Wall clock time and date at job start Mon Mar 30 2020 06:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 N 1.46899 * 109.47429 * 59.99659 * 9 7 2 12 12 C 1.50699 * 109.46824 * 180.02562 * 9 7 2 13 13 C 1.38231 * 120.41901 * 279.99415 * 12 9 7 14 14 N 1.31850 * 120.76937 * 180.02562 * 13 12 9 15 15 C 1.31888 * 121.72397 * 359.97438 * 14 13 12 16 16 C 1.38187 * 120.76443 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.41891 * 180.02562 * 16 15 14 18 18 F 1.39905 * 109.47087 * 0.02562 * 17 16 15 19 19 F 1.39903 * 109.47038 * 119.99859 * 17 16 15 20 20 F 1.39901 * 109.47169 * 240.00124 * 17 16 15 21 21 C 1.38630 * 120.42430 * 99.72146 * 12 9 7 22 22 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 23 23 H 1.00896 * 110.99761 * 60.00489 * 11 9 7 24 24 H 1.00898 * 110.99366 * 183.95380 * 11 9 7 25 25 H 1.08002 * 119.61310 * 0.02562 * 13 12 9 26 26 H 1.07993 * 119.61876 * 179.97438 * 15 14 13 27 27 H 1.08003 * 120.78838 * 359.97438 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6241 -2.5574 0.8881 11 7 0.4068 -2.5762 -1.2014 12 6 2.2303 -3.6446 -0.0015 13 6 2.8433 -4.0416 -1.1751 14 7 3.7007 -5.0431 -1.1829 15 6 4.0076 -5.7020 -0.0824 16 6 3.4353 -5.3611 1.1284 17 6 3.7920 -6.1188 2.3812 18 9 4.7195 -7.1197 2.0727 19 9 4.3493 -5.2392 3.3155 20 9 2.6387 -6.7006 2.9185 21 6 2.5322 -4.3099 1.1767 22 1 -0.4850 -0.8401 -0.0004 23 1 0.9651 -2.5243 -2.0403 24 1 -0.1571 -3.4128 -1.1936 25 1 2.6171 -3.5253 -2.0964 26 1 4.7142 -6.5174 -0.1279 27 1 2.0723 -4.0186 2.1095 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095715203.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:07 Heat of formation + Delta-G solvation = -140.804437 kcal Electronic energy + Delta-G solvation = -17608.949518 eV Core-core repulsion = 14143.640982 eV Total energy + Delta-G solvation = -3465.308536 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.28535 -48.79232 -48.74863 -41.51585 -37.23416 -34.21397 -33.80490 -31.61212 -27.90311 -27.37466 -24.98713 -24.36521 -22.36057 -19.62017 -19.61337 -19.45726 -18.72503 -18.06358 -17.45114 -16.39180 -15.92762 -15.68491 -15.52804 -15.39600 -15.18457 -15.06732 -14.94594 -14.89958 -14.31214 -14.25742 -14.10648 -13.78265 -12.94097 -12.60619 -12.49723 -11.91713 -11.30623 -10.97892 -10.79650 -10.50053 -10.06020 -9.40067 -8.41333 -6.29243 -0.39828 0.04963 1.48189 1.58505 1.63971 1.83199 2.41550 2.52861 2.64045 2.87015 3.25670 3.29261 3.32634 3.61029 3.77166 3.89253 4.12239 4.16988 4.50559 4.70202 4.82613 5.23692 5.36757 5.84173 6.15050 6.60006 6.64867 6.74961 6.97818 7.61486 8.96490 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.030350 B = 0.006478 C = 0.006123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.342402 B = 4321.590539 C = 4571.881836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.004 4.004 3 Si 1.106 2.894 4 H -0.287 1.287 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.621 4.621 8 H 0.037 0.963 9 C 0.249 3.751 10 H 0.019 0.981 11 N -0.835 5.835 12 C -0.136 4.136 13 C 0.124 3.876 14 N -0.488 5.488 15 C 0.130 3.870 16 C -0.238 4.238 17 C 0.527 3.473 18 F -0.168 7.168 19 F -0.179 7.179 20 F -0.177 7.177 21 C -0.034 4.034 22 H 0.281 0.719 23 H 0.334 0.666 24 H 0.322 0.678 25 H 0.165 0.835 26 H 0.195 0.805 27 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.119 -12.178 2.160 14.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.209 4.209 3 Si 0.930 3.070 4 H -0.213 1.213 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.659 4.659 8 H 0.056 0.944 9 C 0.138 3.862 10 H 0.037 0.963 11 N -0.364 5.364 12 C -0.140 4.140 13 C -0.032 4.032 14 N -0.195 5.195 15 C -0.028 4.028 16 C -0.242 4.242 17 C 0.472 3.528 18 F -0.149 7.149 19 F -0.160 7.160 20 F -0.158 7.158 21 C -0.060 4.060 22 H 0.093 0.907 23 H 0.148 0.852 24 H 0.134 0.866 25 H 0.182 0.818 26 H 0.211 0.789 27 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.949 -10.133 1.646 12.396 hybrid contribution 0.176 -2.278 0.907 2.458 sum 7.125 -12.410 2.553 14.536 Atomic orbital electron populations 1.70678 1.07706 1.32359 1.44178 1.26840 0.96619 1.05172 0.92221 0.83065 0.74173 0.72347 0.77420 1.21251 1.20358 1.20034 1.21918 0.93116 0.91875 1.58982 0.94431 1.18015 0.87917 0.89876 0.90377 0.96297 1.59165 1.28578 1.43849 1.04792 1.22245 1.00124 0.97808 0.93822 1.22886 0.90250 0.91626 0.98399 1.67905 1.14151 1.07488 1.29968 1.23049 0.96111 0.97775 0.85849 1.21074 1.05701 1.02067 0.95330 1.17841 0.74520 0.77183 0.83257 1.93173 1.66588 1.62280 1.92844 1.93226 1.85711 1.69063 1.68026 1.93218 1.49882 1.85142 1.87564 1.21376 0.93613 0.91585 0.99471 0.90749 0.85158 0.86635 0.81753 0.78864 0.84037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.07 13.51 21.45 0.29 -52.78 15 2 C 0.00 -0.20 5.39 84.66 0.46 0.26 15 3 Si 1.11 48.60 29.90 68.60 2.05 50.65 15 4 H -0.29 -12.74 7.11 99.48 0.71 -12.04 15 5 H -0.28 -11.58 7.11 99.48 0.71 -10.87 15 6 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 7 C -0.62 -32.38 8.71 25.60 0.22 -32.16 15 8 H 0.04 1.99 7.74 -2.91 -0.02 1.97 15 9 C 0.25 11.24 2.48 43.42 0.11 11.34 15 10 H 0.02 0.95 7.90 -2.39 -0.02 0.93 15 11 N -0.83 -34.64 7.63 -174.95 -1.33 -35.98 15 12 C -0.14 -5.13 4.89 -19.77 -0.10 -5.23 15 13 C 0.12 4.29 10.46 84.69 0.89 5.18 15 14 N -0.49 -15.51 10.36 -195.84 -2.03 -17.53 15 15 C 0.13 3.59 10.59 84.67 0.90 4.49 15 16 C -0.24 -6.91 5.38 -19.77 -0.11 -7.02 15 17 C 0.53 13.53 3.33 71.23 0.24 13.76 15 18 F -0.17 -3.78 16.00 44.97 0.72 -3.06 15 19 F -0.18 -4.93 17.24 44.97 0.78 -4.16 15 20 F -0.18 -4.61 17.25 44.97 0.78 -3.84 15 21 C -0.03 -1.16 9.42 22.47 0.21 -0.95 15 22 H 0.28 16.31 6.39 -92.71 -0.59 15.72 15 23 H 0.33 13.06 7.37 -89.70 -0.66 12.39 15 24 H 0.32 11.56 9.06 -89.70 -0.81 10.75 15 25 H 0.17 5.39 6.68 -2.91 -0.02 5.37 15 26 H 0.19 4.00 7.17 -2.91 -0.02 3.97 15 27 H 0.14 4.68 8.06 -2.91 -0.02 4.66 15 Total: -1.00 -58.83 254.25 4.01 -54.81 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -0.05 Total: 22.19 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: 2.82 Total: -10.31 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -3.07 Total: -106.29 kcal Atomic # 9 Polarization: -13.33 SS G_CDS: 2.27 Total: -11.06 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 2.05 Total: 50.65 kcal Total: -58.83 4.01 -54.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095715203.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.990 kcal (2) G-P(sol) polarization free energy of solvation -58.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds