Wall clock time and date at job start Mon Mar 30 2020 06:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1 10 10 H 1.09004 * 109.46762 * 299.99954 * 9 7 2 11 11 N 1.46895 * 109.46852 * 59.99683 * 9 7 2 12 12 C 1.50700 * 109.47064 * 179.97438 * 9 7 2 13 13 C 1.38230 * 119.61573 * 125.00267 * 12 9 7 14 14 C 1.38625 * 119.16123 * 179.97438 * 13 12 9 15 15 C 1.38681 * 118.41934 * 0.02562 * 14 13 12 16 16 C 1.38183 * 119.16233 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.61774 * 180.02562 * 16 15 14 18 18 F 1.39905 * 109.47083 * 89.99497 * 17 16 15 19 19 F 1.39898 * 109.47170 * 210.00198 * 17 16 15 20 20 F 1.39903 * 109.46827 * 329.99890 * 17 16 15 21 21 N 1.31854 * 119.62004 * 304.72210 * 12 9 7 22 22 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 23 23 H 1.00897 * 111.00212 * 296.04629 * 11 9 7 24 24 H 1.00907 * 111.00270 * 60.00588 * 11 9 7 25 25 H 1.08000 * 120.41815 * 359.97438 * 13 12 9 26 26 H 1.07994 * 120.79480 * 180.02562 * 14 13 12 27 27 H 1.07995 * 120.41452 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 6 3.5117 -1.1939 0.0050 10 1 3.8746 -0.6844 -0.8877 11 7 4.0017 -0.4955 1.2008 12 6 4.0140 -2.6147 0.0124 13 6 4.8912 -3.0343 -0.9700 14 6 5.3477 -4.3431 -0.9539 15 6 4.9025 -5.1850 0.0542 16 6 4.0252 -4.6947 1.0025 17 6 3.5352 -5.6005 2.1028 18 9 4.4026 -5.5161 3.1972 19 9 2.2510 -5.2066 2.4939 20 9 3.4972 -6.9197 1.6385 21 7 3.6160 -3.4417 0.9592 22 1 -0.4850 0.8400 0.0004 23 1 3.7323 0.4768 1.1876 24 1 3.6786 -0.9489 2.0423 25 1 5.2168 -2.3510 -1.7405 26 1 6.0338 -4.6987 -1.7083 27 1 5.2372 -6.2109 0.0973 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095715021.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:05 Heat of formation + Delta-G solvation = -109.332782 kcal Electronic energy + Delta-G solvation = -17786.976954 eV Core-core repulsion = 14323.033131 eV Total energy + Delta-G solvation = -3463.943823 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.90829 -47.48574 -47.30164 -40.04915 -35.23421 -32.45480 -32.11165 -30.84737 -26.72630 -26.03200 -23.86678 -22.31427 -20.68918 -18.32596 -18.27187 -17.99273 -17.02198 -16.03720 -15.63957 -15.58395 -14.36103 -14.33673 -14.14499 -13.97453 -13.83636 -13.51618 -13.48658 -13.48141 -13.00111 -12.54212 -12.37078 -12.03137 -11.58260 -10.94089 -10.85181 -10.35578 -9.75475 -9.61880 -9.17216 -8.89240 -8.79193 -7.62547 -6.23903 -4.27474 1.06894 1.48456 2.74526 3.12034 3.22115 3.25612 3.79369 3.85550 4.19516 4.20783 4.66945 4.89403 4.94765 5.08021 5.22290 5.25969 5.52680 5.80557 5.98798 6.10106 6.26131 6.66374 6.94012 7.36251 7.96137 8.21248 8.23629 8.44564 8.85839 9.32638 10.88821 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.030144 B = 0.007510 C = 0.006765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.658421 B = 3727.614391 C = 4137.952213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.074 3.926 3 Si 0.872 3.128 4 H -0.274 1.274 5 H -0.260 1.260 6 H -0.290 1.290 7 C -0.540 4.540 8 H 0.080 0.920 9 C 0.219 3.781 10 H 0.060 0.940 11 N -0.847 5.847 12 C 0.195 3.805 13 C -0.142 4.142 14 C -0.078 4.078 15 C -0.149 4.149 16 C 0.034 3.966 17 C 0.522 3.478 18 F -0.176 7.176 19 F -0.161 7.161 20 F -0.178 7.178 21 N -0.423 5.423 22 H 0.267 0.733 23 H 0.320 0.680 24 H 0.341 0.659 25 H 0.142 0.858 26 H 0.140 0.860 27 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.569 -8.908 -0.201 13.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.130 4.130 3 Si 0.701 3.299 4 H -0.200 1.200 5 H -0.184 1.184 6 H -0.217 1.217 7 C -0.580 4.580 8 H 0.098 0.902 9 C 0.109 3.891 10 H 0.077 0.923 11 N -0.382 5.382 12 C 0.056 3.944 13 C -0.163 4.163 14 C -0.104 4.104 15 C -0.169 4.169 16 C -0.106 4.106 17 C 0.467 3.533 18 F -0.157 7.157 19 F -0.142 7.142 20 F -0.160 7.160 21 N -0.131 5.131 22 H 0.077 0.923 23 H 0.136 0.864 24 H 0.153 0.847 25 H 0.159 0.841 26 H 0.158 0.842 27 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.535 -8.686 0.195 13.656 hybrid contribution -0.297 0.574 -0.257 0.695 sum 10.238 -8.113 -0.062 13.063 Atomic orbital electron populations 1.69886 1.06170 1.27182 1.49082 1.25003 0.94884 0.98892 0.94259 0.87034 0.80221 0.83975 0.78699 1.20019 1.18434 1.21665 1.21537 0.88999 0.95311 1.52186 0.90186 1.18523 0.94598 0.84483 0.91480 0.92276 1.59649 1.66757 1.05639 1.06110 1.21552 0.88995 0.96279 0.87583 1.22271 0.97335 0.96584 1.00110 1.21477 0.98363 0.93250 0.97296 1.21638 0.98402 1.01359 0.95544 1.20879 0.99719 0.93712 0.96245 1.17981 0.75968 0.78151 0.81204 1.93205 1.69939 1.96118 1.56483 1.93260 1.38876 1.90493 1.91577 1.93166 1.96339 1.37764 1.88710 1.67062 1.20489 1.00992 1.24563 0.92305 0.86368 0.84650 0.84057 0.84185 0.84365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.96 55.43 0.77 -25.70 15 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 15 3 Si 0.87 20.32 24.60 -169.99 -4.18 16.14 15 4 H -0.27 -6.19 7.01 56.52 0.40 -5.79 15 5 H -0.26 -5.72 6.55 56.52 0.37 -5.35 15 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 7 C -0.54 -14.83 9.11 -34.44 -0.31 -15.14 15 8 H 0.08 2.47 7.93 -52.49 -0.42 2.06 15 9 C 0.22 5.02 2.56 -70.02 -0.18 4.84 15 10 H 0.06 1.32 6.94 -51.93 -0.36 0.96 15 11 N -0.85 -18.62 9.13 -6.65 -0.06 -18.68 15 12 C 0.19 4.00 5.68 -82.59 -0.47 3.53 15 13 C -0.14 -2.30 9.71 -39.44 -0.38 -2.68 15 14 C -0.08 -1.03 10.18 -39.27 -0.40 -1.43 15 15 C -0.15 -2.11 9.44 -39.44 -0.37 -2.48 15 16 C 0.03 0.61 6.29 -82.59 -0.52 0.09 15 17 C 0.52 8.65 3.43 36.01 0.12 8.77 15 18 F -0.18 -2.82 17.30 2.25 0.04 -2.78 15 19 F -0.16 -3.04 17.04 2.25 0.04 -3.00 15 20 F -0.18 -2.59 16.44 2.25 0.04 -2.55 15 21 N -0.42 -8.89 9.51 -5.74 -0.05 -8.94 15 22 H 0.27 7.45 8.31 -40.82 -0.34 7.11 15 23 H 0.32 7.05 4.27 -39.29 -0.17 6.88 15 24 H 0.34 7.60 8.92 -39.29 -0.35 7.25 15 25 H 0.14 1.92 7.95 -52.49 -0.42 1.51 15 26 H 0.14 1.28 8.06 -52.49 -0.42 0.85 15 27 H 0.14 1.52 7.60 -52.49 -0.40 1.12 15 LS Contribution 250.50 15.07 3.77 3.77 Total: -1.00 -30.16 250.50 -3.95 -34.11 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -1.71 Total: 10.18 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -2.61 Total: -2.55 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.66 Total: -53.33 kcal Atomic # 9 Polarization: -8.45 SS G_CDS: 0.11 Total: -8.33 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.18 Total: 16.14 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.16 -3.95 -34.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095715021.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.219 kcal (2) G-P(sol) polarization free energy of solvation -30.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds