Wall clock time and date at job start Mon Mar 30 2020 05:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38407 * 119.53978 * 2 1 4 4 C 1.38746 * 119.39754 * 179.97438 * 3 2 1 5 5 C 1.38424 * 118.52280 * 0.02562 * 4 3 2 6 6 C 1.39510 * 119.05570 * 359.97438 * 5 4 3 7 7 C 1.47803 * 119.74911 * 179.97438 * 6 5 4 8 8 N 1.29828 * 125.06413 * 180.30255 * 7 6 5 9 9 C 1.32678 * 116.03159 * 180.20318 * 8 7 6 10 10 C 1.41178 * 122.77314 * 179.75868 * 9 8 7 11 11 H 1.07998 * 119.99938 * 186.37065 * 10 9 8 12 12 C 1.39672 * 120.00175 * 6.37700 * 10 9 8 13 13 N 1.31037 * 119.99942 * 6.76381 * 12 10 9 14 14 Si 1.86797 * 120.00312 * 186.76948 * 12 10 9 15 15 H 1.48498 * 109.47154 * 265.01609 * 14 12 10 16 16 H 1.48502 * 109.47094 * 25.01899 * 14 12 10 17 17 H 1.48502 * 109.47323 * 145.01365 * 14 12 10 18 18 C 1.38045 * 114.45326 * 359.48631 * 9 8 7 19 19 S 1.70998 * 108.87244 * 0.27027 * 18 9 8 20 20 N 1.31637 * 119.54309 * 180.24342 * 2 1 3 21 21 H 1.09003 * 109.47239 * 89.99571 * 1 2 3 22 22 H 1.08998 * 109.46881 * 209.99523 * 1 2 3 23 23 H 1.08993 * 109.47230 * 329.99286 * 1 2 3 24 24 H 1.07997 * 120.29995 * 0.02562 * 3 2 1 25 25 H 1.07997 * 120.74032 * 179.97438 * 4 3 2 26 26 H 1.08007 * 120.47550 * 179.97438 * 5 4 3 27 27 H 0.97002 * 120.00195 * 180.02562 * 13 12 10 28 28 H 1.07996 * 125.56224 * 180.27497 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1894 1.2042 0.0000 4 6 3.5769 1.2007 0.0005 5 6 4.2348 -0.0171 0.0005 6 6 3.4839 -1.1929 0.0005 7 6 4.1707 -2.5017 -0.0001 8 7 3.5763 -3.6559 -0.0058 9 6 4.3695 -4.7194 -0.0010 10 6 3.8749 -6.0418 -0.0011 11 1 4.5559 -6.8730 0.1066 12 6 2.5049 -6.2749 -0.1407 13 7 1.6944 -5.2795 -0.4039 14 14 1.8280 -8.0057 0.0479 15 1 1.7126 -8.6406 -1.2896 16 1 2.7454 -8.8061 0.8983 17 1 0.4879 -7.9465 0.6850 18 6 5.7185 -4.4262 -0.0019 19 16 5.9152 -2.7276 -0.0015 20 7 2.1561 -1.1452 -0.0049 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 1.6468 2.1379 0.0004 25 1 4.1312 2.1276 0.0001 26 1 5.3142 -0.0566 0.0005 27 1 0.7428 -5.4414 -0.5005 28 1 6.5189 -5.1512 -0.0028 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110457539.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:53 Heat of formation + Delta-G solvation = 49.074818 kcal Electronic energy + Delta-G solvation = -14631.906385 eV Core-core repulsion = 12159.441242 eV Total energy + Delta-G solvation = -2472.465143 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.12246 -39.61429 -35.28705 -34.10321 -33.43801 -30.94594 -28.70678 -27.64440 -25.96571 -23.29436 -22.84029 -20.86947 -19.39979 -17.72321 -17.09231 -17.05143 -16.85256 -16.11834 -15.65330 -15.11077 -14.64200 -14.40159 -13.93820 -13.59131 -13.47032 -13.28485 -13.01397 -12.90775 -12.78197 -12.57335 -12.26529 -11.62745 -11.24714 -10.82217 -10.31120 -10.25818 -9.97683 -9.76012 -9.06692 -8.46600 -6.42225 -0.42078 0.38890 0.78238 0.86168 1.34888 1.40140 1.51439 1.63552 2.21787 2.33079 2.94934 3.23627 3.47643 3.59507 3.93695 4.18045 4.21055 4.49407 4.67176 4.77707 4.80793 4.83744 5.02897 5.18970 5.22352 5.23138 5.31351 5.44468 5.83167 6.12407 6.51096 6.83115 7.16788 7.66787 8.42624 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.023438 B = 0.007914 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.363899 B = 3537.252568 C = 4708.108876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.104 3.896 3 C -0.160 4.160 4 C -0.060 4.060 5 C -0.166 4.166 6 C 0.176 3.824 7 C 0.058 3.942 8 N -0.410 5.410 9 C 0.189 3.811 10 C -0.473 4.473 11 H 0.088 0.912 12 C 0.024 3.976 13 N -0.779 5.779 14 Si 0.993 3.007 15 H -0.260 1.260 16 H -0.255 1.255 17 H -0.268 1.268 18 C -0.478 4.478 19 S 0.079 5.921 20 N -0.495 5.495 21 H 0.084 0.916 22 H 0.053 0.947 23 H 0.111 0.889 24 H 0.181 0.819 25 H 0.187 0.813 26 H 0.148 0.852 27 H 0.280 0.720 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.937 13.384 0.621 13.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.037 4.037 3 C -0.180 4.180 4 C -0.086 4.086 5 C -0.188 4.188 6 C 0.038 3.962 7 C -0.221 4.221 8 N -0.126 5.126 9 C 0.065 3.935 10 C -0.507 4.507 11 H 0.106 0.894 12 C -0.196 4.196 13 N -0.402 5.402 14 Si 0.812 3.188 15 H -0.185 1.185 16 H -0.179 1.179 17 H -0.192 1.192 18 C -0.618 4.618 19 S 0.328 5.672 20 N -0.206 5.206 21 H 0.102 0.898 22 H 0.072 0.928 23 H 0.130 0.870 24 H 0.199 0.801 25 H 0.204 0.796 26 H 0.166 0.834 27 H 0.090 0.910 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.332 13.223 0.559 13.301 hybrid contribution 0.055 -1.532 -0.007 1.533 sum -1.277 11.691 0.552 11.773 Atomic orbital electron populations 1.20778 0.87154 1.03921 1.03664 1.22047 0.98618 0.88197 0.94790 1.22507 0.95264 0.99500 1.00727 1.21963 0.94602 0.98062 0.93929 1.22213 1.01721 0.92217 1.02646 1.18938 0.89381 0.89644 0.98261 1.26343 0.93202 0.95486 1.07105 1.67398 1.36057 0.97177 1.11926 1.18432 0.87215 0.93592 0.94283 1.19333 0.93798 0.90951 1.46608 0.89406 1.26987 0.96875 1.03537 0.92175 1.70260 1.04905 1.34267 1.30805 0.85052 0.78040 0.76113 0.79567 1.18461 1.17882 1.19246 1.25774 0.99546 0.98243 1.38210 1.81728 1.07504 1.02419 1.75529 1.67556 1.09290 1.31648 1.12127 0.89787 0.92823 0.87013 0.80142 0.79611 0.83421 0.91025 0.83372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.45 10.17 71.24 0.72 -1.72 15 2 C 0.10 3.34 6.78 42.63 0.29 3.63 15 3 C -0.16 -3.61 9.74 22.43 0.22 -3.39 15 4 C -0.06 -1.35 10.16 22.44 0.23 -1.12 15 5 C -0.17 -5.26 9.63 22.62 0.22 -5.04 15 6 C 0.18 7.74 6.75 41.83 0.28 8.02 15 7 C 0.06 2.99 7.37 87.52 0.64 3.63 15 8 N -0.41 -24.81 8.46 -182.90 -1.55 -26.36 15 9 C 0.19 11.46 6.42 39.69 0.25 11.71 15 10 C -0.47 -28.05 9.22 23.34 0.22 -27.84 15 11 H 0.09 4.90 7.85 -2.91 -0.02 4.88 15 12 C 0.02 1.32 5.48 85.16 0.47 1.79 15 13 N -0.78 -46.11 11.77 21.79 0.26 -45.85 15 14 Si 0.99 41.40 29.56 68.60 2.03 43.43 15 15 H -0.26 -10.30 7.11 99.48 0.71 -9.59 15 16 H -0.26 -10.23 7.11 99.48 0.71 -9.52 15 17 H -0.27 -10.69 7.11 99.48 0.71 -9.98 15 18 C -0.48 -25.62 10.99 67.77 0.75 -24.88 15 19 S 0.08 3.52 22.04 -56.49 -1.25 2.28 15 20 N -0.49 -22.11 10.16 -173.21 -1.76 -23.87 15 21 H 0.08 1.93 8.14 -2.39 -0.02 1.91 15 22 H 0.05 1.60 8.14 -2.39 -0.02 1.58 15 23 H 0.11 1.79 8.08 -2.39 -0.02 1.77 15 24 H 0.18 2.27 8.06 -2.91 -0.02 2.25 15 25 H 0.19 2.25 8.06 -2.91 -0.02 2.22 15 26 H 0.15 4.13 7.25 -2.91 -0.02 4.11 15 27 H 0.28 15.06 8.30 -92.71 -0.77 14.29 15 28 H 0.15 7.45 8.06 -2.91 -0.02 7.43 15 Total: -1.00 -77.42 267.96 3.20 -74.22 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 1.18 Total: 11.34 kcal Atomic # 6 Polarization: -39.49 SS G_CDS: 4.29 Total: -35.20 kcal Atomic # 7 Polarization: -93.02 SS G_CDS: -3.05 Total: -96.08 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -1.25 Total: 2.28 kcal Total: -77.42 3.20 -74.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110457539.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.300 kcal (2) G-P(sol) polarization free energy of solvation -77.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds