Wall clock time and date at job start Mon Mar 30 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37976 * 120.50852 * 2 1 4 4 N 1.31917 * 120.90720 * 180.31719 * 3 2 1 5 5 C 1.31940 * 122.06870 * 359.71521 * 4 3 2 6 6 C 1.37937 * 120.90519 * 359.97438 * 5 4 3 7 7 C 1.39990 * 120.50504 * 179.73465 * 2 1 3 8 8 C 1.47813 * 120.93226 * 359.96582 * 7 2 1 9 9 N 1.29805 * 125.06590 * 312.85670 * 8 7 2 10 10 C 1.32696 * 116.03642 * 179.97438 * 9 8 7 11 11 C 1.41165 * 122.78003 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00414 * 180.02562 * 11 10 9 13 13 C 1.39690 * 119.99925 * 0.02562 * 11 10 9 14 14 N 1.31024 * 119.99670 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00145 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46992 * 90.00182 * 15 13 11 17 17 H 1.48503 * 109.46974 * 210.00175 * 15 13 11 18 18 H 1.48498 * 109.47046 * 329.99757 * 15 13 11 19 19 C 1.38038 * 114.44963 * 359.97438 * 10 9 8 20 20 S 1.71003 * 108.87167 * 359.72964 * 19 10 9 21 21 H 1.09009 * 109.46758 * 264.89907 * 1 2 3 22 22 H 1.08999 * 109.47618 * 24.89835 * 1 2 3 23 23 H 1.09003 * 109.47331 * 144.90386 * 1 2 3 24 24 H 1.08000 * 119.54478 * 0.02562 * 3 2 1 25 25 H 1.07997 * 119.54761 * 179.97438 * 5 4 3 26 26 H 1.08003 * 120.49918 * 180.02562 * 6 5 4 27 27 H 0.96999 * 119.99955 * 180.02562 * 14 13 11 28 28 H 1.07997 * 125.56797 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2074 1.1887 0.0000 4 7 3.5265 1.1979 -0.0063 5 6 4.2348 0.0848 -0.0072 6 6 3.6166 -1.1483 -0.0011 7 6 2.2175 -1.2061 0.0056 8 6 1.5108 -2.5043 0.0124 9 7 0.5200 -2.8100 0.7932 10 6 0.0174 -4.0293 0.6465 11 6 -1.0605 -4.5100 1.4210 12 1 -1.4340 -5.5111 1.2641 13 6 -1.6439 -3.6908 2.3905 14 7 -1.1910 -2.4761 2.5804 15 14 -3.0697 -4.3271 3.4160 16 1 -2.5449 -4.9814 4.6414 17 1 -3.9493 -3.1933 3.7982 18 1 -3.8485 -5.3124 2.6235 19 6 0.6356 -4.7888 -0.3263 20 16 1.8812 -3.8621 -1.0431 21 1 -0.3633 -0.0914 1.0237 22 1 -0.3634 0.9321 -0.4326 23 1 -0.3634 -0.8408 -0.5909 24 1 1.6683 2.1245 0.0004 25 1 5.3134 0.1398 -0.0129 26 1 4.2029 -2.0554 -0.0015 27 1 -1.5959 -1.9073 3.2539 28 1 0.3724 -5.8013 -0.5945 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122223138.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:10 Heat of formation + Delta-G solvation = 49.668897 kcal Electronic energy + Delta-G solvation = -14900.235840 eV Core-core repulsion = 12427.796459 eV Total energy + Delta-G solvation = -2472.439382 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.16845 -39.64402 -35.45346 -34.47727 -33.19665 -30.80161 -28.32507 -27.64938 -25.90993 -23.52538 -22.76272 -20.79245 -19.56465 -17.97062 -17.29231 -17.06457 -16.58042 -16.02234 -15.34421 -15.25686 -14.58083 -14.47844 -14.21176 -13.59550 -13.57110 -13.44008 -13.19351 -12.91465 -12.66364 -12.43907 -12.25967 -11.62200 -11.28251 -10.80450 -10.53509 -9.99866 -9.88790 -9.79626 -9.26253 -8.47893 -6.43016 -0.29004 0.20670 0.53102 1.08613 1.37510 1.40207 1.50953 1.65882 2.22064 2.33281 2.86051 3.33306 3.44513 3.59610 3.95702 3.95960 4.11961 4.52350 4.57127 4.74261 4.84103 4.87244 5.01511 5.07444 5.24907 5.31003 5.43580 5.49142 5.75488 6.12533 6.49494 6.84374 6.99608 7.58385 8.40509 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.026589 B = 0.008003 C = 0.006559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.833153 B = 3498.035540 C = 4267.782976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.109 4.109 3 C 0.099 3.901 4 N -0.493 5.493 5 C 0.096 3.904 6 C -0.154 4.154 7 C 0.013 3.987 8 C 0.068 3.932 9 N -0.407 5.407 10 C 0.195 3.805 11 C -0.469 4.469 12 H 0.083 0.917 13 C 0.032 3.968 14 N -0.775 5.775 15 Si 0.987 3.013 16 H -0.265 1.265 17 H -0.265 1.265 18 H -0.260 1.260 19 C -0.482 4.482 20 S 0.051 5.949 21 H 0.067 0.933 22 H 0.091 0.909 23 H 0.035 0.965 24 H 0.185 0.815 25 H 0.195 0.805 26 H 0.149 0.851 27 H 0.281 0.719 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.864 5.728 -2.779 8.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.058 4.058 4 N -0.202 5.202 5 C -0.061 4.061 6 C -0.176 4.176 7 C 0.001 3.999 8 C -0.211 4.211 9 N -0.122 5.122 10 C 0.071 3.929 11 C -0.503 4.503 12 H 0.101 0.899 13 C -0.189 4.189 14 N -0.398 5.398 15 Si 0.808 3.192 16 H -0.190 1.190 17 H -0.190 1.190 18 H -0.184 1.184 19 C -0.621 4.621 20 S 0.302 5.698 21 H 0.085 0.915 22 H 0.110 0.890 23 H 0.054 0.946 24 H 0.202 0.798 25 H 0.212 0.788 26 H 0.166 0.834 27 H 0.091 0.909 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.759 6.852 -3.065 9.461 hybrid contribution -1.958 -2.068 0.945 3.001 sum 3.800 4.784 -2.120 6.467 Atomic orbital electron populations 1.20505 0.89821 1.01788 1.02543 1.21184 0.98106 0.92955 0.99134 1.22922 0.89843 0.97316 0.95719 1.67679 1.08239 1.32069 1.12202 1.23102 1.01730 0.86148 0.95073 1.22456 0.92505 1.01434 1.01207 1.18499 0.93596 0.89215 0.98617 1.26262 0.98733 0.97818 0.98282 1.67521 1.06918 1.17039 1.20752 1.18303 0.95032 0.86460 0.93104 1.19288 1.13192 1.01078 1.16708 0.89915 1.26807 1.00101 0.94478 0.97468 1.70171 1.36071 1.07074 1.26504 0.85127 0.77068 0.78898 0.78121 1.18971 1.18963 1.18362 1.25646 1.13660 1.07013 1.15774 1.82186 1.36895 1.08975 1.41730 0.91475 0.89034 0.94561 0.79776 0.78798 0.83374 0.90887 0.84022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.26 9.06 71.23 0.65 -2.62 15 2 C -0.11 -3.86 5.93 -19.50 -0.12 -3.98 15 3 C 0.10 2.89 10.83 84.62 0.92 3.80 15 4 N -0.49 -14.30 10.34 -196.15 -2.03 -16.33 15 5 C 0.10 2.52 11.17 84.61 0.95 3.46 15 6 C -0.15 -4.81 9.86 22.63 0.22 -4.59 15 7 C 0.01 0.49 5.88 -19.88 -0.12 0.37 15 8 C 0.07 3.17 6.07 87.53 0.53 3.71 15 9 N -0.41 -21.88 7.39 -182.90 -1.35 -23.23 15 10 C 0.20 10.96 6.45 39.68 0.26 11.21 15 11 C -0.47 -26.00 9.23 23.34 0.22 -25.78 15 12 H 0.08 4.40 7.84 -2.91 -0.02 4.38 15 13 C 0.03 1.61 5.49 85.16 0.47 2.08 15 14 N -0.78 -40.88 11.69 21.79 0.25 -40.63 15 15 Si 0.99 38.60 29.56 68.60 2.03 40.63 15 16 H -0.26 -10.08 7.11 99.48 0.71 -9.37 15 17 H -0.27 -9.79 7.11 99.48 0.71 -9.08 15 18 H -0.26 -9.93 7.11 99.48 0.71 -9.22 15 19 C -0.48 -24.68 10.99 67.77 0.75 -23.94 15 20 S 0.05 2.19 23.11 -56.49 -1.31 0.89 15 21 H 0.07 2.79 8.14 -2.38 -0.02 2.77 15 22 H 0.09 2.54 8.06 -2.39 -0.02 2.52 15 23 H 0.04 1.54 7.14 -2.39 -0.02 1.52 15 24 H 0.19 4.09 8.06 -2.91 -0.02 4.07 15 25 H 0.20 3.44 8.06 -2.91 -0.02 3.42 15 26 H 0.15 4.12 8.06 -2.91 -0.02 4.10 15 27 H 0.28 13.43 8.30 -92.71 -0.77 12.67 15 28 H 0.14 6.96 8.06 -2.91 -0.02 6.94 15 Total: -1.00 -63.72 266.11 3.49 -60.23 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 1.18 Total: 14.71 kcal Atomic # 6 Polarization: -40.98 SS G_CDS: 4.71 Total: -36.27 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -3.13 Total: -80.19 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -1.31 Total: 0.89 kcal Total: -63.72 3.49 -60.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122223138.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.896 kcal (2) G-P(sol) polarization free energy of solvation -63.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds