Wall clock time and date at job start Mon Mar 30 2020 06:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 11 11 N 1.46899 * 109.47365 * 59.99653 * 9 7 2 12 12 C 1.50706 * 109.47294 * 179.97438 * 9 7 2 13 13 C 1.38670 * 120.42123 * 99.71396 * 12 9 7 14 14 C 1.38622 * 118.42238 * 179.78320 * 13 12 9 15 15 C 1.38229 * 119.16028 * 0.51910 * 14 13 12 16 16 C 1.50703 * 119.62235 * 179.70407 * 15 14 13 17 17 F 1.39892 * 109.47520 * 185.02159 * 16 15 14 18 18 F 1.39900 * 109.46888 * 305.02317 * 16 15 14 19 19 F 1.39904 * 109.46834 * 65.01700 * 16 15 14 20 20 N 1.31857 * 120.76455 * 359.72279 * 15 14 13 21 21 C 1.31887 * 121.72077 * 0.02562 * 20 15 14 22 22 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 23 23 H 1.00897 * 110.99782 * 60.00208 * 11 9 7 24 24 H 1.00903 * 110.99644 * 183.95724 * 11 9 7 25 25 H 1.08003 * 120.78563 * 0.02857 * 13 12 9 26 26 H 1.07997 * 120.42137 * 180.26639 * 14 13 12 27 27 H 1.08006 * 119.61208 * 180.02562 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8904 11 7 0.4069 -2.5773 -1.1991 12 6 2.2304 -3.6446 0.0005 13 6 2.5334 -4.3094 1.1792 14 6 3.4364 -5.3600 1.1307 15 6 4.0091 -5.7007 -0.0803 16 6 4.9972 -6.8368 -0.1438 17 9 5.5257 -6.9237 -1.4361 18 9 6.0322 -6.6061 0.7688 19 9 4.3509 -8.0353 0.1774 20 7 3.7011 -5.0428 -1.1808 21 6 2.8427 -4.0416 -1.1729 22 1 -0.4850 -0.8401 -0.0004 23 1 0.9652 -2.5260 -2.0380 24 1 -0.1570 -3.4140 -1.1905 25 1 2.0736 -4.0181 2.1120 26 1 3.6924 -5.9029 2.0286 27 1 2.6150 -3.5265 -2.0945 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095715257.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:17 Heat of formation + Delta-G solvation = -138.708329 kcal Electronic energy + Delta-G solvation = -17472.423681 eV Core-core repulsion = 14007.206038 eV Total energy + Delta-G solvation = -3465.217642 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -51.26100 -48.77950 -48.72783 -41.53349 -37.29836 -34.00657 -33.50536 -32.03115 -28.38386 -26.89415 -25.20378 -24.03356 -22.49014 -19.79769 -19.64802 -19.57181 -18.95641 -17.70631 -16.70913 -16.32322 -16.02993 -15.73523 -15.54405 -15.50094 -15.17717 -15.15782 -14.89597 -14.88395 -14.68765 -14.20514 -14.06651 -13.64426 -12.84859 -12.59993 -12.49649 -11.91503 -11.27981 -10.87015 -10.81673 -10.49728 -10.11713 -9.40577 -8.40951 -6.29066 -0.33310 0.04898 1.36650 1.59146 1.64318 1.83586 2.36023 2.41563 2.64058 2.83069 3.28339 3.30095 3.53730 3.77642 3.87115 3.92140 4.13222 4.20021 4.43945 4.81096 4.91189 5.26578 5.39841 5.83439 6.15008 6.51430 6.60098 6.75062 6.97448 7.61357 8.97135 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.039975 B = 0.005656 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.265911 B = 4948.881123 C = 5134.988093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.002 4.002 3 Si 1.106 2.894 4 H -0.287 1.287 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.620 4.620 8 H 0.037 0.963 9 C 0.245 3.755 10 H 0.027 0.973 11 N -0.836 5.836 12 C -0.101 4.101 13 C -0.080 4.080 14 C -0.107 4.107 15 C -0.006 4.006 16 C 0.533 3.467 17 F -0.172 7.172 18 F -0.169 7.169 19 F -0.169 7.169 20 N -0.460 5.460 21 C 0.094 3.906 22 H 0.282 0.718 23 H 0.333 0.667 24 H 0.322 0.678 25 H 0.159 0.841 26 H 0.176 0.824 27 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.184 -12.226 1.993 14.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.207 4.207 3 Si 0.930 3.070 4 H -0.213 1.213 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.659 4.659 8 H 0.055 0.945 9 C 0.135 3.865 10 H 0.045 0.955 11 N -0.365 5.365 12 C -0.105 4.105 13 C -0.107 4.107 14 C -0.127 4.127 15 C -0.144 4.144 16 C 0.478 3.522 17 F -0.153 7.153 18 F -0.150 7.150 19 F -0.151 7.151 20 N -0.168 5.168 21 C -0.065 4.065 22 H 0.093 0.907 23 H 0.147 0.853 24 H 0.134 0.866 25 H 0.177 0.823 26 H 0.193 0.807 27 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.047 -10.214 1.458 12.494 hybrid contribution 0.382 -2.372 0.396 2.435 sum 7.430 -12.586 1.854 14.732 Atomic orbital electron populations 1.70676 1.07688 1.32420 1.44113 1.26804 0.96609 1.05088 0.92234 0.83068 0.74170 0.72414 0.77394 1.21268 1.20356 1.20143 1.21894 0.93101 0.91815 1.59044 0.94490 1.18117 0.88020 0.89823 0.90583 0.95477 1.59179 1.28631 1.43851 1.04868 1.22543 0.97376 0.96149 0.94463 1.21803 0.96194 0.93481 0.99192 1.22023 0.95202 0.97172 0.98257 1.21061 1.01627 0.99309 0.92439 1.17689 0.79486 0.81202 0.73858 1.93196 1.87278 1.96400 1.38450 1.93222 1.60158 1.94518 1.67149 1.93223 1.81367 1.47886 1.92580 1.67131 1.13213 1.06748 1.29742 1.22526 0.92385 0.92568 0.98999 0.90665 0.85269 0.86600 0.82291 0.80695 0.81879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.35 13.51 21.45 0.29 -52.06 15 2 C 0.00 -0.12 5.39 84.65 0.46 0.34 15 3 Si 1.11 48.12 29.90 68.60 2.05 50.17 15 4 H -0.29 -12.64 7.11 99.48 0.71 -11.94 15 5 H -0.28 -11.52 7.11 99.48 0.71 -10.81 15 6 H -0.28 -11.30 7.11 99.48 0.71 -10.59 15 7 C -0.62 -31.86 8.71 25.60 0.22 -31.63 15 8 H 0.04 1.94 7.74 -2.91 -0.02 1.92 15 9 C 0.24 10.79 2.48 43.42 0.11 10.90 15 10 H 0.03 1.30 7.90 -2.39 -0.02 1.28 15 11 N -0.84 -34.41 7.62 -174.95 -1.33 -35.74 15 12 C -0.10 -3.73 4.89 -19.77 -0.10 -3.83 15 13 C -0.08 -2.50 9.82 22.46 0.22 -2.28 15 14 C -0.11 -2.88 9.61 22.36 0.21 -2.66 15 15 C -0.01 -0.17 6.26 42.55 0.27 0.10 15 16 C 0.53 14.46 3.32 71.24 0.24 14.69 15 17 F -0.17 -5.08 16.85 44.97 0.76 -4.33 15 18 F -0.17 -4.30 17.16 44.97 0.77 -3.52 15 19 F -0.17 -4.23 17.28 44.97 0.78 -3.46 15 20 N -0.46 -16.01 9.74 -183.88 -1.79 -17.81 15 21 C 0.09 3.34 10.46 84.67 0.89 4.23 15 22 H 0.28 16.09 6.39 -92.71 -0.59 15.50 15 23 H 0.33 13.12 7.36 -89.70 -0.66 12.46 15 24 H 0.32 11.44 9.06 -89.69 -0.81 10.62 15 25 H 0.16 4.36 8.06 -2.91 -0.02 4.34 15 26 H 0.18 3.36 8.06 -2.91 -0.02 3.34 15 27 H 0.16 5.62 6.68 -2.91 -0.02 5.60 15 Total: -1.00 -59.17 255.59 3.98 -55.18 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -0.05 Total: 21.71 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 2.51 Total: -10.16 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -2.83 Total: -105.60 kcal Atomic # 9 Polarization: -13.61 SS G_CDS: 2.31 Total: -11.31 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.05 Total: 50.17 kcal Total: -59.17 3.98 -55.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095715257.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.527 kcal (2) G-P(sol) polarization free energy of solvation -59.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds