Wall clock time and date at job start Mon Mar 30 2020 06:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 11 11 N 1.46899 * 109.47365 * 59.99653 * 9 7 2 12 12 C 1.50706 * 109.47294 * 179.97438 * 9 7 2 13 13 C 1.38670 * 120.42123 * 99.71396 * 12 9 7 14 14 C 1.38622 * 118.42238 * 179.78320 * 13 12 9 15 15 C 1.38229 * 119.16028 * 0.51910 * 14 13 12 16 16 C 1.50703 * 119.62235 * 179.70407 * 15 14 13 17 17 F 1.39892 * 109.47520 * 185.02159 * 16 15 14 18 18 F 1.39900 * 109.46888 * 305.02317 * 16 15 14 19 19 F 1.39904 * 109.46834 * 65.01700 * 16 15 14 20 20 N 1.31857 * 120.76455 * 359.72279 * 15 14 13 21 21 C 1.31887 * 121.72077 * 0.02562 * 20 15 14 22 22 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 23 23 H 1.00897 * 110.99782 * 60.00208 * 11 9 7 24 24 H 1.00903 * 110.99644 * 183.95724 * 11 9 7 25 25 H 1.08003 * 120.78563 * 0.02857 * 13 12 9 26 26 H 1.07997 * 120.42137 * 180.26639 * 14 13 12 27 27 H 1.08006 * 119.61208 * 180.02562 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8904 11 7 0.4069 -2.5773 -1.1991 12 6 2.2304 -3.6446 0.0005 13 6 2.5334 -4.3094 1.1792 14 6 3.4364 -5.3600 1.1307 15 6 4.0091 -5.7007 -0.0803 16 6 4.9972 -6.8368 -0.1438 17 9 5.5257 -6.9237 -1.4361 18 9 6.0322 -6.6061 0.7688 19 9 4.3509 -8.0353 0.1774 20 7 3.7011 -5.0428 -1.1808 21 6 2.8427 -4.0416 -1.1729 22 1 -0.4850 -0.8401 -0.0004 23 1 0.9652 -2.5260 -2.0380 24 1 -0.1570 -3.4140 -1.1905 25 1 2.0736 -4.0181 2.1120 26 1 3.6924 -5.9029 2.0286 27 1 2.6150 -3.5265 -2.0945 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095715257.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:17 Heat of formation + Delta-G solvation = -120.338668 kcal Electronic energy + Delta-G solvation = -17471.627112 eV Core-core repulsion = 14007.206038 eV Total energy + Delta-G solvation = -3464.421074 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.08976 -47.63776 -47.53161 -40.16679 -35.62146 -32.37167 -32.01301 -30.48814 -26.83994 -25.26146 -23.72348 -22.60711 -20.90374 -18.55917 -18.48739 -18.34719 -17.08177 -16.30300 -15.21466 -14.82874 -14.59979 -14.53249 -14.31739 -14.02247 -13.80856 -13.71528 -13.70924 -13.69025 -13.25831 -12.75373 -12.32586 -12.13892 -11.34247 -10.83708 -10.71030 -10.14477 -9.77848 -9.48743 -9.30178 -8.54219 -8.41767 -7.76664 -6.35760 -4.22059 1.01116 1.37935 2.59026 3.40564 3.41569 3.60147 3.62955 3.72220 4.05108 4.46660 4.50216 4.78079 5.08825 5.12127 5.25116 5.32126 5.60163 5.70945 5.84571 6.14961 6.37664 6.75334 6.90389 7.69885 7.86397 8.04575 8.42139 8.51411 8.85663 9.62094 11.04457 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.039975 B = 0.005656 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.265911 B = 4948.881123 C = 5134.988093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.043 3.957 3 Si 1.065 2.935 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.616 4.616 8 H 0.048 0.952 9 C 0.239 3.761 10 H 0.047 0.953 11 N -0.828 5.828 12 C -0.082 4.082 13 C -0.082 4.082 14 C -0.119 4.119 15 C 0.001 3.999 16 C 0.525 3.475 17 F -0.166 7.166 18 F -0.176 7.176 19 F -0.177 7.177 20 N -0.444 5.444 21 C 0.098 3.902 22 H 0.290 0.710 23 H 0.329 0.671 24 H 0.305 0.695 25 H 0.143 0.857 26 H 0.138 0.862 27 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.104 -11.322 1.363 12.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.168 4.168 3 Si 0.893 3.107 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.654 4.654 8 H 0.066 0.934 9 C 0.129 3.871 10 H 0.064 0.936 11 N -0.356 5.356 12 C -0.086 4.086 13 C -0.108 4.108 14 C -0.140 4.140 15 C -0.138 4.138 16 C 0.470 3.530 17 F -0.147 7.147 18 F -0.157 7.157 19 F -0.159 7.159 20 N -0.152 5.152 21 C -0.061 4.061 22 H 0.103 0.897 23 H 0.142 0.858 24 H 0.116 0.884 25 H 0.161 0.839 26 H 0.155 0.845 27 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.956 -9.287 0.832 11.064 hybrid contribution 0.675 -2.526 0.570 2.676 sum 6.632 -11.813 1.402 13.619 Atomic orbital electron populations 1.70573 1.06836 1.32881 1.41340 1.25659 0.96511 1.01884 0.92768 0.83617 0.74954 0.75562 0.76538 1.20732 1.21446 1.21565 1.21617 0.93435 0.90005 1.60345 0.93365 1.18470 0.87814 0.89870 0.90932 0.93558 1.59420 1.28408 1.42607 1.05180 1.22858 0.96797 0.95922 0.93018 1.21565 0.96288 0.93561 0.99417 1.21695 0.96789 0.98072 0.97421 1.20640 1.01635 0.99281 0.92236 1.17934 0.79714 0.81453 0.73938 1.93203 1.87230 1.96393 1.37905 1.93203 1.60526 1.94541 1.67480 1.93201 1.81498 1.48505 1.92684 1.67116 1.12938 1.06476 1.28702 1.22556 0.92199 0.92287 0.99070 0.89694 0.85753 0.88372 0.83905 0.84464 0.81971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.04 13.51 55.43 0.75 -24.29 15 2 C 0.04 1.14 5.39 -17.82 -0.10 1.04 15 3 Si 1.06 23.97 29.90 -169.99 -5.08 18.89 15 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.29 -6.29 7.11 56.52 0.40 -5.89 15 6 H -0.29 -6.27 7.11 56.52 0.40 -5.87 15 7 C -0.62 -15.80 8.71 -34.44 -0.30 -16.10 15 8 H 0.05 1.27 7.74 -52.48 -0.41 0.86 15 9 C 0.24 5.26 2.48 -70.01 -0.17 5.08 15 10 H 0.05 1.09 7.90 -51.93 -0.41 0.68 15 11 N -0.83 -16.99 7.62 -6.65 -0.05 -17.05 15 12 C -0.08 -1.54 4.89 -104.48 -0.51 -2.05 15 13 C -0.08 -1.36 9.82 -39.28 -0.39 -1.75 15 14 C -0.12 -1.80 9.61 -39.44 -0.38 -2.18 15 15 C 0.00 0.01 6.26 -82.58 -0.52 -0.50 15 16 C 0.52 7.81 3.32 36.01 0.12 7.93 15 17 F -0.17 -2.62 16.85 2.25 0.04 -2.58 15 18 F -0.18 -2.50 17.16 2.25 0.04 -2.46 15 19 F -0.18 -2.48 17.28 2.25 0.04 -2.44 15 20 N -0.44 -8.06 9.74 -9.47 -0.09 -8.15 15 21 C 0.10 1.78 10.46 -17.55 -0.18 1.60 15 22 H 0.29 8.16 6.39 -40.82 -0.26 7.90 15 23 H 0.33 6.45 7.36 -39.29 -0.29 6.16 15 24 H 0.31 5.45 9.06 -39.29 -0.36 5.10 15 25 H 0.14 2.12 8.06 -52.48 -0.42 1.69 15 26 H 0.14 1.63 8.06 -52.49 -0.42 1.21 15 27 H 0.16 2.80 6.68 -52.48 -0.35 2.45 15 LS Contribution 255.59 15.07 3.85 3.85 Total: -1.00 -28.21 255.59 -4.65 -32.86 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -1.71 Total: 8.29 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -2.43 Total: -6.92 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: 0.61 Total: -49.49 kcal Atomic # 9 Polarization: -7.59 SS G_CDS: 0.12 Total: -7.48 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -5.08 Total: 18.89 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.21 -4.65 -32.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095715257.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.479 kcal (2) G-P(sol) polarization free energy of solvation -28.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds