Wall clock time and date at job start Mon Mar 30 2020 06:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 11 11 N 1.46904 * 109.46860 * 60.28074 * 9 7 2 12 12 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 13 13 C 1.38225 * 119.61708 * 125.00267 * 12 9 7 14 14 C 1.38627 * 119.16101 * 179.97438 * 13 12 9 15 15 C 1.50702 * 120.78998 * 179.97438 * 14 13 12 16 16 F 1.39899 * 109.47170 * 89.99758 * 15 14 13 17 17 F 1.39903 * 109.46936 * 210.00118 * 15 14 13 18 18 F 1.39896 * 109.46919 * 330.00031 * 15 14 13 19 19 C 1.38672 * 118.41991 * 359.97438 * 14 13 12 20 20 C 1.38183 * 119.16570 * 0.02562 * 19 14 13 21 21 N 1.31849 * 119.61654 * 304.72989 * 12 9 7 22 22 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 23 23 H 1.00906 * 110.99862 * 60.00007 * 11 9 7 24 24 H 1.00899 * 111.00096 * 183.94896 * 11 9 7 25 25 H 1.08004 * 120.42038 * 359.95752 * 13 12 9 26 26 H 1.08002 * 120.41914 * 179.97438 * 19 14 13 27 27 H 1.08000 * 119.61704 * 179.97438 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 1 3.8713 -0.6783 -0.8962 11 7 4.0062 -0.5038 1.1930 12 6 4.0139 -2.6148 -0.0107 13 6 4.8874 -3.0271 -0.9995 14 6 5.3440 -4.3360 -0.9947 15 6 6.2964 -4.8247 -2.0554 16 9 7.6133 -4.6166 -1.6314 17 9 6.0878 -6.1904 -2.2760 18 9 6.0723 -4.1208 -3.2434 19 6 4.9034 -5.1850 0.0094 20 6 4.0297 -4.7017 0.9647 21 7 3.6195 -3.4486 0.9313 22 1 -0.4850 0.8400 -0.0004 23 1 3.6862 -0.9631 2.0325 24 1 5.0127 -0.4338 1.1805 25 1 5.2098 -2.3383 -1.7664 26 1 5.2383 -6.2112 0.0439 27 1 3.6816 -5.3567 1.7497 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095714957.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:57 Heat of formation + Delta-G solvation = -129.759040 kcal Electronic energy + Delta-G solvation = -17593.966049 eV Core-core repulsion = 14129.136477 eV Total energy + Delta-G solvation = -3464.829572 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.28196 -48.78931 -48.74637 -41.39328 -36.76556 -34.32096 -33.89221 -31.72448 -28.38633 -27.78903 -24.98453 -24.15482 -22.02187 -19.64385 -19.61434 -19.23875 -18.88360 -17.28661 -16.95220 -16.52930 -16.24266 -15.79157 -15.63546 -15.54804 -15.20097 -15.08090 -14.93240 -14.89070 -14.73417 -14.29482 -13.65398 -13.40839 -13.09220 -12.74773 -12.31975 -11.90193 -11.40783 -11.22001 -10.72251 -10.51784 -10.08558 -8.93764 -8.19592 -6.32414 -0.19829 0.03053 1.46551 1.54975 1.62526 1.98028 2.52246 2.58338 2.65142 2.86496 3.18446 3.29344 3.41219 3.80115 3.84733 4.02269 4.21927 4.41865 4.57837 4.69713 4.83097 5.09372 5.48670 5.56507 6.17235 6.44086 6.79656 6.94528 7.09160 7.43504 8.94150 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.034630 B = 0.006514 C = 0.006175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.348397 B = 4297.275575 C = 4533.637171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.297 1.297 5 H -0.317 1.317 6 H -0.155 1.155 7 C -0.507 4.507 8 H 0.023 0.977 9 C 0.236 3.764 10 H 0.061 0.939 11 N -0.827 5.827 12 C 0.116 3.884 13 C -0.134 4.134 14 C -0.146 4.146 15 C 0.521 3.479 16 F -0.173 7.173 17 F -0.171 7.171 18 F -0.177 7.177 19 C -0.129 4.129 20 C 0.096 3.904 21 N -0.475 5.475 22 H 0.262 0.738 23 H 0.339 0.661 24 H 0.329 0.671 25 H 0.154 0.846 26 H 0.177 0.823 27 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.366 -10.386 -1.326 19.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.175 4.175 3 Si 0.756 3.244 4 H -0.225 1.225 5 H -0.246 1.246 6 H -0.075 1.075 7 C -0.546 4.546 8 H 0.042 0.958 9 C 0.125 3.875 10 H 0.078 0.922 11 N -0.356 5.356 12 C -0.023 4.023 13 C -0.155 4.155 14 C -0.156 4.156 15 C 0.467 3.533 16 F -0.154 7.154 17 F -0.152 7.152 18 F -0.158 7.158 19 C -0.149 4.149 20 C -0.062 4.062 21 N -0.184 5.184 22 H 0.070 0.930 23 H 0.153 0.847 24 H 0.142 0.858 25 H 0.171 0.829 26 H 0.195 0.805 27 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 15.287 -9.367 -0.954 17.954 hybrid contribution 0.556 -0.616 -0.810 1.159 sum 15.843 -9.984 -1.763 18.809 Atomic orbital electron populations 1.70112 1.09010 1.28043 1.52201 1.25926 0.95165 1.04017 0.92432 0.86288 0.84515 0.75839 0.77780 1.22470 1.24566 1.07522 1.20836 0.89826 0.92542 1.51371 0.95815 1.18363 0.93787 0.83450 0.91912 0.92161 1.59805 1.14257 1.56461 1.05114 1.22610 0.91261 0.98639 0.89777 1.21979 0.97832 0.95676 1.00000 1.20489 1.00691 0.96410 0.97968 1.17970 0.79456 0.75245 0.80654 1.93232 1.37689 1.94647 1.89820 1.93202 1.94768 1.32092 1.95114 1.93209 1.94535 1.78791 1.49300 1.22243 0.97560 1.01768 0.93356 1.23492 0.92915 0.91694 0.98097 1.67558 1.21014 1.04697 1.25085 0.92999 0.84717 0.85774 0.82866 0.80525 0.78996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.86 13.96 21.45 0.30 -60.56 15 2 C 0.02 1.32 5.47 84.65 0.46 1.78 15 3 Si 0.93 43.84 26.94 68.60 1.85 45.69 15 4 H -0.30 -13.93 7.11 99.48 0.71 -13.22 15 5 H -0.32 -15.62 7.11 99.48 0.71 -14.91 15 6 H -0.15 -6.32 5.17 99.48 0.51 -5.80 15 7 C -0.51 -28.47 9.11 25.60 0.23 -28.24 15 8 H 0.02 1.52 7.93 -2.91 -0.02 1.50 15 9 C 0.24 10.16 2.43 43.42 0.11 10.27 15 10 H 0.06 2.52 7.29 -2.39 -0.02 2.50 15 11 N -0.83 -31.49 5.83 -174.94 -1.02 -32.51 15 12 C 0.12 4.39 5.67 42.55 0.24 4.63 15 13 C -0.13 -4.18 9.09 22.36 0.20 -3.98 15 14 C -0.15 -3.84 5.48 -19.67 -0.11 -3.94 15 15 C 0.52 12.15 3.39 71.24 0.24 12.40 15 16 F -0.17 -3.91 17.30 44.97 0.78 -3.14 15 17 F -0.17 -3.72 16.56 44.97 0.74 -2.98 15 18 F -0.18 -4.46 16.55 44.97 0.74 -3.71 15 19 C -0.13 -2.98 9.49 22.36 0.21 -2.77 15 20 C 0.10 2.59 11.18 84.67 0.95 3.54 15 21 N -0.47 -17.57 9.90 -183.88 -1.82 -19.39 15 22 H 0.26 15.81 8.31 -92.71 -0.77 15.04 15 23 H 0.34 13.32 8.92 -89.69 -0.80 12.52 15 24 H 0.33 10.21 9.06 -89.69 -0.81 9.39 15 25 H 0.15 4.30 7.59 -2.91 -0.02 4.28 15 26 H 0.18 2.72 7.69 -2.91 -0.02 2.70 15 27 H 0.19 3.76 8.06 -2.91 -0.02 3.74 15 Total: -1.00 -68.73 252.58 3.55 -65.18 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -0.56 Total: 17.73 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 2.54 Total: -6.31 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -2.54 Total: -112.46 kcal Atomic # 9 Polarization: -12.09 SS G_CDS: 2.27 Total: -9.83 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.85 Total: 45.69 kcal Total: -68.73 3.55 -65.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095714957.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.579 kcal (2) G-P(sol) polarization free energy of solvation -68.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds