Wall clock time and date at job start Mon Mar 30 2020 06:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 11 11 N 1.46904 * 109.46860 * 60.28074 * 9 7 2 12 12 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 13 13 C 1.38225 * 119.61708 * 125.00267 * 12 9 7 14 14 C 1.38627 * 119.16101 * 179.97438 * 13 12 9 15 15 C 1.50702 * 120.78998 * 179.97438 * 14 13 12 16 16 F 1.39899 * 109.47170 * 89.99758 * 15 14 13 17 17 F 1.39903 * 109.46936 * 210.00118 * 15 14 13 18 18 F 1.39896 * 109.46919 * 330.00031 * 15 14 13 19 19 C 1.38672 * 118.41991 * 359.97438 * 14 13 12 20 20 C 1.38183 * 119.16570 * 0.02562 * 19 14 13 21 21 N 1.31849 * 119.61654 * 304.72989 * 12 9 7 22 22 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 23 23 H 1.00906 * 110.99862 * 60.00007 * 11 9 7 24 24 H 1.00899 * 111.00096 * 183.94896 * 11 9 7 25 25 H 1.08004 * 120.42038 * 359.95752 * 13 12 9 26 26 H 1.08002 * 120.41914 * 179.97438 * 19 14 13 27 27 H 1.08000 * 119.61704 * 179.97438 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 1 3.8713 -0.6783 -0.8962 11 7 4.0062 -0.5038 1.1930 12 6 4.0139 -2.6148 -0.0107 13 6 4.8874 -3.0271 -0.9995 14 6 5.3440 -4.3360 -0.9947 15 6 6.2964 -4.8247 -2.0554 16 9 7.6133 -4.6166 -1.6314 17 9 6.0878 -6.1904 -2.2760 18 9 6.0723 -4.1208 -3.2434 19 6 4.9034 -5.1850 0.0094 20 6 4.0297 -4.7017 0.9647 21 7 3.6195 -3.4486 0.9313 22 1 -0.4850 0.8400 -0.0004 23 1 3.6862 -0.9631 2.0325 24 1 5.0127 -0.4338 1.1805 25 1 5.2098 -2.3383 -1.7664 26 1 5.2383 -6.2112 0.0439 27 1 3.6816 -5.3567 1.7497 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095714957.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:58 Heat of formation + Delta-G solvation = -107.472324 kcal Electronic energy + Delta-G solvation = -17592.999625 eV Core-core repulsion = 14129.136477 eV Total energy + Delta-G solvation = -3463.863148 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.24304 -47.75283 -47.71346 -40.11985 -35.12216 -33.01637 -31.89794 -30.36714 -26.77370 -26.34926 -23.49297 -22.89303 -20.54012 -18.58350 -18.55012 -18.01702 -16.95944 -15.88526 -15.77645 -14.98512 -14.65034 -14.58859 -14.42458 -14.17460 -14.13557 -13.93061 -13.86462 -13.62533 -13.36266 -12.40981 -12.24385 -12.07730 -11.65207 -10.82528 -10.46670 -10.12551 -9.91049 -9.39822 -9.15959 -8.76343 -8.55388 -7.30462 -6.00936 -4.10792 0.99693 1.25934 2.54649 3.49357 3.60406 3.60581 3.83395 3.90713 3.93689 4.35537 4.61590 4.68722 4.93951 5.00342 5.18619 5.31191 5.60404 5.84284 5.86047 5.88771 6.05828 6.70705 6.80666 7.47366 8.08588 8.25313 8.30257 8.65806 9.00596 9.61239 11.08798 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.034630 B = 0.006514 C = 0.006175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.348397 B = 4297.275575 C = 4533.637171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.085 3.915 3 Si 0.865 3.135 4 H -0.296 1.296 5 H -0.303 1.303 6 H -0.193 1.193 7 C -0.513 4.513 8 H 0.073 0.927 9 C 0.231 3.769 10 H 0.054 0.946 11 N -0.826 5.826 12 C 0.145 3.855 13 C -0.131 4.131 14 C -0.143 4.143 15 C 0.511 3.489 16 F -0.177 7.177 17 F -0.177 7.177 18 F -0.173 7.173 19 C -0.151 4.151 20 C 0.101 3.899 21 N -0.438 5.438 22 H 0.264 0.736 23 H 0.340 0.660 24 H 0.305 0.695 25 H 0.143 0.857 26 H 0.139 0.861 27 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.664 -9.484 -1.397 16.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.119 4.119 3 Si 0.692 3.308 4 H -0.224 1.224 5 H -0.230 1.230 6 H -0.115 1.115 7 C -0.551 4.551 8 H 0.091 0.909 9 C 0.121 3.879 10 H 0.071 0.929 11 N -0.354 5.354 12 C 0.005 3.995 13 C -0.152 4.152 14 C -0.152 4.152 15 C 0.457 3.543 16 F -0.158 7.158 17 F -0.158 7.158 18 F -0.155 7.155 19 C -0.171 4.171 20 C -0.056 4.056 21 N -0.146 5.146 22 H 0.073 0.927 23 H 0.154 0.846 24 H 0.116 0.884 25 H 0.161 0.839 26 H 0.157 0.843 27 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 12.545 -8.449 -1.016 15.159 hybrid contribution 1.380 -0.671 -0.799 1.730 sum 13.925 -9.120 -1.816 16.744 Atomic orbital electron populations 1.69949 1.06929 1.27377 1.49139 1.24960 0.94550 0.99982 0.92448 0.87222 0.84609 0.81155 0.77820 1.22377 1.22991 1.11458 1.20622 0.86598 0.94795 1.53128 0.90897 1.18696 0.97376 0.80742 0.91106 0.92853 1.60145 1.12454 1.56854 1.05991 1.23134 0.88990 0.99543 0.87796 1.21995 0.98188 0.94414 1.00595 1.20323 1.00651 0.96933 0.97303 1.18255 0.79683 0.75131 0.81244 1.93217 1.38073 1.94643 1.89884 1.93184 1.94793 1.32654 1.95193 1.93209 1.94502 1.78623 1.49124 1.21820 0.99703 1.00418 0.95208 1.22932 0.93036 0.92766 0.96913 1.67686 1.19812 1.02812 1.24300 0.92719 0.84593 0.88377 0.83914 0.84312 0.82176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.96 55.43 0.77 -26.72 15 2 C 0.08 2.42 5.47 -17.82 -0.10 2.32 15 3 Si 0.87 21.05 26.94 -169.99 -4.58 16.47 15 4 H -0.30 -7.28 7.11 56.52 0.40 -6.88 15 5 H -0.30 -7.64 7.11 56.52 0.40 -7.24 15 6 H -0.19 -4.29 5.17 56.52 0.29 -4.00 15 7 C -0.51 -14.04 9.11 -34.44 -0.31 -14.35 15 8 H 0.07 2.24 7.93 -52.49 -0.42 1.82 15 9 C 0.23 5.06 2.43 -70.01 -0.17 4.89 15 10 H 0.05 1.15 7.29 -51.93 -0.38 0.77 15 11 N -0.83 -16.50 5.83 -6.65 -0.04 -16.54 15 12 C 0.15 2.81 5.67 -82.59 -0.47 2.34 15 13 C -0.13 -2.16 9.09 -39.44 -0.36 -2.52 15 14 C -0.14 -2.08 5.48 -104.32 -0.57 -2.65 15 15 C 0.51 6.76 3.39 36.01 0.12 6.88 15 16 F -0.18 -2.29 17.30 2.25 0.04 -2.25 15 17 F -0.18 -2.24 16.56 2.25 0.04 -2.21 15 18 F -0.17 -2.40 16.55 2.25 0.04 -2.36 15 19 C -0.15 -2.01 9.49 -39.44 -0.37 -2.39 15 20 C 0.10 1.50 11.18 -17.55 -0.20 1.30 15 21 N -0.44 -8.29 9.90 -9.47 -0.09 -8.38 15 22 H 0.26 7.63 8.31 -40.82 -0.34 7.29 15 23 H 0.34 6.87 8.92 -39.29 -0.35 6.52 15 24 H 0.31 5.17 9.06 -39.29 -0.36 4.82 15 25 H 0.14 2.14 7.59 -52.48 -0.40 1.74 15 26 H 0.14 1.43 7.69 -52.49 -0.40 1.02 15 27 H 0.16 1.83 8.06 -52.49 -0.42 1.40 15 LS Contribution 252.58 15.07 3.81 3.81 Total: -1.00 -30.67 252.58 -4.42 -35.09 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -1.97 Total: 7.27 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -2.43 Total: -4.17 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 0.64 Total: -51.64 kcal Atomic # 9 Polarization: -6.93 SS G_CDS: 0.11 Total: -6.82 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.58 Total: 16.47 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.67 -4.42 -35.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095714957.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.387 kcal (2) G-P(sol) polarization free energy of solvation -30.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds