Wall clock time and date at job start Mon Mar 30 2020 05:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00128 * 2 1 4 4 H 1.48505 * 109.47012 * 240.00011 * 3 2 1 5 5 H 1.48496 * 109.47221 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47151 * 120.00120 * 3 2 1 7 7 C 1.37885 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99923 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.50694 * 109.47497 * 180.02562 * 9 7 2 11 11 C 1.38169 * 120.02852 * 265.00833 * 10 9 7 12 12 C 1.38242 * 120.05494 * 180.02562 * 11 10 9 13 13 C 1.38295 * 120.11401 * 359.94904 * 12 11 10 14 14 C 1.38122 * 120.05026 * 0.02562 * 13 12 11 15 15 C 1.38711 * 120.02640 * 85.01965 * 10 9 7 16 16 O 1.35897 * 120.05656 * 359.96228 * 15 10 9 17 17 C 1.42904 * 116.99817 * 179.97438 * 16 15 10 18 18 F 1.39897 * 109.46839 * 60.00590 * 17 16 15 19 19 F 1.39901 * 109.46844 * 179.97438 * 17 16 15 20 20 F 1.39893 * 109.47233 * 300.00242 * 17 16 15 21 21 H 0.96994 * 119.99883 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46745 * 60.00255 * 9 7 2 23 23 H 1.09006 * 109.47291 * 300.00641 * 9 7 2 24 24 H 1.07998 * 119.97347 * 0.02562 * 11 10 9 25 25 H 1.07997 * 119.94707 * 179.97438 * 12 11 10 26 26 H 1.07997 * 119.97026 * 179.74858 * 13 12 11 27 27 H 1.08002 * 120.02294 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2302 -3.6447 -0.0005 11 6 2.6004 -4.2379 -1.1922 12 6 3.4982 -5.2891 -1.1928 13 6 4.0289 -5.7490 -0.0014 14 6 3.6624 -5.1589 1.1924 15 6 2.7605 -4.1045 1.1959 16 8 2.3984 -3.5224 2.3693 17 6 2.9838 -4.0482 3.5621 18 9 4.3754 -3.9218 3.4935 19 9 2.5056 -3.3380 4.6685 20 9 2.6441 -5.3990 3.6921 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8904 23 1 0.6246 -2.5571 0.8897 24 1 2.1880 -3.8801 -2.1240 25 1 3.7860 -5.7517 -2.1253 26 1 4.7270 -6.5730 -0.0042 27 1 4.0768 -5.5187 2.1226 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106487587.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:12 Heat of formation + Delta-G solvation = -196.684640 kcal Electronic energy + Delta-G solvation = -17949.863596 eV Core-core repulsion = 14449.839161 eV Total energy + Delta-G solvation = -3500.024435 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -51.45554 -49.16883 -49.03555 -41.21026 -38.57255 -35.50815 -33.15536 -31.22931 -28.99563 -26.96038 -25.33553 -23.60923 -22.42440 -20.52406 -20.17601 -19.85729 -18.53109 -17.58744 -17.01648 -16.45221 -16.20518 -16.06964 -15.78746 -15.50779 -15.43756 -15.32969 -15.16365 -14.84763 -14.38729 -14.13372 -14.04907 -13.38572 -13.13748 -12.81889 -12.65704 -12.37489 -12.12475 -11.60316 -11.42200 -10.60159 -9.77468 -9.31948 -8.20186 -6.32580 0.33146 0.45239 0.60353 1.38402 1.41350 1.49341 1.81929 2.39055 2.75764 2.79675 3.04634 3.10972 3.79052 3.83166 4.24230 4.36446 4.48164 4.61719 4.99059 5.11756 5.33694 5.38467 5.47714 5.58502 5.73323 5.86085 6.07630 6.20122 6.78005 7.34957 8.89431 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.020065 B = 0.009123 C = 0.007126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.095142 B = 3068.471530 C = 3928.214768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.962 3.038 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.051 0.949 9 C 0.064 3.936 10 C -0.080 4.080 11 C -0.100 4.100 12 C -0.125 4.125 13 C -0.094 4.094 14 C -0.194 4.194 15 C 0.074 3.926 16 O -0.320 6.320 17 C 0.605 3.395 18 F -0.164 7.164 19 F -0.136 7.136 20 F -0.162 7.162 21 H 0.265 0.735 22 H 0.012 0.988 23 H -0.001 1.001 24 H 0.135 0.865 25 H 0.164 0.836 26 H 0.168 0.832 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.740 -11.782 2.829 14.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.786 3.214 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.069 0.931 9 C 0.027 3.973 10 C -0.081 4.081 11 C -0.118 4.118 12 C -0.143 4.143 13 C -0.112 4.112 14 C -0.213 4.213 15 C 0.033 3.967 16 O -0.240 6.240 17 C 0.514 3.486 18 F -0.147 7.147 19 F -0.117 7.117 20 F -0.144 7.144 21 H 0.074 0.926 22 H 0.030 0.970 23 H 0.017 0.983 24 H 0.153 0.847 25 H 0.181 0.819 26 H 0.185 0.815 27 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.476 -11.534 2.894 14.603 hybrid contribution -0.011 1.068 0.560 1.207 sum 8.465 -10.465 3.455 13.897 Atomic orbital electron populations 1.70066 1.07605 1.27968 1.51291 1.25885 0.95757 1.02973 0.94623 0.85551 0.78401 0.78313 0.79138 1.18803 1.20399 1.19780 1.21263 0.92827 0.91201 1.50927 0.93058 1.17947 0.92707 0.90722 0.95956 1.19929 0.99623 0.97655 0.90897 1.21162 0.98198 0.96215 0.96225 1.21531 0.96580 0.96299 0.99850 1.21275 0.99515 0.99959 0.90445 1.21653 1.00174 0.97495 1.01958 1.18811 0.99355 0.95876 0.82685 1.86578 1.65920 1.58215 1.13288 1.19319 0.74988 0.74649 0.79666 1.93266 1.29855 1.95476 1.96055 1.93274 1.88624 1.79105 1.50717 1.93267 1.92046 1.33319 1.95796 0.92571 0.96961 0.98290 0.84710 0.81872 0.81485 0.84159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.85 13.29 21.45 0.28 -56.57 15 2 C 0.01 0.34 5.46 84.66 0.46 0.80 15 3 Si 0.96 45.01 29.54 68.60 2.03 47.04 15 4 H -0.26 -11.71 7.11 99.48 0.71 -11.00 15 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 15 6 H -0.27 -12.51 7.11 99.48 0.71 -11.81 15 7 C -0.52 -30.50 9.09 25.60 0.23 -30.26 15 8 H 0.05 2.94 7.74 -2.91 -0.02 2.92 15 9 C 0.06 3.47 4.83 29.10 0.14 3.61 15 10 C -0.08 -3.56 5.08 -19.77 -0.10 -3.66 15 11 C -0.10 -3.56 9.68 22.25 0.22 -3.34 15 12 C -0.12 -3.30 10.04 22.28 0.22 -3.08 15 13 C -0.09 -2.38 10.04 22.26 0.22 -2.15 15 14 C -0.19 -6.10 8.26 22.37 0.18 -5.92 15 15 C 0.07 3.02 6.46 22.51 0.15 3.16 15 16 O -0.32 -13.67 9.51 -92.39 -0.88 -14.55 15 17 C 0.60 20.19 3.42 113.37 0.39 20.58 15 18 F -0.16 -5.09 15.56 44.97 0.70 -4.39 15 19 F -0.14 -4.46 17.53 44.97 0.79 -3.67 15 20 F -0.16 -4.77 15.57 44.97 0.70 -4.07 15 21 H 0.27 15.24 8.31 -92.71 -0.77 14.47 15 22 H 0.01 0.69 8.05 -2.38 -0.02 0.67 15 23 H 0.00 -0.07 7.69 -2.38 -0.02 -0.09 15 24 H 0.14 4.55 8.06 -2.91 -0.02 4.53 15 25 H 0.16 2.94 8.06 -2.91 -0.02 2.92 15 26 H 0.17 2.73 8.06 -2.91 -0.02 2.71 15 27 H 0.14 3.85 5.10 -2.91 -0.01 3.83 15 Total: -1.00 -66.18 255.73 6.94 -59.24 By element: Atomic # 1 Polarization: -3.97 SS G_CDS: 1.20 Total: -2.77 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 2.12 Total: -20.26 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.28 Total: -56.57 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.88 Total: -14.55 kcal Atomic # 9 Polarization: -14.32 SS G_CDS: 2.19 Total: -12.14 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -66.18 6.94 -59.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106487587.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.444 kcal (2) G-P(sol) polarization free energy of solvation -66.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds