Wall clock time and date at job start Mon Mar 30 2020 05:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00128 * 2 1 4 4 H 1.48505 * 109.47012 * 240.00011 * 3 2 1 5 5 H 1.48496 * 109.47221 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47151 * 120.00120 * 3 2 1 7 7 C 1.37885 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99923 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.50694 * 109.47497 * 180.02562 * 9 7 2 11 11 C 1.38169 * 120.02852 * 265.00833 * 10 9 7 12 12 C 1.38242 * 120.05494 * 180.02562 * 11 10 9 13 13 C 1.38295 * 120.11401 * 359.94904 * 12 11 10 14 14 C 1.38122 * 120.05026 * 0.02562 * 13 12 11 15 15 C 1.38711 * 120.02640 * 85.01965 * 10 9 7 16 16 O 1.35897 * 120.05656 * 359.96228 * 15 10 9 17 17 C 1.42904 * 116.99817 * 179.97438 * 16 15 10 18 18 F 1.39897 * 109.46839 * 60.00590 * 17 16 15 19 19 F 1.39901 * 109.46844 * 179.97438 * 17 16 15 20 20 F 1.39893 * 109.47233 * 300.00242 * 17 16 15 21 21 H 0.96994 * 119.99883 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46745 * 60.00255 * 9 7 2 23 23 H 1.09006 * 109.47291 * 300.00641 * 9 7 2 24 24 H 1.07998 * 119.97347 * 0.02562 * 11 10 9 25 25 H 1.07997 * 119.94707 * 179.97438 * 12 11 10 26 26 H 1.07997 * 119.97026 * 179.74858 * 13 12 11 27 27 H 1.08002 * 120.02294 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2302 -3.6447 -0.0005 11 6 2.6004 -4.2379 -1.1922 12 6 3.4982 -5.2891 -1.1928 13 6 4.0289 -5.7490 -0.0014 14 6 3.6624 -5.1589 1.1924 15 6 2.7605 -4.1045 1.1959 16 8 2.3984 -3.5224 2.3693 17 6 2.9838 -4.0482 3.5621 18 9 4.3754 -3.9218 3.4935 19 9 2.5056 -3.3380 4.6685 20 9 2.6441 -5.3990 3.6921 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8904 23 1 0.6246 -2.5571 0.8897 24 1 2.1880 -3.8801 -2.1240 25 1 3.7860 -5.7517 -2.1253 26 1 4.7270 -6.5730 -0.0042 27 1 4.0768 -5.5187 2.1226 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106487587.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:12 Heat of formation + Delta-G solvation = -179.524487 kcal Electronic energy + Delta-G solvation = -17949.119476 eV Core-core repulsion = 14449.839161 eV Total energy + Delta-G solvation = -3499.280315 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.13205 -47.83999 -47.73476 -39.77324 -37.14915 -33.52994 -31.37849 -29.86776 -27.14502 -25.59364 -23.42855 -22.23868 -20.85956 -19.15360 -18.83998 -18.49163 -16.40024 -16.17293 -15.58516 -14.82669 -14.75322 -14.53482 -14.39954 -14.18102 -14.05015 -14.03552 -13.81528 -13.44207 -12.72603 -12.56958 -12.28805 -11.66171 -11.52819 -11.14868 -10.94299 -10.55283 -10.46865 -9.65838 -9.50812 -8.41651 -8.37764 -7.83597 -6.03944 -4.07450 1.68336 1.83591 1.96975 3.19085 3.32933 3.36817 3.40207 4.08437 4.14572 4.36802 4.47894 5.08288 5.14544 5.31531 5.41470 5.69963 5.88386 5.99208 6.44740 6.50199 6.72342 6.93884 7.01323 7.44678 7.53635 7.70139 7.90596 8.28581 8.95595 9.55728 11.06219 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.020065 B = 0.009123 C = 0.007126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.095142 B = 3068.471530 C = 3928.214768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.055 0.945 9 C 0.052 3.948 10 C -0.038 4.038 11 C -0.093 4.093 12 C -0.139 4.139 13 C -0.112 4.112 14 C -0.193 4.193 15 C 0.095 3.905 16 O -0.284 6.284 17 C 0.598 3.402 18 F -0.172 7.172 19 F -0.136 7.136 20 F -0.174 7.174 21 H 0.263 0.737 22 H 0.033 0.967 23 H 0.035 0.965 24 H 0.132 0.868 25 H 0.120 0.880 26 H 0.121 0.879 27 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.424 -10.500 3.359 12.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.015 3.985 10 C -0.038 4.038 11 C -0.111 4.111 12 C -0.157 4.157 13 C -0.130 4.130 14 C -0.212 4.212 15 C 0.053 3.947 16 O -0.203 6.203 17 C 0.506 3.494 18 F -0.154 7.154 19 F -0.118 7.118 20 F -0.156 7.156 21 H 0.072 0.928 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.150 0.850 25 H 0.138 0.862 26 H 0.139 0.861 27 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.150 -10.236 3.425 12.423 hybrid contribution 0.683 0.791 0.397 1.118 sum 6.833 -9.444 3.822 12.268 Atomic orbital electron populations 1.69939 1.06003 1.26958 1.50317 1.24974 0.94877 0.99175 0.95105 0.86602 0.79570 0.82824 0.78743 1.20141 1.21172 1.20151 1.20938 0.92871 0.89720 1.51280 0.92640 1.18300 0.92338 0.89017 0.98836 1.20170 0.98117 0.97066 0.88494 1.21006 0.97429 0.95311 0.97400 1.21105 0.98714 0.98136 0.97715 1.20677 1.00488 1.00114 0.91718 1.21377 1.01159 0.98604 1.00043 1.18608 0.98119 0.94561 0.83403 1.86650 1.64813 1.56874 1.12008 1.19522 0.74916 0.74349 0.80582 1.93261 1.30524 1.95459 1.96123 1.93275 1.88566 1.78973 1.50950 1.93252 1.92094 1.34355 1.95926 0.92752 0.94892 0.94648 0.84989 0.86196 0.86146 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 15 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 15 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 7 C -0.51 -14.33 9.09 -34.44 -0.31 -14.64 15 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 15 9 C 0.05 1.33 4.83 -29.04 -0.14 1.19 15 10 C -0.04 -0.82 5.08 -104.48 -0.53 -1.35 15 11 C -0.09 -1.70 9.68 -39.61 -0.38 -2.09 15 12 C -0.14 -2.11 10.04 -39.56 -0.40 -2.50 15 13 C -0.11 -1.67 10.04 -39.60 -0.40 -2.07 15 14 C -0.19 -3.28 8.26 -39.43 -0.33 -3.60 15 15 C 0.10 1.93 6.46 -39.22 -0.25 1.68 15 16 O -0.28 -5.92 9.51 -19.42 -0.18 -6.10 15 17 C 0.60 10.09 3.42 101.05 0.35 10.43 15 18 F -0.17 -2.76 15.56 2.25 0.04 -2.73 15 19 F -0.14 -2.24 17.53 2.25 0.04 -2.20 15 20 F -0.17 -2.67 15.57 2.25 0.04 -2.63 15 21 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 22 H 0.03 0.87 8.05 -51.93 -0.42 0.45 15 23 H 0.04 0.98 7.69 -51.93 -0.40 0.58 15 24 H 0.13 2.24 8.06 -52.49 -0.42 1.82 15 25 H 0.12 1.43 8.06 -52.49 -0.42 1.01 15 26 H 0.12 1.40 8.06 -52.49 -0.42 0.98 15 27 H 0.12 1.88 5.10 -52.49 -0.27 1.61 15 LS Contribution 255.73 15.07 3.85 3.85 Total: -1.00 -29.46 255.73 -4.89 -34.36 By element: Atomic # 1 Polarization: -2.31 SS G_CDS: -1.89 Total: -4.20 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -2.49 Total: -11.34 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.74 Total: -25.69 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.18 Total: -6.10 kcal Atomic # 9 Polarization: -7.66 SS G_CDS: 0.11 Total: -7.56 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.46 -4.89 -34.36 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106487587.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.169 kcal (2) G-P(sol) polarization free energy of solvation -29.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds