Wall clock time and date at job start Mon Mar 30 2020 06:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00011 * 2 1 4 4 H 1.48495 * 109.47210 * 270.00198 * 3 2 1 5 5 H 1.48503 * 109.46960 * 30.00390 * 3 2 1 6 6 H 1.48498 * 109.47006 * 149.99756 * 3 2 1 7 7 C 1.37879 * 120.00312 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99719 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99997 * 180.02562 * 7 2 1 10 10 H 1.08995 * 109.47594 * 59.99829 * 9 7 2 11 11 N 1.46900 * 109.46811 * 299.99524 * 9 7 2 12 12 C 1.50704 * 109.46835 * 179.97438 * 9 7 2 13 13 C 1.38675 * 120.41697 * 259.99526 * 12 9 7 14 14 C 1.38628 * 118.42013 * 180.02562 * 13 12 9 15 15 C 1.38220 * 119.16326 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.61936 * 180.02562 * 15 14 13 17 17 F 1.39901 * 109.47024 * 184.99998 * 16 15 14 18 18 F 1.39893 * 109.47043 * 304.99733 * 16 15 14 19 19 F 1.39898 * 109.47092 * 65.00131 * 16 15 14 20 20 N 1.31857 * 120.76198 * 0.02562 * 15 14 13 21 21 C 1.31883 * 121.72627 * 359.97438 * 20 15 14 22 22 H 0.97003 * 120.00261 * 0.02562 * 1 2 3 23 23 H 1.00897 * 110.99758 * 176.04883 * 11 9 7 24 24 H 1.00901 * 110.99735 * 300.00145 * 11 9 7 25 25 H 1.07998 * 120.78542 * 359.75048 * 13 12 9 26 26 H 1.07996 * 120.41751 * 179.97438 * 14 13 12 27 27 H 1.08007 * 119.61759 * 180.02562 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 1 3.8746 -0.6807 0.8904 11 7 4.0016 -0.5007 -1.1988 12 6 4.0139 -2.6148 -0.0001 13 6 4.4434 -3.2077 1.1777 14 6 4.8978 -4.5166 1.1299 15 6 4.9072 -5.1825 -0.0813 16 6 5.3986 -6.6057 -0.1449 17 9 5.4241 -7.0311 -1.4775 18 9 6.6881 -6.6783 0.3924 19 9 4.5396 -7.4290 0.5910 20 7 4.4912 -4.5869 -1.1817 21 6 4.0525 -3.3432 -1.1736 22 1 -0.4851 0.8400 -0.0004 23 1 5.0081 -0.4306 -1.1899 24 1 3.6784 -0.9578 -2.0383 25 1 4.4284 -2.6613 2.1091 26 1 5.2402 -5.0096 2.0277 27 1 3.7194 -2.8887 -2.0951 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095705919.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:15 Heat of formation + Delta-G solvation = -136.168332 kcal Electronic energy + Delta-G solvation = -17472.640737 eV Core-core repulsion = 14007.533237 eV Total energy + Delta-G solvation = -3465.107500 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -51.23126 -48.75191 -48.69806 -41.49037 -37.17811 -34.19115 -33.51679 -32.25005 -28.68906 -27.31091 -25.12161 -23.98892 -22.10897 -19.75523 -19.61912 -19.54596 -19.00255 -17.54188 -17.02426 -16.35188 -15.94256 -15.88474 -15.71177 -15.47488 -15.14881 -14.99509 -14.86913 -14.85474 -14.64574 -14.35200 -13.92244 -13.67300 -13.11830 -12.71412 -12.44702 -11.87104 -11.56831 -10.89982 -10.82290 -10.70824 -10.19257 -9.44212 -8.25456 -6.41603 -0.29092 0.11519 1.40526 1.55920 1.62315 1.74850 2.41319 2.45845 2.52774 2.87163 3.09505 3.32804 3.58913 3.80810 3.91446 3.97455 4.13460 4.22003 4.49661 4.85601 4.91890 5.24488 5.44329 5.50318 6.08268 6.39149 6.57058 6.73096 6.93494 7.36272 8.87319 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.047948 B = 0.005626 C = 0.005551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.823157 B = 4975.474869 C = 5043.031054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.031 3.969 3 Si 1.001 2.999 4 H -0.278 1.278 5 H -0.328 1.328 6 H -0.252 1.252 7 C -0.520 4.520 8 H 0.029 0.971 9 C 0.228 3.772 10 H 0.063 0.937 11 N -0.843 5.843 12 C -0.101 4.101 13 C -0.076 4.076 14 C -0.109 4.109 15 C -0.005 4.005 16 C 0.531 3.469 17 F -0.173 7.173 18 F -0.167 7.167 19 F -0.173 7.173 20 N -0.464 5.464 21 C 0.094 3.906 22 H 0.266 0.734 23 H 0.337 0.663 24 H 0.343 0.657 25 H 0.168 0.832 26 H 0.175 0.825 27 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.847 -8.442 1.988 16.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.169 4.169 3 Si 0.831 3.169 4 H -0.204 1.204 5 H -0.259 1.259 6 H -0.176 1.176 7 C -0.558 4.558 8 H 0.047 0.953 9 C 0.117 3.883 10 H 0.081 0.919 11 N -0.375 5.375 12 C -0.105 4.105 13 C -0.102 4.102 14 C -0.129 4.129 15 C -0.143 4.143 16 C 0.476 3.524 17 F -0.154 7.154 18 F -0.148 7.148 19 F -0.154 7.154 20 N -0.172 5.172 21 C -0.064 4.064 22 H 0.075 0.925 23 H 0.151 0.849 24 H 0.157 0.843 25 H 0.185 0.815 26 H 0.193 0.807 27 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 13.334 -8.247 1.441 15.745 hybrid contribution 0.120 -0.051 0.325 0.351 sum 13.454 -8.298 1.766 15.906 Atomic orbital electron populations 1.70080 1.08759 1.28399 1.51218 1.25851 0.95095 1.03690 0.92244 0.84831 0.77643 0.76257 0.78169 1.20373 1.25851 1.17580 1.20875 0.89654 0.92761 1.52521 0.95279 1.18450 0.93392 0.84500 0.91964 0.91896 1.59051 1.15100 1.57902 1.05466 1.22364 0.93182 1.00504 0.94481 1.21877 0.94670 0.94324 0.99362 1.22041 0.97577 0.95182 0.98122 1.21051 1.06060 0.94645 0.92570 1.17744 0.75319 0.85517 0.73829 1.93197 1.96193 1.91172 1.34834 1.93217 1.38793 1.96756 1.86081 1.93223 1.70356 1.74452 1.77365 1.67124 1.08751 1.11507 1.29830 1.22611 0.96084 0.88418 0.99277 0.92549 0.84899 0.84253 0.81467 0.80748 0.81573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.84 13.96 21.45 0.30 -56.54 15 2 C 0.03 1.69 5.47 84.66 0.46 2.16 15 3 Si 1.00 45.36 26.03 68.60 1.79 47.15 15 4 H -0.28 -12.48 7.11 99.48 0.71 -11.77 15 5 H -0.33 -15.35 7.11 99.48 0.71 -14.64 15 6 H -0.25 -10.35 6.54 99.48 0.65 -9.70 15 7 C -0.52 -26.90 9.29 25.60 0.24 -26.66 15 8 H 0.03 1.72 7.98 -2.91 -0.02 1.70 15 9 C 0.23 8.92 2.36 43.42 0.10 9.02 15 10 H 0.06 2.44 7.09 -2.39 -0.02 2.42 15 11 N -0.84 -29.30 6.59 -174.95 -1.15 -30.45 15 12 C -0.10 -3.44 4.89 -19.77 -0.10 -3.54 15 13 C -0.08 -2.17 9.82 22.47 0.22 -1.95 15 14 C -0.11 -2.80 9.61 22.36 0.21 -2.58 15 15 C 0.00 -0.14 6.26 42.55 0.27 0.13 15 16 C 0.53 14.25 3.32 71.24 0.24 14.48 15 17 F -0.17 -5.06 16.85 44.97 0.76 -4.31 15 18 F -0.17 -3.99 17.16 44.97 0.77 -3.22 15 19 F -0.17 -4.53 17.28 44.97 0.78 -3.76 15 20 N -0.46 -15.69 9.74 -183.89 -1.79 -17.48 15 21 C 0.09 3.20 10.46 84.67 0.89 4.08 15 22 H 0.27 15.11 8.31 -92.71 -0.77 14.34 15 23 H 0.34 9.45 9.06 -89.70 -0.81 8.64 15 24 H 0.34 11.48 7.37 -89.69 -0.66 10.82 15 25 H 0.17 3.94 8.06 -2.91 -0.02 3.92 15 26 H 0.18 3.15 8.06 -2.91 -0.02 3.12 15 27 H 0.17 5.33 6.68 -2.91 -0.02 5.31 15 Total: -1.00 -63.00 252.47 3.69 -59.31 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -0.29 Total: 14.15 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 2.53 Total: -4.85 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -2.64 Total: -104.48 kcal Atomic # 9 Polarization: -13.59 SS G_CDS: 2.31 Total: -11.28 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.79 Total: 47.15 kcal Total: -63.00 3.69 -59.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095705919.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.857 kcal (2) G-P(sol) polarization free energy of solvation -63.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds