Wall clock time and date at job start Mon Mar 30 2020 06:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48495 * 109.46891 * 29.99921 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 11 11 N 1.46896 * 109.46997 * 300.00267 * 9 7 2 12 12 C 1.50701 * 109.47064 * 180.02562 * 9 7 2 13 13 C 1.38228 * 120.41610 * 79.72000 * 12 9 7 14 14 N 1.31856 * 120.76234 * 179.77009 * 13 12 9 15 15 C 1.31885 * 121.72172 * 0.49879 * 14 13 12 16 16 C 1.38179 * 120.77062 * 359.76966 * 15 14 13 17 17 C 1.50697 * 120.42158 * 179.97438 * 16 15 14 18 18 F 1.39889 * 109.47539 * 269.97802 * 17 16 15 19 19 F 1.39902 * 109.46947 * 29.98381 * 17 16 15 20 20 F 1.39908 * 109.47075 * 149.97423 * 17 16 15 21 21 C 1.38628 * 120.42078 * 260.00034 * 12 9 7 22 22 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 23 23 H 1.00900 * 111.00550 * 300.00040 * 11 9 7 24 24 H 1.00896 * 111.00310 * 63.95626 * 11 9 7 25 25 H 1.07997 * 119.62057 * 0.02709 * 13 12 9 26 26 H 1.08006 * 119.61509 * 179.74539 * 15 14 13 27 27 H 1.08003 * 120.78811 * 0.02562 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8745 -0.6801 0.8912 11 7 4.0016 -0.5018 -1.1982 12 6 4.0138 -2.6149 0.0010 13 6 4.0470 -3.3454 -1.1721 14 7 4.4893 -4.5875 -1.1808 15 6 4.9056 -5.1831 -0.0802 16 6 4.8966 -4.5174 1.1306 17 6 5.3735 -5.2058 2.3834 18 9 4.2963 -5.8509 3.0001 19 9 6.3543 -6.1474 2.0536 20 9 5.9132 -4.2580 3.2597 21 6 4.4430 -3.2078 1.1783 22 1 -0.4850 0.8401 -0.0004 23 1 3.6784 -0.9594 -2.0374 24 1 3.7323 0.4705 -1.1900 25 1 3.7105 -2.8921 -2.0928 26 1 5.2574 -6.2033 -0.1258 27 1 4.4239 -2.6629 2.1106 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095705872.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:03 Heat of formation + Delta-G solvation = -114.513490 kcal Electronic energy + Delta-G solvation = -17614.625831 eV Core-core repulsion = 14150.457356 eV Total energy + Delta-G solvation = -3464.168475 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.08172 -47.60863 -47.53423 -40.05363 -35.58275 -32.80007 -32.23367 -30.51435 -26.56170 -26.02213 -23.74173 -22.81679 -20.58622 -18.42152 -18.39775 -17.82754 -17.27308 -16.65650 -16.04030 -15.37838 -14.52090 -14.36703 -14.31014 -14.00461 -13.75770 -13.71363 -13.62670 -13.45099 -12.93767 -12.82324 -12.58617 -11.97783 -11.85633 -11.04016 -10.95353 -10.53225 -9.82132 -9.75151 -9.23789 -8.94894 -8.77279 -7.74792 -6.39201 -4.45967 1.04587 1.52166 2.73613 3.02080 3.15812 3.17999 3.79357 3.88656 4.08439 4.10167 4.53168 4.64641 4.87601 4.99786 5.17584 5.31007 5.62667 5.72109 5.92796 6.13682 6.31146 6.78095 6.93364 7.23121 7.81090 8.03109 8.11843 8.26510 8.65434 9.17684 10.72856 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.033125 B = 0.006614 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.087715 B = 4232.501596 C = 4466.751404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.078 3.922 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.258 1.258 7 C -0.555 4.555 8 H 0.077 0.923 9 C 0.211 3.789 10 H 0.057 0.943 11 N -0.849 5.849 12 C -0.067 4.067 13 C 0.138 3.862 14 N -0.483 5.483 15 C 0.125 3.875 16 C -0.242 4.242 17 C 0.517 3.483 18 F -0.177 7.177 19 F -0.179 7.179 20 F -0.178 7.178 21 C -0.032 4.032 22 H 0.269 0.731 23 H 0.332 0.668 24 H 0.323 0.677 25 H 0.163 0.837 26 H 0.158 0.842 27 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.854 -6.857 2.182 12.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.183 1.183 7 C -0.595 4.595 8 H 0.095 0.905 9 C 0.101 3.899 10 H 0.074 0.926 11 N -0.383 5.383 12 C -0.070 4.070 13 C -0.019 4.019 14 N -0.190 5.190 15 C -0.033 4.033 16 C -0.246 4.246 17 C 0.462 3.538 18 F -0.158 7.158 19 F -0.161 7.161 20 F -0.159 7.159 21 C -0.058 4.058 22 H 0.079 0.921 23 H 0.145 0.855 24 H 0.139 0.861 25 H 0.180 0.820 26 H 0.175 0.825 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 10.435 -7.388 1.694 12.898 hybrid contribution -0.777 1.439 0.903 1.868 sum 9.658 -5.950 2.597 11.637 Atomic orbital electron populations 1.69879 1.06249 1.27528 1.48172 1.25014 0.94864 0.99079 0.93795 0.87011 0.80378 0.83711 0.78814 1.19878 1.21488 1.18290 1.21537 0.89025 0.95219 1.53706 0.90450 1.18456 0.93982 0.86063 0.91369 0.92570 1.59715 1.66902 1.06020 1.05693 1.21062 0.94356 0.98951 0.92582 1.22823 0.91802 0.88641 0.98590 1.67838 1.10836 1.11224 1.29143 1.22383 0.94737 0.99560 0.86642 1.20913 1.11481 0.97922 0.94255 1.18141 0.75064 0.76608 0.83960 1.93223 1.55554 1.82468 1.84552 1.93169 1.63712 1.66680 1.92515 1.93188 1.86496 1.64532 1.71673 1.21253 0.92539 0.92207 0.99821 0.92071 0.85537 0.86076 0.82001 0.82454 0.83909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.13 13.96 55.43 0.77 -24.36 15 2 C 0.08 2.05 5.47 -17.82 -0.10 1.95 15 3 Si 0.87 19.48 24.61 -169.99 -4.18 15.29 15 4 H -0.27 -5.81 7.01 56.52 0.40 -5.41 15 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.26 -5.57 6.54 56.52 0.37 -5.20 15 7 C -0.56 -14.21 9.29 -34.44 -0.32 -14.53 15 8 H 0.08 2.20 7.98 -52.49 -0.42 1.79 15 9 C 0.21 4.53 2.50 -70.02 -0.17 4.35 15 10 H 0.06 1.24 7.09 -51.93 -0.37 0.87 15 11 N -0.85 -16.85 8.98 -6.65 -0.06 -16.91 15 12 C -0.07 -1.28 4.90 -104.48 -0.51 -1.80 15 13 C 0.14 2.48 10.46 -17.54 -0.18 2.29 15 14 N -0.48 -8.27 10.36 -13.25 -0.14 -8.41 15 15 C 0.12 1.92 10.56 -17.55 -0.19 1.73 15 16 C -0.24 -3.78 5.46 -104.48 -0.57 -4.35 15 17 C 0.52 7.28 3.38 36.00 0.12 7.40 15 18 F -0.18 -2.57 17.30 2.25 0.04 -2.54 15 19 F -0.18 -2.34 16.49 2.25 0.04 -2.31 15 20 F -0.18 -2.53 16.54 2.25 0.04 -2.49 15 21 C -0.03 -0.56 9.17 -39.28 -0.36 -0.92 15 22 H 0.27 7.18 8.31 -40.82 -0.34 6.85 15 23 H 0.33 6.12 7.37 -39.29 -0.29 5.83 15 24 H 0.32 6.58 4.30 -39.29 -0.17 6.41 15 25 H 0.16 2.71 6.69 -52.49 -0.35 2.36 15 26 H 0.16 1.95 7.61 -52.48 -0.40 1.55 15 27 H 0.14 2.30 7.69 -52.48 -0.40 1.90 15 LS Contribution 247.13 15.07 3.72 3.72 Total: -1.00 -27.46 247.13 -3.62 -31.09 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -1.57 Total: 10.77 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -2.28 Total: -3.86 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.58 Total: -49.68 kcal Atomic # 9 Polarization: -7.45 SS G_CDS: 0.11 Total: -7.33 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.18 Total: 15.29 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -27.46 -3.62 -31.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095705872.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.425 kcal (2) G-P(sol) polarization free energy of solvation -27.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds