Wall clock time and date at job start Mon Mar 30 2020 06:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33202 * 125.36490 * 2 1 4 4 H 0.96995 * 124.40279 * 359.97438 * 3 2 1 5 5 C 1.38558 * 111.20020 * 179.97438 * 3 2 1 6 6 C 1.38983 * 132.69489 * 180.02562 * 5 3 2 7 7 C 1.38041 * 119.99635 * 179.73399 * 6 5 3 8 8 C 1.38508 * 120.61431 * 0.52309 * 7 6 5 9 9 C 1.38082 * 120.16864 * 359.45642 * 8 7 6 10 10 N 1.48018 * 120.16357 * 180.29542 * 9 8 7 11 11 O 1.31699 * 120.00062 * 353.10855 * 10 9 8 12 12 O 1.31702 * 120.00015 * 173.09583 * 10 9 8 13 13 C 1.38952 * 119.68024 * 0.28116 * 9 8 7 14 14 C 1.41078 * 125.36835 * 179.97438 * 2 1 3 15 15 C 1.38499 * 127.16044 * 0.02699 * 14 2 1 16 16 H 1.08008 * 119.99795 * 123.13871 * 15 14 2 17 17 C 1.46685 * 120.00155 * 303.13049 * 15 14 2 18 18 N 1.29465 * 119.99816 * 172.68913 * 17 15 14 19 19 Si 1.86799 * 119.99956 * 352.68772 * 17 15 14 20 20 H 1.48498 * 109.47060 * 95.09215 * 19 17 15 21 21 H 1.48502 * 109.46862 * 215.08626 * 19 17 15 22 22 H 1.48497 * 109.47144 * 335.08810 * 19 17 15 23 23 H 1.09001 * 109.46721 * 93.94640 * 1 2 3 24 24 H 1.08995 * 109.46976 * 213.95024 * 1 2 3 25 25 H 1.09005 * 109.46797 * 333.94896 * 1 2 3 26 26 H 1.08000 * 120.00112 * 359.95514 * 6 5 3 27 27 H 1.08001 * 119.69177 * 180.27968 * 7 6 5 28 28 H 1.08007 * 119.91563 * 179.73771 * 8 7 6 29 29 H 0.97010 * 119.99922 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2780 1.0862 0.0000 4 1 1.9426 1.9963 -0.0004 5 6 3.6215 0.7472 0.0006 6 6 4.7852 1.5070 0.0013 7 6 6.0166 0.8832 0.0073 8 6 6.1073 -0.4989 0.0018 9 6 4.9615 -1.2694 0.0015 10 7 5.0585 -2.7464 0.0023 11 8 6.2316 -3.3294 -0.1337 12 8 3.9717 -3.4777 0.1391 13 6 3.7169 -0.6517 0.0009 14 6 2.3237 -1.1504 0.0005 15 6 1.9078 -2.4715 0.0006 16 1 2.2338 -3.1403 -0.7824 17 6 1.0250 -2.9625 1.0641 18 7 0.5224 -4.1533 0.9899 19 14 0.6259 -1.8696 2.5255 20 1 -0.6556 -1.1612 2.2785 21 1 0.5028 -2.7035 3.7482 22 1 1.7132 -0.8755 2.7118 23 1 -0.3633 -0.0707 -1.0253 24 1 -0.3633 -0.8524 0.5739 25 1 -0.3633 0.9233 0.4513 26 1 4.7261 2.5854 0.0007 27 1 6.9178 1.4785 0.0124 28 1 7.0767 -0.9751 0.0023 29 1 -0.0618 -4.4779 1.6931 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000145234763.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:25 Heat of formation + Delta-G solvation = 93.910774 kcal Electronic energy + Delta-G solvation = -17750.972372 eV Core-core repulsion = 14837.698591 eV Total energy + Delta-G solvation = -2913.273781 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.66347 -37.87812 -36.34671 -33.50426 -33.01693 -31.62206 -30.47567 -29.61768 -27.11745 -25.58390 -24.02586 -21.70186 -20.64271 -19.48805 -18.01658 -17.00681 -16.60881 -15.73052 -15.55402 -14.92667 -14.72188 -14.41446 -13.89676 -13.61226 -12.97295 -12.60252 -12.31601 -12.05777 -11.66593 -11.51057 -11.10965 -10.90787 -10.62139 -10.39258 -10.14334 -9.97855 -9.77739 -9.29082 -9.08528 -8.93421 -7.81105 -6.85962 -6.45087 -3.99789 0.31437 1.76449 2.02776 2.30916 2.99370 3.15495 3.23992 3.48481 3.74418 4.07240 4.15251 4.88758 5.03838 5.26778 5.35813 5.57936 5.66966 5.79595 5.95613 6.09081 6.24799 6.34845 6.52437 6.57354 6.61271 6.85762 7.05621 7.23563 7.43622 7.88479 8.00442 8.21608 8.65021 8.84950 9.00660 10.38161 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.020688 B = 0.012563 C = 0.008738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.140277 B = 2228.262509 C = 3203.579299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.070 4.070 3 N -0.561 5.561 4 H 0.402 0.598 5 C 0.080 3.920 6 C -0.090 4.090 7 C -0.127 4.127 8 C -0.103 4.103 9 C 0.055 3.945 10 N -0.031 5.031 11 O -0.274 6.274 12 O -0.073 6.073 13 C -0.089 4.089 14 C 0.040 3.960 15 C -0.427 4.427 16 H 0.101 0.899 17 C 0.093 3.907 18 N -0.802 5.802 19 Si 0.885 3.115 20 H -0.263 1.263 21 H -0.287 1.287 22 H -0.255 1.255 23 H 0.064 0.936 24 H 0.081 0.919 25 H 0.043 0.957 26 H 0.123 0.877 27 H 0.134 0.866 28 H 0.139 0.861 29 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.998 11.887 0.165 12.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.178 4.178 3 N -0.160 5.160 4 H 0.237 0.763 5 C -0.031 4.031 6 C -0.111 4.111 7 C -0.147 4.147 8 C -0.124 4.124 9 C -0.031 4.031 10 N 0.441 4.559 11 O -0.442 6.442 12 O -0.284 6.284 13 C -0.098 4.098 14 C 0.033 3.967 15 C -0.459 4.459 16 H 0.119 0.881 17 C -0.127 4.127 18 N -0.427 5.427 19 Si 0.711 3.289 20 H -0.190 1.190 21 H -0.213 1.213 22 H -0.179 1.179 23 H 0.083 0.917 24 H 0.099 0.901 25 H 0.062 0.938 26 H 0.141 0.859 27 H 0.152 0.848 28 H 0.156 0.844 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.927 12.333 0.217 12.485 hybrid contribution -0.186 0.470 0.837 0.978 sum 1.741 12.803 1.053 12.964 Atomic orbital electron populations 1.20292 0.88758 1.01537 1.02261 1.21117 0.92854 0.85742 1.18053 1.40489 1.03261 1.07960 1.64309 0.76279 1.17808 0.84885 0.92703 1.07721 1.20268 0.90114 0.98853 1.01876 1.20450 0.96823 0.92792 1.04663 1.20629 0.96939 0.93673 1.01202 1.19600 0.94570 0.76712 1.12225 1.51205 1.02469 1.04914 0.97298 1.96132 1.11925 1.75834 1.60318 1.96620 1.17347 1.66364 1.48019 1.19437 0.94413 0.92529 1.03393 1.17889 0.85573 0.92804 1.00387 1.19132 1.24068 0.92596 1.10078 0.88113 1.27166 0.92805 0.94417 0.98291 1.68917 1.23620 1.17418 1.32791 0.86841 0.79919 0.81127 0.81000 1.18958 1.21336 1.17856 0.91702 0.90065 0.93774 0.85937 0.84799 0.84365 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 9.46 36.01 0.34 -0.95 15 2 C -0.07 -1.44 6.08 -80.92 -0.49 -1.93 15 3 N -0.56 -9.78 5.86 -6.08 -0.04 -9.82 15 4 H 0.40 5.25 8.96 -40.82 -0.37 4.88 15 5 C 0.08 1.50 7.23 -83.81 -0.61 0.89 15 6 C -0.09 -1.33 10.07 -39.38 -0.40 -1.73 15 7 C -0.13 -1.85 10.01 -39.55 -0.40 -2.25 15 8 C -0.10 -1.86 9.58 -39.54 -0.38 -2.23 15 9 C 0.06 1.25 6.89 -79.74 -0.55 0.70 15 10 N -0.03 -0.78 4.98 34.06 0.17 -0.61 15 11 O -0.27 -6.80 19.19 -31.57 -0.61 -7.40 15 12 O -0.07 -2.02 14.50 -31.57 -0.46 -2.48 15 13 C -0.09 -2.04 6.15 -104.90 -0.65 -2.68 15 14 C 0.04 0.97 4.70 -104.73 -0.49 0.48 15 15 C -0.43 -11.48 6.69 -36.08 -0.24 -11.72 15 16 H 0.10 3.00 6.68 -52.48 -0.35 2.65 15 17 C 0.09 2.43 5.32 -15.14 -0.08 2.34 15 18 N -0.80 -21.50 13.88 55.99 0.78 -20.73 15 19 Si 0.88 20.06 24.33 -169.99 -4.14 15.93 15 20 H -0.26 -5.40 6.14 56.52 0.35 -5.06 15 21 H -0.29 -6.48 7.11 56.52 0.40 -6.08 15 22 H -0.26 -6.04 7.07 56.52 0.40 -5.64 15 23 H 0.06 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.08 1.63 3.65 -51.93 -0.19 1.44 15 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 15 26 H 0.12 1.34 8.06 -52.49 -0.42 0.92 15 27 H 0.13 1.41 8.06 -52.49 -0.42 0.99 15 28 H 0.14 2.28 7.60 -52.48 -0.40 1.88 15 29 H 0.28 6.88 8.27 -40.82 -0.34 6.54 15 LS Contribution 252.80 15.07 3.81 3.81 Total: -1.00 -30.37 252.80 -6.60 -36.97 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -2.19 Total: 3.39 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -3.94 Total: -19.07 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: 0.91 Total: -31.15 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -1.06 Total: -9.88 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.14 Total: 15.93 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.37 -6.60 -36.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145234763.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.882 kcal (2) G-P(sol) polarization free energy of solvation -30.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds