Wall clock time and date at job start Mon Mar 30 2020 06:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48495 * 109.46891 * 29.99921 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 11 11 N 1.46896 * 109.46997 * 300.00267 * 9 7 2 12 12 C 1.50701 * 109.47064 * 180.02562 * 9 7 2 13 13 C 1.38228 * 120.41610 * 79.72000 * 12 9 7 14 14 N 1.31856 * 120.76234 * 179.77009 * 13 12 9 15 15 C 1.31885 * 121.72172 * 0.49879 * 14 13 12 16 16 C 1.38179 * 120.77062 * 359.76966 * 15 14 13 17 17 C 1.50697 * 120.42158 * 179.97438 * 16 15 14 18 18 F 1.39889 * 109.47539 * 269.97802 * 17 16 15 19 19 F 1.39902 * 109.46947 * 29.98381 * 17 16 15 20 20 F 1.39908 * 109.47075 * 149.97423 * 17 16 15 21 21 C 1.38628 * 120.42078 * 260.00034 * 12 9 7 22 22 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 23 23 H 1.00900 * 111.00550 * 300.00040 * 11 9 7 24 24 H 1.00896 * 111.00310 * 63.95626 * 11 9 7 25 25 H 1.07997 * 119.62057 * 0.02709 * 13 12 9 26 26 H 1.08006 * 119.61509 * 179.74539 * 15 14 13 27 27 H 1.08003 * 120.78811 * 0.02562 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8745 -0.6801 0.8912 11 7 4.0016 -0.5018 -1.1982 12 6 4.0138 -2.6149 0.0010 13 6 4.0470 -3.3454 -1.1721 14 7 4.4893 -4.5875 -1.1808 15 6 4.9056 -5.1831 -0.0802 16 6 4.8966 -4.5174 1.1306 17 6 5.3735 -5.2058 2.3834 18 9 4.2963 -5.8509 3.0001 19 9 6.3543 -6.1474 2.0536 20 9 5.9132 -4.2580 3.2597 21 6 4.4430 -3.2078 1.1783 22 1 -0.4850 0.8401 -0.0004 23 1 3.6784 -0.9594 -2.0374 24 1 3.7323 0.4705 -1.1900 25 1 3.7105 -2.8921 -2.0928 26 1 5.2574 -6.2033 -0.1258 27 1 4.4239 -2.6629 2.1106 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095705872.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:03 Heat of formation + Delta-G solvation = -133.777186 kcal Electronic energy + Delta-G solvation = -17615.461168 eV Core-core repulsion = 14150.457356 eV Total energy + Delta-G solvation = -3465.003812 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -51.20958 -48.71376 -48.67519 -41.40900 -37.24865 -34.20259 -34.07146 -31.98478 -28.30453 -27.35466 -25.28009 -24.19536 -22.08015 -19.60059 -19.54234 -19.14305 -19.10404 -17.96471 -17.53334 -17.00865 -16.10007 -15.62593 -15.47419 -15.25671 -15.11640 -14.90972 -14.88098 -14.82061 -14.47884 -14.20569 -13.97007 -13.58520 -13.52176 -12.83411 -12.54748 -12.19643 -11.71139 -11.09107 -10.93572 -10.62292 -10.19919 -9.44585 -8.42269 -6.53299 -0.27610 0.15609 1.26081 1.34948 1.43011 1.56238 2.20203 2.54366 2.60964 2.90007 2.95251 3.37026 3.39980 3.67515 3.75591 3.94039 4.19539 4.22133 4.52234 4.77973 4.83557 5.25170 5.37862 5.47063 5.96555 6.28804 6.50654 6.64235 6.76714 7.14457 8.73528 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.033125 B = 0.006614 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.087715 B = 4232.501596 C = 4466.751404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.022 3.978 3 Si 0.937 3.063 4 H -0.252 1.252 5 H -0.295 1.295 6 H -0.243 1.243 7 C -0.554 4.554 8 H 0.033 0.967 9 C 0.220 3.780 10 H 0.054 0.946 11 N -0.838 5.838 12 C -0.094 4.094 13 C 0.133 3.867 14 N -0.492 5.492 15 C 0.133 3.867 16 C -0.241 4.241 17 C 0.528 3.472 18 F -0.178 7.178 19 F -0.169 7.169 20 F -0.177 7.177 21 C -0.035 4.035 22 H 0.270 0.730 23 H 0.341 0.659 24 H 0.322 0.678 25 H 0.168 0.832 26 H 0.192 0.808 27 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.800 -7.059 2.193 13.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.177 1.177 5 H -0.222 1.222 6 H -0.167 1.167 7 C -0.593 4.593 8 H 0.052 0.948 9 C 0.109 3.891 10 H 0.072 0.928 11 N -0.372 5.372 12 C -0.096 4.096 13 C -0.022 4.022 14 N -0.199 5.199 15 C -0.025 4.025 16 C -0.245 4.245 17 C 0.473 3.527 18 F -0.160 7.160 19 F -0.150 7.150 20 F -0.158 7.158 21 C -0.062 4.062 22 H 0.079 0.921 23 H 0.154 0.846 24 H 0.138 0.862 25 H 0.185 0.815 26 H 0.209 0.791 27 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 12.406 -7.607 1.689 14.650 hybrid contribution -1.383 1.343 0.918 2.135 sum 11.023 -6.264 2.606 12.944 Atomic orbital electron populations 1.70036 1.08279 1.28551 1.50408 1.25871 0.95505 1.03009 0.93405 0.85974 0.79301 0.78642 0.79937 1.17735 1.22183 1.16666 1.21749 0.91445 0.93437 1.52675 0.94822 1.18230 0.91070 0.87947 0.91837 0.92819 1.59662 1.66227 1.05824 1.05499 1.20904 0.96665 0.98160 0.93895 1.22911 0.91736 0.89087 0.98513 1.67906 1.11291 1.10745 1.29975 1.22964 0.92953 1.00658 0.85955 1.21020 1.10918 0.97308 0.95228 1.17828 0.75111 0.76582 0.83227 1.93227 1.55793 1.82456 1.84501 1.93194 1.63219 1.66210 1.92406 1.93195 1.86452 1.64625 1.71569 1.21403 0.92098 0.93089 0.99568 0.92064 0.84614 0.86230 0.81512 0.79140 0.83149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.64 13.96 21.45 0.30 -54.35 15 2 C 0.02 1.19 5.47 84.65 0.46 1.65 15 3 Si 0.94 39.71 24.61 68.60 1.69 41.40 15 4 H -0.25 -9.83 7.01 99.48 0.70 -9.14 15 5 H -0.29 -12.76 7.11 99.48 0.71 -12.06 15 6 H -0.24 -9.62 6.54 99.48 0.65 -8.97 15 7 C -0.55 -28.80 9.29 25.60 0.24 -28.56 15 8 H 0.03 2.00 7.98 -2.91 -0.02 1.97 15 9 C 0.22 9.27 2.50 43.43 0.11 9.38 15 10 H 0.05 2.29 7.09 -2.39 -0.02 2.28 15 11 N -0.84 -31.85 8.98 -174.95 -1.57 -33.43 15 12 C -0.09 -3.52 4.90 -19.77 -0.10 -3.62 15 13 C 0.13 4.67 10.46 84.69 0.89 5.56 15 14 N -0.49 -15.96 10.36 -195.84 -2.03 -17.99 15 15 C 0.13 3.72 10.56 84.67 0.89 4.62 15 16 C -0.24 -7.02 5.46 -19.78 -0.11 -7.12 15 17 C 0.53 13.53 3.38 71.23 0.24 13.78 15 18 F -0.18 -4.81 17.30 44.97 0.78 -4.04 15 19 F -0.17 -3.89 16.49 44.97 0.74 -3.14 15 20 F -0.18 -4.65 16.54 44.97 0.74 -3.90 15 21 C -0.04 -1.19 9.17 22.47 0.21 -0.98 15 22 H 0.27 14.79 8.31 -92.71 -0.77 14.02 15 23 H 0.34 12.09 7.37 -89.69 -0.66 11.42 15 24 H 0.32 12.33 4.30 -89.70 -0.39 11.94 15 25 H 0.17 5.48 6.69 -2.91 -0.02 5.47 15 26 H 0.19 3.99 7.61 -2.91 -0.02 3.97 15 27 H 0.15 4.68 7.69 -2.91 -0.02 4.66 15 Total: -1.00 -58.79 247.13 3.62 -55.18 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.13 Total: 25.56 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 2.83 Total: -5.29 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -3.30 Total: -105.76 kcal Atomic # 9 Polarization: -13.35 SS G_CDS: 2.26 Total: -11.08 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 1.69 Total: 41.40 kcal Total: -58.79 3.62 -55.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095705872.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.602 kcal (2) G-P(sol) polarization free energy of solvation -58.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds