Wall clock time and date at job start Mon Mar 30 2020 05:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.38465 * 120.00369 * 90.00021 * 11 10 9 13 13 F 1.35094 * 119.99867 * 359.97438 * 12 11 10 14 14 C 1.38430 * 120.00838 * 179.97438 * 12 11 10 15 15 C 1.38225 * 120.02489 * 0.02562 * 14 12 11 16 16 C 1.38392 * 120.01295 * 0.02562 * 15 14 12 17 17 F 1.35096 * 120.00759 * 180.02562 * 16 15 14 18 18 C 1.38261 * 120.00759 * 269.72781 * 11 10 9 19 19 Cl 1.73599 * 120.01098 * 359.97438 * 18 11 10 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 24 24 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 25 25 H 1.07999 * 119.98864 * 180.02562 * 14 12 11 26 26 H 1.08003 * 119.99685 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.1450 -5.5672 -1.1976 13 9 1.4819 -4.9823 -2.3679 14 6 0.4533 -6.7663 -1.1972 15 6 0.1079 -7.3650 -0.0002 16 6 0.4529 -6.7656 1.1986 17 9 0.1156 -7.3512 2.3684 18 6 1.1512 -5.5685 1.1987 19 17 1.5922 -4.8207 2.7020 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.8718 -3.6044 -0.8895 24 1 2.8718 -3.6044 0.8904 25 1 0.1835 -7.2342 -2.1324 26 1 -0.4314 -8.3008 -0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106487800.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:24 Heat of formation + Delta-G solvation = -104.770684 kcal Electronic energy + Delta-G solvation = -15217.681500 eV Core-core repulsion = 12149.979129 eV Total energy + Delta-G solvation = -3067.702372 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -50.05360 -49.98249 -40.20103 -37.58128 -36.05829 -34.08388 -31.30454 -30.62491 -27.18731 -24.31743 -23.85972 -22.13558 -18.92061 -18.61030 -18.56061 -18.09772 -17.06806 -16.54268 -16.39702 -15.95051 -15.50268 -15.09490 -14.89602 -14.35273 -14.10308 -13.92508 -13.77112 -13.26208 -12.85115 -12.68012 -12.39754 -12.35105 -12.05008 -11.74996 -11.68611 -11.22752 -10.56643 -9.93168 -9.61048 -8.20663 -6.32040 -0.27948 -0.14806 0.90385 1.40017 1.41360 1.52431 2.16029 2.40866 2.90563 3.12774 3.13540 3.48084 3.70626 3.90634 4.25864 4.42317 4.68553 4.75007 4.81887 4.83833 4.97572 5.05714 5.45245 5.59987 5.64348 5.80018 6.19586 6.82836 7.36945 8.91282 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.028176 B = 0.007026 C = 0.006064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.524121 B = 3984.363445 C = 4616.513059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.044 3.956 10 C -0.072 4.072 11 C -0.087 4.087 12 C 0.083 3.917 13 F -0.136 7.136 14 C -0.101 4.101 15 C -0.105 4.105 16 C 0.093 3.907 17 F -0.127 7.127 18 C -0.067 4.067 19 Cl -0.046 7.046 20 H 0.264 0.736 21 H -0.002 1.002 22 H -0.012 1.012 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.190 0.810 26 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.006 -16.205 -0.327 16.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.006 3.994 10 C -0.110 4.110 11 C -0.089 4.089 12 C 0.064 3.936 13 F -0.114 7.114 14 C -0.119 4.119 15 C -0.124 4.124 16 C 0.072 3.928 17 F -0.105 7.105 18 C -0.095 4.095 19 Cl -0.017 7.017 20 H 0.073 0.927 21 H 0.017 0.983 22 H 0.006 0.994 23 H 0.088 0.912 24 H 0.095 0.905 25 H 0.207 0.793 26 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 0.909 -16.026 -0.179 16.052 hybrid contribution 0.287 1.350 0.285 1.409 sum 1.196 -14.676 0.106 14.725 Atomic orbital electron populations 1.70100 1.07815 1.27798 1.51486 1.25942 0.95725 1.03250 0.94601 0.85457 0.78713 0.78427 0.78533 1.19706 1.20757 1.18670 1.21613 0.93575 0.91970 1.50800 0.91971 1.18817 0.93713 0.91836 0.94988 1.20623 0.97895 0.89648 1.02807 1.19966 1.00217 0.97735 0.90964 1.17682 1.01393 0.94337 0.80217 1.91505 1.90529 1.84224 1.45191 1.21457 0.96597 0.92493 1.01369 1.21313 1.00840 1.02350 0.87881 1.17569 1.00207 0.91665 0.83319 1.91528 1.90238 1.82943 1.45820 1.20747 1.04736 0.95577 0.88394 1.98381 1.91380 1.82012 1.29962 0.92737 0.98346 0.99391 0.91166 0.90530 0.79273 0.78585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.40 13.29 21.45 0.28 -57.11 15 2 C 0.00 0.16 5.46 84.66 0.46 0.62 15 3 Si 0.96 44.73 29.54 68.60 2.03 46.75 15 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 15 6 H -0.26 -11.62 7.11 99.48 0.71 -10.92 15 7 C -0.54 -31.22 9.11 25.60 0.23 -30.99 15 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 15 9 C 0.04 2.35 4.95 29.85 0.15 2.49 15 10 C -0.07 -3.11 4.71 29.85 0.14 -2.97 15 11 C -0.09 -3.15 5.14 -19.81 -0.10 -3.26 15 12 C 0.08 2.59 7.24 22.37 0.16 2.76 15 13 F -0.14 -4.67 16.48 44.97 0.74 -3.93 15 14 C -0.10 -2.11 10.02 22.31 0.22 -1.88 15 15 C -0.11 -2.03 10.02 22.30 0.22 -1.80 15 16 C 0.09 2.49 7.27 22.39 0.16 2.65 15 17 F -0.13 -3.37 16.84 44.97 0.76 -2.62 15 18 C -0.07 -2.23 6.32 22.36 0.14 -2.09 15 19 Cl -0.05 -1.63 26.95 -2.72 -0.07 -1.71 15 20 H 0.26 15.24 8.31 -92.71 -0.77 14.47 15 21 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 15 22 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 15 23 H 0.07 2.95 7.64 -2.39 -0.02 2.93 15 24 H 0.08 3.21 6.89 -2.39 -0.02 3.19 15 25 H 0.19 2.41 8.06 -2.91 -0.02 2.38 15 26 H 0.20 2.00 8.06 -2.91 -0.02 1.97 15 Total: -1.00 -66.79 257.64 6.74 -60.05 By element: Atomic # 1 Polarization: -8.18 SS G_CDS: 1.21 Total: -6.98 kcal Atomic # 6 Polarization: -36.26 SS G_CDS: 1.80 Total: -34.47 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.28 Total: -57.11 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 1.50 Total: -6.54 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.07 Total: -1.71 kcal Total: -66.79 6.74 -60.05 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106487800.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.722 kcal (2) G-P(sol) polarization free energy of solvation -66.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds