13 12 9 26 26 H 1.08006 * 120.78822 * 180.02562 * 14 13 12 27 27 H 1.07992 * 120.42157 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6242 -2.5568 -0.8904 11 7 0.4070 -2.5772 1.1991 12 6 2.2305 -3.6446 -0.0005 13 6 2.1508 -4.6115 0.9840 14 6 3.0569 -5.6606 0.9752 15 6 4.0132 -5.6986 -0.0283 16 6 4.0314 -4.6961 -0.9792 17 6 5.0623 -4.7305 -2.0780 18 9 4.9581 -3.5695 -2.8515 19 9 6.3412 -4.8028 -1.5154 20 9 4.8445 -5.8509 -2.8868 21 7 3.1537 -3.7125 -0.9395 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1569 -3.4140 1.1907 24 1 0.9652 -2.5260 2.0381 25 1 1.3922 -4.5505 1.7502 26 1 3.0184 -6.4307 1.7315 27 1 4.7345 -6.5013 -0.0662 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095705707.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:01 Heat of formation + Delta-G solvation = -127.775547 kcal Electronic energy + Delta-G solvation = -17704.847013 eV Core-core repulsion = 14240.103451 eV Total energy + Delta-G solvation = -3464.743561 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -51.21932 -48.74502 -48.68153 -41.40004 -36.75510 -34.00787 -33.63456 -31.85686 -28.28453 -27.42953 -25.35774 -23.59150 -22.32467 -19.61841 -19.51462 -19.27425 -18.58510 -17.41837 -17.05506 -16.62800 -16.20290 -15.68765 -15.47288 -15.41787 -15.14283 -14.86214 -14.84877 -14.84258 -14.53331 -14.16061 -13.68247 -13.34682 -12.92900 -12.76555 -12.54711 -11.89342 -11.41897 -10.97684 -10.62080 -10.51387 -10.04401 -9.04558 -8.00467 -6.18743 -0.22206 0.26005 1.41436 1.43455 1.43997 1.52106 2.42110 2.48563 2.57010 2.92181 3.23781 3.36052 3.65902 3.88756 4.00088 4.04140 4.32754 4.40764 4.64082 4.94943 5.06824 5.33234 5.56250 5.75528 6.11634 6.52858 6.92171 7.06458 7.22146 7.51666 9.03504 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.024894 B = 0.007838 C = 0.006473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.512400 B = 3571.581711 C = 4324.827195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.038 3.962 3 Si 0.945 3.055 4 H -0.281 1.281 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.531 4.531 8 H 0.038 0.962 9 C 0.270 3.730 10 H 0.021 0.979 11 N -0.812 5.812 12 C 0.110 3.890 13 C -0.158 4.158 14 C -0.056 4.056 15 C -0.137 4.137 16 C 0.009 3.991 17 C 0.524 3.476 18 F -0.178 7.178 19 F -0.169 7.169 20 F -0.169 7.169 21 N -0.473 5.473 22 H 0.257 0.743 23 H 0.321 0.679 24 H 0.331 0.669 25 H 0.161 0.839 26 H 0.193 0.807 27 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.569 -14.031 2.365 16.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.166 4.166 3 Si 0.771 3.229 4 H -0.207 1.207 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.570 4.570 8 H 0.057 0.943 9 C 0.159 3.841 10 H 0.038 0.962 11 N -0.341 5.341 12 C -0.030 4.030 13 C -0.177 4.177 14 C -0.081 4.081 15 C -0.157 4.157 16 C -0.130 4.130 17 C 0.469 3.531 18 F -0.160 7.160 19 F -0.150 7.150 20 F -0.151 7.151 21 N -0.182 5.182 22 H 0.066 0.934 23 H 0.134 0.866 24 H 0.144 0.856 25 H 0.179 0.821 26 H 0.210 0.790 27 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 7.096 -12.582 1.438 14.517 hybrid contribution 1.013 -0.238 0.234 1.067 sum 8.109 -12.820 1.672 15.261 Atomic orbital electron populations 1.70184 1.06670 1.26453 1.47995 1.25568 0.95464 1.01464 0.94074 0.85799 0.78761 0.80426 0.77923 1.20742 1.20357 1.20013 1.20913 0.91681 0.90800 1.53654 0.94330 1.17722 0.87073 0.88733 0.90554 0.96181 1.58896 1.27844 1.43653 1.03679 1.23241 0.93563 0.96613 0.89602 1.22472 1.01279 0.94494 0.99502 1.22050 0.91295 0.97506 0.97297 1.22078 1.00911 0.98606 0.94107 1.21247 0.97924 0.96192 0.97662 1.17965 0.80230 0.73693 0.81204 1.93209 1.96025 1.49877 1.76849 1.93204 1.40857 1.96018 1.84955 1.93203 1.94701 1.52415 1.74745 1.66983 1.03060 1.22116 1.26084 0.93410 0.86556 0.85568 0.82114 0.78992 0.80721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.09 12.77 21.45 0.27 -50.82 15 2 C 0.04 2.15 5.39 84.66 0.46 2.60 15 3 Si 0.94 45.04 29.54 68.60 2.03 47.06 15 4 H -0.28 -13.37 7.11 99.48 0.71 -12.66 15 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 15 6 H -0.28 -12.96 7.11 99.48 0.71 -12.25 15 7 C -0.53 -29.89 8.53 25.60 0.22 -29.67 15 8 H 0.04 2.25 7.68 -2.91 -0.02 2.23 15 9 C 0.27 13.34 3.10 43.43 0.13 13.48 15 10 H 0.02 1.16 8.14 -2.39 -0.02 1.14 15 11 N -0.81 -34.81 7.83 -174.96 -1.37 -36.18 15 12 C 0.11 4.56 6.11 42.55 0.26 4.82 15 13 C -0.16 -4.66 9.07 22.36 0.20 -4.45 15 14 C -0.06 -1.23 10.18 22.47 0.23 -1.01 15 15 C -0.14 -3.38 9.61 22.36 0.21 -3.17 15 16 C 0.01 0.32 6.26 42.54 0.27 0.59 15 17 C 0.52 16.82 3.31 71.24 0.24 17.06 15 18 F -0.18 -6.78 16.85 44.97 0.76 -6.02 15 19 F -0.17 -4.86 17.16 44.97 0.77 -4.09 15 20 F -0.17 -4.87 17.28 44.97 0.78 -4.09 15 21 N -0.47 -20.38 9.34 -172.07 -1.61 -21.99 15 22 H 0.26 14.29 8.31 -92.71 -0.77 13.52 15 23 H 0.32 11.44 8.09 -89.69 -0.73 10.71 15 24 H 0.33 13.12 8.26 -89.69 -0.74 12.38 15 25 H 0.16 3.92 6.20 -2.91 -0.02 3.90 15 26 H 0.19 2.21 8.06 -2.91 -0.02 2.18 15 27 H 0.18 2.90 8.06 -2.91 -0.02 2.88 15 Total: -1.00 -67.54 256.45 3.62 -63.92 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -0.22 Total: 11.97 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 2.22 Total: 0.25 kcal Atomic # 7 Polarization: -106.29 SS G_CDS: -2.70 Total: -108.99 kcal Atomic # 9 Polarization: -16.51 SS G_CDS: 2.31 Total: -14.21 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -67.54 3.62 -63.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095705707.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.858 kcal (2) G-P(sol) polarization free energy of solvation -67.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds