Wall clock time and date at job start Mon Mar 30 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37976 * 120.50852 * 2 1 4 4 N 1.31917 * 120.90720 * 180.31719 * 3 2 1 5 5 C 1.31940 * 122.06870 * 359.71521 * 4 3 2 6 6 C 1.37937 * 120.90519 * 359.97438 * 5 4 3 7 7 C 1.39990 * 120.50504 * 179.73465 * 2 1 3 8 8 C 1.47813 * 120.93226 * 359.96582 * 7 2 1 9 9 N 1.29805 * 125.06590 * 312.85670 * 8 7 2 10 10 C 1.32696 * 116.03642 * 179.97438 * 9 8 7 11 11 C 1.41165 * 122.78003 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00414 * 180.02562 * 11 10 9 13 13 C 1.39690 * 119.99925 * 0.02562 * 11 10 9 14 14 N 1.31024 * 119.99670 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00145 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46992 * 90.00182 * 15 13 11 17 17 H 1.48503 * 109.46974 * 210.00175 * 15 13 11 18 18 H 1.48498 * 109.47046 * 329.99757 * 15 13 11 19 19 C 1.38038 * 114.44963 * 359.97438 * 10 9 8 20 20 S 1.71003 * 108.87167 * 359.72964 * 19 10 9 21 21 H 1.09009 * 109.46758 * 264.89907 * 1 2 3 22 22 H 1.08999 * 109.47618 * 24.89835 * 1 2 3 23 23 H 1.09003 * 109.47331 * 144.90386 * 1 2 3 24 24 H 1.08000 * 119.54478 * 0.02562 * 3 2 1 25 25 H 1.07997 * 119.54761 * 179.97438 * 5 4 3 26 26 H 1.08003 * 120.49918 * 180.02562 * 6 5 4 27 27 H 0.96999 * 119.99955 * 180.02562 * 14 13 11 28 28 H 1.07997 * 125.56797 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2074 1.1887 0.0000 4 7 3.5265 1.1979 -0.0063 5 6 4.2348 0.0848 -0.0072 6 6 3.6166 -1.1483 -0.0011 7 6 2.2175 -1.2061 0.0056 8 6 1.5108 -2.5043 0.0124 9 7 0.5200 -2.8100 0.7932 10 6 0.0174 -4.0293 0.6465 11 6 -1.0605 -4.5100 1.4210 12 1 -1.4340 -5.5111 1.2641 13 6 -1.6439 -3.6908 2.3905 14 7 -1.1910 -2.4761 2.5804 15 14 -3.0697 -4.3271 3.4160 16 1 -2.5449 -4.9814 4.6414 17 1 -3.9493 -3.1933 3.7982 18 1 -3.8485 -5.3124 2.6235 19 6 0.6356 -4.7888 -0.3263 20 16 1.8812 -3.8621 -1.0431 21 1 -0.3633 -0.0914 1.0237 22 1 -0.3634 0.9321 -0.4326 23 1 -0.3634 -0.8408 -0.5909 24 1 1.6683 2.1245 0.0004 25 1 5.3134 0.1398 -0.0129 26 1 4.2029 -2.0554 -0.0015 27 1 -1.5959 -1.9073 3.2539 28 1 0.3724 -5.8013 -0.5945 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122223138.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:10 Heat of formation + Delta-G solvation = 66.332954 kcal Electronic energy + Delta-G solvation = -14899.513232 eV Core-core repulsion = 12427.796459 eV Total energy + Delta-G solvation = -2471.716774 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.81482 -37.83395 -33.77151 -32.86632 -31.81449 -29.00177 -26.91917 -25.73400 -24.33812 -22.10846 -21.19914 -19.05894 -17.73059 -16.41577 -15.91835 -15.27026 -14.88477 -14.70445 -13.89925 -13.62775 -13.06438 -12.78587 -12.74676 -12.12379 -11.83271 -11.74263 -11.63829 -11.28384 -11.09470 -10.81048 -10.53050 -9.80360 -9.56150 -9.21113 -9.20228 -8.54939 -8.17408 -8.04478 -7.42526 -6.62222 -4.46062 1.24451 1.48474 2.26637 2.80472 3.00966 3.05805 3.09193 3.51426 3.93951 4.08870 4.27556 4.74070 4.90391 5.20429 5.30515 5.38354 5.45673 5.80463 6.01164 6.09488 6.22668 6.35063 6.63593 6.72700 6.88153 6.97385 7.07538 7.14291 7.35666 8.09285 8.26428 8.43037 8.78424 9.44740 10.24987 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.026589 B = 0.008003 C = 0.006559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.833153 B = 3498.035540 C = 4267.782976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.094 4.094 3 C 0.089 3.911 4 N -0.489 5.489 5 C 0.083 3.917 6 C -0.154 4.154 7 C 0.048 3.952 8 C 0.065 3.935 9 N -0.371 5.371 10 C 0.224 3.776 11 C -0.430 4.430 12 H 0.085 0.915 13 C 0.073 3.927 14 N -0.749 5.749 15 Si 0.911 3.089 16 H -0.270 1.270 17 H -0.276 1.276 18 H -0.262 1.262 19 C -0.449 4.449 20 S -0.004 6.004 21 H 0.092 0.908 22 H 0.054 0.946 23 H 0.069 0.931 24 H 0.153 0.847 25 H 0.153 0.847 26 H 0.135 0.865 27 H 0.274 0.726 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.890 4.318 -2.832 6.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.099 4.099 3 C -0.068 4.068 4 N -0.198 5.198 5 C -0.073 4.073 6 C -0.176 4.176 7 C 0.036 3.964 8 C -0.214 4.214 9 N -0.086 5.086 10 C 0.100 3.900 11 C -0.464 4.464 12 H 0.103 0.897 13 C -0.150 4.150 14 N -0.372 5.372 15 Si 0.736 3.264 16 H -0.195 1.195 17 H -0.201 1.201 18 H -0.186 1.186 19 C -0.589 4.589 20 S 0.246 5.754 21 H 0.111 0.889 22 H 0.073 0.927 23 H 0.088 0.912 24 H 0.171 0.829 25 H 0.171 0.829 26 H 0.153 0.847 27 H 0.085 0.915 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.763 5.450 -3.092 7.871 hybrid contribution -1.806 -1.712 1.043 2.698 sum 2.957 3.738 -2.049 5.188 Atomic orbital electron populations 1.20673 0.89292 1.01355 1.04523 1.21094 0.98280 0.92452 0.98027 1.22500 0.89735 0.97085 0.97485 1.67533 1.08251 1.31669 1.12338 1.22463 0.99917 0.87382 0.97572 1.22240 0.93835 0.99832 1.01687 1.18259 0.92104 0.90123 0.95883 1.25617 0.99848 0.96405 0.99561 1.67517 1.05121 1.17135 1.18803 1.17895 0.94301 0.85480 0.92346 1.18959 1.11948 1.00482 1.15031 0.89713 1.25959 0.97671 0.94504 0.96851 1.70083 1.34933 1.06119 1.26067 0.86259 0.80683 0.79338 0.80137 1.19490 1.20146 1.18648 1.25400 1.12031 1.06318 1.15122 1.82641 1.38943 1.10656 1.43165 0.88906 0.92721 0.91189 0.82941 0.82947 0.84746 0.91498 0.84138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.84 9.06 36.00 0.33 -1.51 15 2 C -0.09 -1.71 5.93 -104.07 -0.62 -2.33 15 3 C 0.09 1.43 10.83 -17.61 -0.19 1.23 15 4 N -0.49 -7.96 10.34 -13.35 -0.14 -8.10 15 5 C 0.08 1.25 11.17 -17.62 -0.20 1.05 15 6 C -0.15 -2.57 9.86 -39.02 -0.38 -2.96 15 7 C 0.05 0.95 5.88 -104.65 -0.62 0.34 15 8 C 0.06 1.48 6.07 -14.49 -0.09 1.39 15 9 N -0.37 -9.63 7.39 -9.16 -0.07 -9.70 15 10 C 0.22 6.03 6.45 -86.46 -0.56 5.47 15 11 C -0.43 -11.46 9.23 -37.93 -0.35 -11.81 15 12 H 0.08 2.15 7.84 -52.49 -0.41 1.74 15 13 C 0.07 1.82 5.49 -17.35 -0.10 1.73 15 14 N -0.75 -19.23 11.69 55.54 0.65 -18.58 15 15 Si 0.91 18.58 29.56 -169.99 -5.02 13.55 15 16 H -0.27 -5.47 7.11 56.52 0.40 -5.06 15 17 H -0.28 -5.50 7.11 56.52 0.40 -5.10 15 18 H -0.26 -5.29 7.11 56.52 0.40 -4.89 15 19 C -0.45 -11.14 10.99 30.66 0.34 -10.80 15 20 S 0.00 -0.09 23.11 -107.50 -2.48 -2.58 15 21 H 0.09 1.87 8.14 -51.92 -0.42 1.45 15 22 H 0.05 0.79 8.06 -51.93 -0.42 0.37 15 23 H 0.07 1.45 7.14 -51.93 -0.37 1.07 15 24 H 0.15 1.98 8.06 -52.49 -0.42 1.56 15 25 H 0.15 1.74 8.06 -52.49 -0.42 1.32 15 26 H 0.13 2.03 8.06 -52.48 -0.42 1.61 15 27 H 0.27 6.44 8.30 -40.82 -0.34 6.10 15 28 H 0.14 3.32 8.06 -52.49 -0.42 2.89 15 LS Contribution 266.11 15.07 4.01 4.01 Total: -1.00 -28.57 266.11 -7.94 -36.51 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -2.45 Total: 3.08 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -2.43 Total: -18.20 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.44 Total: -36.38 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.55 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -2.48 Total: -2.58 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.57 -7.94 -36.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122223138.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.846 kcal (2) G-P(sol) polarization free energy of solvation -28.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds