Wall clock time and date at job start Mon Mar 30 2020 05:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.38465 * 120.00369 * 90.00021 * 11 10 9 13 13 F 1.35094 * 119.99867 * 359.97438 * 12 11 10 14 14 C 1.38430 * 120.00838 * 179.97438 * 12 11 10 15 15 C 1.38225 * 120.02489 * 0.02562 * 14 12 11 16 16 C 1.38392 * 120.01295 * 0.02562 * 15 14 12 17 17 F 1.35096 * 120.00759 * 180.02562 * 16 15 14 18 18 C 1.38261 * 120.00759 * 269.72781 * 11 10 9 19 19 Cl 1.73599 * 120.01098 * 359.97438 * 18 11 10 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 24 24 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 25 25 H 1.07999 * 119.98864 * 180.02562 * 14 12 11 26 26 H 1.08003 * 119.99685 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.1450 -5.5672 -1.1976 13 9 1.4819 -4.9823 -2.3679 14 6 0.4533 -6.7663 -1.1972 15 6 0.1079 -7.3650 -0.0002 16 6 0.4529 -6.7656 1.1986 17 9 0.1156 -7.3512 2.3684 18 6 1.1512 -5.5685 1.1987 19 17 1.5922 -4.8207 2.7020 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.8718 -3.6044 -0.8895 24 1 2.8718 -3.6044 0.8904 25 1 0.1835 -7.2342 -2.1324 26 1 -0.4314 -8.3008 -0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106487800.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:24 Heat of formation + Delta-G solvation = -88.651595 kcal Electronic energy + Delta-G solvation = -15216.982524 eV Core-core repulsion = 12149.979129 eV Total energy + Delta-G solvation = -3067.003395 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.91794 -48.69525 -38.98086 -36.29536 -34.24267 -32.23647 -30.03781 -29.05293 -25.36899 -22.94447 -22.39831 -20.49948 -17.65019 -17.34607 -17.11264 -16.31093 -15.82483 -15.19318 -14.72711 -14.47268 -14.35211 -13.69732 -13.36888 -12.81816 -12.70366 -12.39638 -12.19608 -11.47632 -11.23342 -11.11419 -10.94528 -10.68593 -10.53513 -9.90528 -9.77589 -9.15764 -8.64121 -8.37874 -8.36285 -6.01165 -4.04124 0.88521 1.02590 2.17360 3.31561 3.32255 3.38436 3.41907 4.06511 4.30023 4.44943 4.59648 4.84198 5.06088 5.35056 5.47221 5.71113 5.83742 5.94895 6.01384 6.45165 6.47365 6.68684 6.92568 7.62209 7.72960 7.96479 8.36146 9.01351 9.59757 11.10127 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.028176 B = 0.007026 C = 0.006064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.524121 B = 3984.363445 C = 4616.513059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.033 3.967 10 C -0.086 4.086 11 C -0.057 4.057 12 C 0.101 3.899 13 F -0.123 7.123 14 C -0.122 4.122 15 C -0.133 4.133 16 C 0.097 3.903 17 F -0.128 7.128 18 C -0.052 4.052 19 Cl -0.031 7.031 20 H 0.261 0.739 21 H 0.023 0.977 22 H 0.017 0.983 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.147 0.853 26 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.012 -14.696 0.274 14.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.123 4.123 11 C -0.059 4.059 12 C 0.081 3.919 13 F -0.102 7.102 14 C -0.141 4.141 15 C -0.152 4.152 16 C 0.077 3.923 17 F -0.107 7.107 18 C -0.080 4.080 19 Cl -0.001 7.001 20 H 0.071 0.929 21 H 0.042 0.958 22 H 0.036 0.964 23 H 0.090 0.910 24 H 0.095 0.905 25 H 0.165 0.835 26 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.901 -14.503 0.421 14.537 hybrid contribution 0.344 0.994 0.110 1.058 sum 1.246 -13.509 0.531 13.576 Atomic orbital electron populations 1.69966 1.06069 1.26682 1.50532 1.24997 0.94835 0.99227 0.95204 0.86580 0.79855 0.83382 0.78118 1.20635 1.21217 1.19808 1.21155 0.93047 0.90627 1.51006 0.92471 1.19052 0.93456 0.90067 0.97779 1.21001 0.98901 0.89477 1.02967 1.20222 0.98137 0.98132 0.89390 1.17340 1.00358 0.92910 0.81323 1.91538 1.90219 1.83696 1.44723 1.21012 0.99219 0.94595 0.99295 1.20767 1.03063 1.01677 0.89684 1.17358 1.00479 0.92304 0.82206 1.91519 1.90348 1.83202 1.45603 1.20611 1.03549 0.94451 0.89361 1.98396 1.91114 1.81492 1.29126 0.92935 0.95847 0.96425 0.90977 0.90487 0.83481 0.83315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.29 55.43 0.74 -26.14 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 15 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 15 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 15 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 15 9 C 0.03 0.86 4.95 -27.88 -0.14 0.72 15 10 C -0.09 -1.79 4.71 -27.89 -0.13 -1.92 15 11 C -0.06 -1.03 5.14 -104.53 -0.54 -1.57 15 12 C 0.10 1.62 7.24 -39.43 -0.29 1.34 15 13 F -0.12 -2.14 16.48 2.25 0.04 -2.10 15 14 C -0.12 -1.52 10.02 -39.52 -0.40 -1.91 15 15 C -0.13 -1.58 10.02 -39.53 -0.40 -1.97 15 16 C 0.10 1.41 7.27 -39.39 -0.29 1.12 15 17 F -0.13 -1.85 16.84 2.25 0.04 -1.81 15 18 C -0.05 -0.87 6.32 -39.44 -0.25 -1.12 15 19 Cl -0.03 -0.53 26.95 -51.86 -1.40 -1.92 15 20 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 21 H 0.02 0.64 8.14 -51.93 -0.42 0.21 15 22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15 23 H 0.07 1.46 7.64 -51.93 -0.40 1.07 15 24 H 0.08 1.55 6.89 -51.93 -0.36 1.20 15 25 H 0.15 1.36 8.06 -52.49 -0.42 0.93 15 26 H 0.15 1.26 8.06 -52.48 -0.42 0.84 15 LS Contribution 257.64 15.07 3.88 3.88 Total: -1.00 -29.92 257.64 -6.54 -36.46 By element: Atomic # 1 Polarization: -4.35 SS G_CDS: -1.99 Total: -6.34 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -2.83 Total: -18.66 kcal Atomic # 7 Polarization: -26.88 SS G_CDS: 0.74 Total: -26.14 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.08 Total: -3.91 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.40 Total: -1.92 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.92 -6.54 -36.46 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106487800.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.191 kcal (2) G-P(sol) polarization free energy of solvation -29.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds