Wall clock time and date at job start Mon Mar 30 2020 06:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34868 * 116.99729 * 2 1 4 4 O 1.21572 * 119.99899 * 0.02562 * 3 2 1 5 5 C 1.46812 * 119.99812 * 180.02562 * 3 2 1 6 6 C 1.35838 * 125.09690 * 180.02562 * 5 3 2 7 7 C 1.46366 * 106.03271 * 180.02562 * 6 5 3 8 8 C 1.39175 * 134.05208 * 179.97438 * 7 6 5 9 9 C 1.40325 * 119.24517 * 180.02562 * 8 7 6 10 10 C 1.41360 * 120.12375 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99846 * 24.99316 * 10 9 8 12 12 C 1.39881 * 120.00375 * 204.98915 * 10 9 8 13 13 N 1.30873 * 120.00050 * 17.95967 * 12 10 9 14 14 Si 1.86805 * 120.00314 * 197.96560 * 12 10 9 15 15 H 1.48497 * 109.47060 * 94.50251 * 14 12 10 16 16 H 1.48499 * 109.47225 * 214.50829 * 14 12 10 17 17 H 1.48506 * 109.47016 * 334.50547 * 14 12 10 18 18 C 1.41150 * 119.75512 * 359.63705 * 9 8 7 19 19 C 1.36056 * 120.65206 * 0.69463 * 18 9 8 20 20 C 1.39568 * 120.46568 * 359.35300 * 19 18 9 21 21 O 1.34671 * 132.86813 * 180.30296 * 20 19 18 22 22 H 1.08998 * 109.47347 * 299.99456 * 1 2 3 23 23 H 1.08995 * 109.47766 * 59.99711 * 1 2 3 24 24 H 1.09000 * 109.47118 * 179.97438 * 1 2 3 25 25 H 1.08007 * 126.98746 * 0.06968 * 6 5 3 26 26 H 1.08002 * 120.37583 * 0.05927 * 8 7 6 27 27 H 0.97006 * 120.00332 * 179.97438 * 13 12 10 28 28 H 1.08005 * 119.67199 * 180.32612 * 18 9 8 29 29 H 1.08002 * 119.77072 * 179.63071 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2017 0.0000 4 8 1.4020 2.2213 0.0005 5 6 3.5303 1.2786 -0.0006 6 6 4.2521 2.4293 -0.0001 7 6 5.6586 2.0243 -0.0016 8 6 6.8653 2.7178 -0.0024 9 6 8.0697 1.9978 -0.0044 10 6 9.3060 2.6832 -0.0058 11 1 9.3677 3.6863 0.3898 12 6 10.4495 2.0624 -0.5194 13 7 10.3324 1.0212 -1.3036 14 14 12.1436 2.7193 -0.0858 15 1 12.6807 1.9723 1.0798 16 1 13.0535 2.5466 -1.2466 17 1 12.0432 4.1614 0.2542 18 6 8.0423 0.5866 0.0022 19 6 6.8586 -0.0842 -0.0037 20 6 5.6498 0.6135 -0.0028 21 8 4.3629 0.2167 -0.0024 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 3.8665 3.4382 0.0017 26 1 6.8745 3.7978 -0.0010 27 1 11.1253 0.5909 -1.6601 28 1 8.9701 0.0338 0.0060 29 1 6.8542 -1.1642 -0.0046 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108326386.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:57 Heat of formation + Delta-G solvation = -78.939274 kcal Electronic energy + Delta-G solvation = -16578.523466 eV Core-core repulsion = 13625.461593 eV Total energy + Delta-G solvation = -2953.061872 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.16096 -41.32262 -38.62819 -37.71118 -35.34737 -33.60078 -31.58989 -30.73935 -28.66999 -27.27246 -25.03787 -23.04274 -22.45758 -21.69296 -19.89506 -18.66450 -18.28229 -17.95219 -17.79347 -17.10457 -16.64210 -15.87196 -15.38074 -14.75829 -14.64638 -14.34829 -14.13475 -13.97441 -13.63791 -13.11743 -13.08683 -12.85499 -12.65058 -12.37644 -12.09205 -11.91464 -11.84083 -11.39094 -11.07120 -11.04778 -9.35772 -9.12631 -8.69711 -6.38196 -0.44257 0.76372 1.00469 1.23060 1.43193 1.51061 1.56500 1.83808 2.05602 2.22146 2.59489 3.52638 3.62857 3.91480 4.10211 4.22747 4.29843 4.33491 4.52625 4.68459 4.84574 4.90417 5.02149 5.08167 5.20988 5.32085 5.55314 5.67319 5.86445 5.97319 6.18929 6.46073 6.52606 6.81456 6.85536 8.27158 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.069519 B = 0.004623 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.672208 B = 6055.150141 C = 6375.299951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.563 3.437 4 O -0.505 6.505 5 C -0.048 4.048 6 C -0.108 4.108 7 C -0.119 4.119 8 C -0.220 4.220 9 C 0.074 3.926 10 C -0.487 4.487 11 H 0.082 0.918 12 C 0.038 3.962 13 N -0.822 5.822 14 Si 0.986 3.014 15 H -0.260 1.260 16 H -0.269 1.269 17 H -0.259 1.259 18 C -0.107 4.107 19 C -0.104 4.104 20 C -0.042 4.042 21 O -0.189 6.189 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.137 0.863 25 H 0.181 0.819 26 H 0.110 0.890 27 H 0.294 0.706 28 H 0.131 0.869 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.666 -2.349 1.870 9.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.408 3.592 4 O -0.396 6.396 5 C -0.097 4.097 6 C -0.128 4.128 7 C -0.120 4.120 8 C -0.240 4.240 9 C 0.072 3.928 10 C -0.516 4.516 11 H 0.100 0.900 12 C -0.178 4.178 13 N -0.448 5.448 14 Si 0.807 3.193 15 H -0.185 1.185 16 H -0.193 1.193 17 H -0.183 1.183 18 C -0.126 4.126 19 C -0.123 4.123 20 C -0.089 4.089 21 O -0.092 6.092 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.155 0.845 25 H 0.198 0.802 26 H 0.128 0.872 27 H 0.105 0.895 28 H 0.149 0.851 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.861 -2.531 1.715 9.374 hybrid contribution 0.563 0.388 -0.045 0.685 sum -8.298 -2.143 1.670 8.732 Atomic orbital electron populations 1.23759 0.73054 1.06427 1.03395 1.86680 1.26298 1.30726 1.83441 1.19150 0.84981 0.82375 0.72657 1.90880 1.64569 1.36407 1.47718 1.20563 0.88293 0.86523 1.14291 1.22918 0.90607 0.98798 1.00504 1.19823 0.93389 0.93201 1.05610 1.20500 0.89706 0.98297 1.15493 1.17871 0.93066 0.92283 0.89584 1.19792 0.92780 1.02303 1.36726 0.89954 1.26768 1.05195 0.94229 0.91589 1.69825 1.34037 1.18959 1.21940 0.85118 0.75512 0.79745 0.78945 1.18479 1.19330 1.18316 1.21186 0.96211 0.94883 1.00338 1.19618 0.87513 0.99581 1.05548 1.19772 0.82779 0.93385 1.12974 1.83843 1.14647 1.33257 1.77495 0.90953 0.91034 0.84469 0.80201 0.87216 0.89545 0.85126 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.57 113.37 1.20 1.66 15 2 O -0.36 -10.33 10.58 -56.03 -0.59 -10.92 15 3 C 0.56 19.12 7.94 70.06 0.56 19.68 15 4 O -0.50 -17.60 16.62 19.60 0.33 -17.28 15 5 C -0.05 -1.90 7.10 23.96 0.17 -1.73 15 6 C -0.11 -4.33 10.81 23.83 0.26 -4.07 15 7 C -0.12 -5.57 6.37 -20.24 -0.13 -5.69 15 8 C -0.22 -10.79 9.86 23.00 0.23 -10.56 15 9 C 0.07 3.85 5.56 -21.29 -0.12 3.73 15 10 C -0.49 -24.71 9.04 23.44 0.21 -24.50 15 11 H 0.08 4.03 7.91 -2.91 -0.02 4.01 15 12 C 0.04 1.78 5.12 85.23 0.44 2.22 15 13 N -0.82 -39.87 11.01 21.82 0.24 -39.63 15 14 Si 0.99 35.59 29.60 68.60 2.03 37.62 15 15 H -0.26 -9.06 7.11 99.48 0.71 -8.36 15 16 H -0.27 -9.28 7.11 99.48 0.71 -8.57 15 17 H -0.26 -9.23 7.11 99.48 0.71 -8.52 15 18 C -0.11 -5.30 8.60 22.48 0.19 -5.10 15 19 C -0.10 -4.75 9.98 22.08 0.22 -4.53 15 20 C -0.04 -1.97 7.42 23.29 0.17 -1.80 15 21 O -0.19 -8.20 10.59 -11.66 -0.12 -8.32 15 22 H 0.07 1.21 8.14 -2.39 -0.02 1.19 15 23 H 0.07 1.21 8.14 -2.39 -0.02 1.19 15 24 H 0.14 1.50 8.14 -2.39 -0.02 1.48 15 25 H 0.18 6.13 8.06 -2.91 -0.02 6.11 15 26 H 0.11 5.06 8.06 -2.91 -0.02 5.04 15 27 H 0.29 12.75 8.30 -92.70 -0.77 11.98 15 28 H 0.13 6.46 6.19 -2.91 -0.02 6.45 15 29 H 0.13 5.17 8.06 -2.91 -0.02 5.15 15 Total: -1.00 -58.54 269.06 6.46 -52.08 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 1.18 Total: 17.14 kcal Atomic # 6 Polarization: -34.09 SS G_CDS: 3.40 Total: -30.70 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.24 Total: -39.63 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -0.39 Total: -36.52 kcal Atomic # 14 Polarization: 35.59 SS G_CDS: 2.03 Total: 37.62 kcal Total: -58.54 6.46 -52.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108326386.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.855 kcal (2) G-P(sol) polarization free energy of solvation -58.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds