Wall clock time and date at job start Mon Mar 30 2020 06:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1 10 10 H 1.09004 * 109.46762 * 299.99954 * 9 7 2 11 11 N 1.46895 * 109.46852 * 59.99683 * 9 7 2 12 12 C 1.50700 * 109.47064 * 179.97438 * 9 7 2 13 13 C 1.38230 * 119.61573 * 125.00267 * 12 9 7 14 14 C 1.38625 * 119.16123 * 179.97438 * 13 12 9 15 15 C 1.38681 * 118.41934 * 0.02562 * 14 13 12 16 16 C 1.38183 * 119.16233 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.61774 * 180.02562 * 16 15 14 18 18 F 1.39905 * 109.47083 * 89.99497 * 17 16 15 19 19 F 1.39898 * 109.47170 * 210.00198 * 17 16 15 20 20 F 1.39903 * 109.46827 * 329.99890 * 17 16 15 21 21 N 1.31854 * 119.62004 * 304.72210 * 12 9 7 22 22 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 23 23 H 1.00897 * 111.00212 * 296.04629 * 11 9 7 24 24 H 1.00907 * 111.00270 * 60.00588 * 11 9 7 25 25 H 1.08000 * 120.41815 * 359.97438 * 13 12 9 26 26 H 1.07994 * 120.79480 * 180.02562 * 14 13 12 27 27 H 1.07995 * 120.41452 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 6 3.5117 -1.1939 0.0050 10 1 3.8746 -0.6844 -0.8877 11 7 4.0017 -0.4955 1.2008 12 6 4.0140 -2.6147 0.0124 13 6 4.8912 -3.0343 -0.9700 14 6 5.3477 -4.3431 -0.9539 15 6 4.9025 -5.1850 0.0542 16 6 4.0252 -4.6947 1.0025 17 6 3.5352 -5.6005 2.1028 18 9 4.4026 -5.5161 3.1972 19 9 2.2510 -5.2066 2.4939 20 9 3.4972 -6.9197 1.6385 21 7 3.6160 -3.4417 0.9592 22 1 -0.4850 0.8400 0.0004 23 1 3.7323 0.4768 1.1876 24 1 3.6786 -0.9489 2.0423 25 1 5.2168 -2.3510 -1.7405 26 1 6.0338 -4.6987 -1.7083 27 1 5.2372 -6.2109 0.0973 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095715021.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:05 Heat of formation + Delta-G solvation = -132.336763 kcal Electronic energy + Delta-G solvation = -17787.974481 eV Core-core repulsion = 14323.033131 eV Total energy + Delta-G solvation = -3464.941351 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -51.21378 -48.73999 -48.68235 -41.35782 -36.97696 -34.07879 -33.68360 -32.34709 -28.42970 -27.55729 -25.44122 -23.59150 -22.27218 -19.68086 -19.59183 -19.34604 -18.96147 -17.44225 -17.19290 -16.94843 -16.10092 -15.66371 -15.55239 -15.47560 -15.13126 -14.86976 -14.84959 -14.84005 -14.66238 -14.11643 -13.70512 -13.57405 -13.21933 -12.79100 -12.56514 -12.07468 -11.65057 -10.93427 -10.91608 -10.50508 -10.22469 -9.45455 -8.37614 -6.46508 -0.18125 0.28872 1.27683 1.33117 1.43354 1.45544 2.22591 2.49084 2.54897 2.92436 2.96520 3.37374 3.57831 3.87320 4.01932 4.09667 4.16228 4.38526 4.62147 4.83510 5.03207 5.19470 5.40391 5.59232 6.01412 6.32063 6.50279 6.65214 6.91466 7.18052 8.79445 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.030144 B = 0.007510 C = 0.006765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.658421 B = 3727.614391 C = 4137.952213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.012 3.988 3 Si 0.943 3.057 4 H -0.261 1.261 5 H -0.233 1.233 6 H -0.292 1.292 7 C -0.542 4.542 8 H 0.025 0.975 9 C 0.222 3.778 10 H 0.072 0.928 11 N -0.834 5.834 12 C 0.153 3.847 13 C -0.140 4.140 14 C -0.059 4.059 15 C -0.132 4.132 16 C 0.007 3.993 17 C 0.525 3.475 18 F -0.174 7.174 19 F -0.182 7.182 20 F -0.164 7.164 21 N -0.469 5.469 22 H 0.268 0.732 23 H 0.319 0.681 24 H 0.337 0.663 25 H 0.168 0.832 26 H 0.196 0.804 27 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.712 -9.289 -1.409 16.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.186 4.186 3 Si 0.768 3.232 4 H -0.187 1.187 5 H -0.156 1.156 6 H -0.219 1.219 7 C -0.582 4.582 8 H 0.044 0.956 9 C 0.112 3.888 10 H 0.089 0.911 11 N -0.367 5.367 12 C 0.014 3.986 13 C -0.160 4.160 14 C -0.084 4.084 15 C -0.152 4.152 16 C -0.132 4.132 17 C 0.470 3.530 18 F -0.155 7.155 19 F -0.164 7.164 20 F -0.145 7.145 21 N -0.178 5.178 22 H 0.077 0.923 23 H 0.135 0.865 24 H 0.148 0.852 25 H 0.186 0.814 26 H 0.213 0.787 27 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 13.706 -9.090 -1.008 16.477 hybrid contribution -1.280 0.506 0.117 1.381 sum 12.426 -8.584 -0.890 15.129 Atomic orbital electron populations 1.70067 1.08421 1.28342 1.51290 1.25970 0.95657 1.03286 0.93735 0.85884 0.79590 0.78212 0.79561 1.18686 1.15610 1.21873 1.21751 0.91861 0.93202 1.51422 0.95639 1.18416 0.91334 0.87141 0.91938 0.91078 1.59643 1.65967 1.05438 1.05673 1.21335 0.91966 0.95274 0.90001 1.22560 0.95891 0.98561 0.99036 1.22075 0.97510 0.91453 0.97350 1.22145 0.95996 1.03165 0.93913 1.21136 1.01342 0.93010 0.97753 1.17974 0.75125 0.78680 0.81241 1.93203 1.69672 1.96174 1.56468 1.93213 1.40485 1.90843 1.91823 1.93185 1.96229 1.36611 1.88502 1.66809 1.22106 1.02810 1.26068 0.92275 0.86472 0.85168 0.81446 0.78704 0.80558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.63 13.96 21.45 0.30 -58.34 15 2 C 0.01 0.70 5.47 84.65 0.46 1.16 15 3 Si 0.94 41.92 24.60 68.60 1.69 43.61 15 4 H -0.26 -11.02 7.01 99.48 0.70 -10.32 15 5 H -0.23 -9.27 6.55 99.48 0.65 -8.62 15 6 H -0.29 -12.99 7.11 99.48 0.71 -12.29 15 7 C -0.54 -30.83 9.11 25.60 0.23 -30.60 15 8 H 0.03 1.67 7.93 -2.91 -0.02 1.65 15 9 C 0.22 10.10 2.56 43.43 0.11 10.21 15 10 H 0.07 3.04 6.94 -2.39 -0.02 3.02 15 11 N -0.83 -35.94 9.13 -174.95 -1.60 -37.53 15 12 C 0.15 6.18 5.68 42.55 0.24 6.42 15 13 C -0.14 -4.08 9.71 22.36 0.22 -3.86 15 14 C -0.06 -1.26 10.18 22.47 0.23 -1.03 15 15 C -0.13 -3.24 9.44 22.36 0.21 -3.03 15 16 C 0.01 0.23 6.29 42.54 0.27 0.50 15 17 C 0.53 17.16 3.43 71.24 0.24 17.40 15 18 F -0.17 -5.45 17.30 44.97 0.78 -4.67 15 19 F -0.18 -7.13 17.04 44.97 0.77 -6.37 15 20 F -0.16 -4.49 16.44 44.97 0.74 -3.75 15 21 N -0.47 -19.92 9.51 -172.08 -1.64 -21.56 15 22 H 0.27 15.55 8.31 -92.71 -0.77 14.78 15 23 H 0.32 13.49 4.27 -89.70 -0.38 13.11 15 24 H 0.34 15.13 8.92 -89.69 -0.80 14.33 15 25 H 0.17 3.85 7.95 -2.91 -0.02 3.83 15 26 H 0.20 2.09 8.06 -2.91 -0.02 2.06 15 27 H 0.18 2.93 7.60 -2.91 -0.02 2.91 15 Total: -1.00 -70.21 250.50 3.25 -66.96 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: -0.01 Total: 24.46 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 2.22 Total: -2.82 kcal Atomic # 7 Polarization: -114.49 SS G_CDS: -2.93 Total: -117.42 kcal Atomic # 9 Polarization: -17.08 SS G_CDS: 2.28 Total: -14.79 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.69 Total: 43.61 kcal Total: -70.21 3.25 -66.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095715021.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.374 kcal (2) G-P(sol) polarization free energy of solvation -70.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds