Wall clock time and date at job start Mon Mar 30 2020 06:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 N 1.46899 * 109.47429 * 59.99659 * 9 7 2 12 12 C 1.50699 * 109.46824 * 180.02562 * 9 7 2 13 13 C 1.38231 * 120.41901 * 279.99415 * 12 9 7 14 14 N 1.31850 * 120.76937 * 180.02562 * 13 12 9 15 15 C 1.31888 * 121.72397 * 359.97438 * 14 13 12 16 16 C 1.38187 * 120.76443 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.41891 * 180.02562 * 16 15 14 18 18 F 1.39905 * 109.47087 * 0.02562 * 17 16 15 19 19 F 1.39903 * 109.47038 * 119.99859 * 17 16 15 20 20 F 1.39901 * 109.47169 * 240.00124 * 17 16 15 21 21 C 1.38630 * 120.42430 * 99.72146 * 12 9 7 22 22 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 23 23 H 1.00896 * 110.99761 * 60.00489 * 11 9 7 24 24 H 1.00898 * 110.99366 * 183.95380 * 11 9 7 25 25 H 1.08002 * 119.61310 * 0.02562 * 13 12 9 26 26 H 1.07993 * 119.61876 * 179.97438 * 15 14 13 27 27 H 1.08003 * 120.78838 * 359.97438 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6241 -2.5574 0.8881 11 7 0.4068 -2.5762 -1.2014 12 6 2.2303 -3.6446 -0.0015 13 6 2.8433 -4.0416 -1.1751 14 7 3.7007 -5.0431 -1.1829 15 6 4.0076 -5.7020 -0.0824 16 6 3.4353 -5.3611 1.1284 17 6 3.7920 -6.1188 2.3812 18 9 4.7195 -7.1197 2.0727 19 9 4.3493 -5.2392 3.3155 20 9 2.6387 -6.7006 2.9185 21 6 2.5322 -4.3099 1.1767 22 1 -0.4850 -0.8401 -0.0004 23 1 0.9651 -2.5243 -2.0403 24 1 -0.1571 -3.4128 -1.1936 25 1 2.6171 -3.5253 -2.0964 26 1 4.7142 -6.5174 -0.1279 27 1 2.0723 -4.0186 2.1095 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095715203.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:08 Heat of formation + Delta-G solvation = -122.469462 kcal Electronic energy + Delta-G solvation = -17608.154454 eV Core-core repulsion = 14143.640982 eV Total energy + Delta-G solvation = -3464.513472 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.15368 -47.69063 -47.59525 -40.14376 -35.52717 -32.88603 -31.94708 -30.06874 -26.39335 -25.78443 -23.41562 -22.92675 -20.81779 -18.47703 -18.46456 -18.05741 -16.97316 -16.73739 -16.01842 -14.72856 -14.53192 -14.44840 -14.14417 -14.06582 -13.81497 -13.78199 -13.68736 -13.65996 -12.97856 -12.83559 -12.41552 -12.19348 -11.37270 -10.82327 -10.68932 -10.13161 -9.87246 -9.45713 -9.29289 -8.50836 -8.36910 -7.74665 -6.33495 -4.19410 0.93316 1.42989 2.66139 3.42188 3.42367 3.61417 3.71435 3.77713 4.03148 4.44854 4.50745 4.56304 4.90720 5.13446 5.26514 5.29499 5.55214 5.80875 5.92754 6.06181 6.31650 6.75515 6.92484 7.73194 7.98220 8.07036 8.44507 8.53499 8.88132 9.64712 11.06720 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.030350 B = 0.006478 C = 0.006123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.342402 B = 4321.590539 C = 4571.881836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.042 3.958 3 Si 1.065 2.935 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.616 4.616 8 H 0.048 0.952 9 C 0.242 3.758 10 H 0.045 0.955 11 N -0.828 5.828 12 C -0.115 4.115 13 C 0.123 3.877 14 N -0.481 5.481 15 C 0.120 3.880 16 C -0.241 4.241 17 C 0.517 3.483 18 F -0.179 7.179 19 F -0.175 7.175 20 F -0.178 7.178 21 C -0.030 4.030 22 H 0.290 0.710 23 H 0.328 0.672 24 H 0.305 0.695 25 H 0.161 0.839 26 H 0.161 0.839 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.725 -11.151 2.248 12.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.169 4.169 3 Si 0.893 3.107 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.654 4.654 8 H 0.066 0.934 9 C 0.133 3.867 10 H 0.062 0.938 11 N -0.355 5.355 12 C -0.119 4.119 13 C -0.034 4.034 14 N -0.189 5.189 15 C -0.038 4.038 16 C -0.245 4.245 17 C 0.462 3.538 18 F -0.161 7.161 19 F -0.157 7.157 20 F -0.159 7.159 21 C -0.056 4.056 22 H 0.103 0.897 23 H 0.141 0.859 24 H 0.116 0.884 25 H 0.178 0.822 26 H 0.178 0.822 27 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.545 -9.082 1.738 10.782 hybrid contribution 0.562 -2.462 0.860 2.668 sum 6.108 -11.543 2.598 13.316 Atomic orbital electron populations 1.70573 1.06833 1.32866 1.41405 1.25655 0.96522 1.01888 0.92798 0.83623 0.74961 0.75604 0.76511 1.20745 1.21572 1.21472 1.21633 0.93406 0.90117 1.60241 0.93411 1.18395 0.87724 0.89792 0.90827 0.93765 1.59424 1.28384 1.42591 1.05146 1.22621 0.99308 0.97564 0.92450 1.22855 0.90367 0.91407 0.98722 1.67821 1.14262 1.07558 1.29236 1.22471 0.96768 0.97965 0.86617 1.20993 1.06481 1.02688 0.94295 1.18153 0.74373 0.77229 0.84056 1.93146 1.67058 1.62881 1.92970 1.93226 1.85667 1.68797 1.67989 1.93209 1.49819 1.85227 1.87662 1.21303 0.93296 0.91141 0.99903 0.89709 0.85852 0.88410 0.82232 0.82193 0.84167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.29 13.51 55.43 0.75 -24.54 15 2 C 0.04 1.14 5.39 -17.82 -0.10 1.04 15 3 Si 1.06 24.18 29.90 -169.99 -5.08 19.09 15 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 5 H -0.29 -6.35 7.11 56.52 0.40 -5.95 15 6 H -0.29 -6.32 7.11 56.52 0.40 -5.92 15 7 C -0.62 -15.97 8.71 -34.44 -0.30 -16.27 15 8 H 0.05 1.27 7.74 -52.49 -0.41 0.86 15 9 C 0.24 5.42 2.48 -70.01 -0.17 5.25 15 10 H 0.04 1.07 7.90 -51.93 -0.41 0.66 15 11 N -0.83 -17.11 7.63 -6.65 -0.05 -17.16 15 12 C -0.12 -2.21 4.89 -104.48 -0.51 -2.72 15 13 C 0.12 2.20 10.46 -17.55 -0.18 2.01 15 14 N -0.48 -8.21 10.36 -13.25 -0.14 -8.35 15 15 C 0.12 1.84 10.59 -17.55 -0.19 1.65 15 16 C -0.24 -3.77 5.38 -104.48 -0.56 -4.33 15 17 C 0.52 7.29 3.33 36.00 0.12 7.41 15 18 F -0.18 -2.32 16.00 2.25 0.04 -2.29 15 19 F -0.18 -2.60 17.24 2.25 0.04 -2.57 15 20 F -0.18 -2.52 17.25 2.25 0.04 -2.48 15 21 C -0.03 -0.53 9.42 -39.28 -0.37 -0.90 15 22 H 0.29 8.24 6.39 -40.82 -0.26 7.98 15 23 H 0.33 6.43 7.37 -39.29 -0.29 6.14 15 24 H 0.31 5.50 9.06 -39.29 -0.36 5.14 15 25 H 0.16 2.69 6.68 -52.49 -0.35 2.34 15 26 H 0.16 2.00 7.17 -52.49 -0.38 1.62 15 27 H 0.14 2.34 8.06 -52.48 -0.42 1.91 15 LS Contribution 254.25 15.07 3.83 3.83 Total: -1.00 -28.07 254.25 -4.51 -32.57 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -1.67 Total: 8.73 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -2.26 Total: -6.85 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.56 Total: -50.05 kcal Atomic # 9 Polarization: -7.44 SS G_CDS: 0.11 Total: -7.33 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -5.08 Total: 19.09 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -28.07 -4.51 -32.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095715203.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.895 kcal (2) G-P(sol) polarization free energy of solvation -28.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds