Wall clock time and date at job start Mon Mar 30 2020 06:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33202 * 125.36490 * 2 1 4 4 H 0.96995 * 124.40279 * 359.97438 * 3 2 1 5 5 C 1.38558 * 111.20020 * 179.97438 * 3 2 1 6 6 C 1.38983 * 132.69489 * 180.02562 * 5 3 2 7 7 C 1.38041 * 119.99635 * 179.73399 * 6 5 3 8 8 C 1.38508 * 120.61431 * 0.52309 * 7 6 5 9 9 C 1.38082 * 120.16864 * 359.45642 * 8 7 6 10 10 N 1.48018 * 120.16357 * 180.29542 * 9 8 7 11 11 O 1.31699 * 120.00062 * 353.10855 * 10 9 8 12 12 O 1.31702 * 120.00015 * 173.09583 * 10 9 8 13 13 C 1.38952 * 119.68024 * 0.28116 * 9 8 7 14 14 C 1.41078 * 125.36835 * 179.97438 * 2 1 3 15 15 C 1.38499 * 127.16044 * 0.02699 * 14 2 1 16 16 H 1.08008 * 119.99795 * 123.13871 * 15 14 2 17 17 C 1.46685 * 120.00155 * 303.13049 * 15 14 2 18 18 N 1.29465 * 119.99816 * 172.68913 * 17 15 14 19 19 Si 1.86799 * 119.99956 * 352.68772 * 17 15 14 20 20 H 1.48498 * 109.47060 * 95.09215 * 19 17 15 21 21 H 1.48502 * 109.46862 * 215.08626 * 19 17 15 22 22 H 1.48497 * 109.47144 * 335.08810 * 19 17 15 23 23 H 1.09001 * 109.46721 * 93.94640 * 1 2 3 24 24 H 1.08995 * 109.46976 * 213.95024 * 1 2 3 25 25 H 1.09005 * 109.46797 * 333.94896 * 1 2 3 26 26 H 1.08000 * 120.00112 * 359.95514 * 6 5 3 27 27 H 1.08001 * 119.69177 * 180.27968 * 7 6 5 28 28 H 1.08007 * 119.91563 * 179.73771 * 8 7 6 29 29 H 0.97010 * 119.99922 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2780 1.0862 0.0000 4 1 1.9426 1.9963 -0.0004 5 6 3.6215 0.7472 0.0006 6 6 4.7852 1.5070 0.0013 7 6 6.0166 0.8832 0.0073 8 6 6.1073 -0.4989 0.0018 9 6 4.9615 -1.2694 0.0015 10 7 5.0585 -2.7464 0.0023 11 8 6.2316 -3.3294 -0.1337 12 8 3.9717 -3.4777 0.1391 13 6 3.7169 -0.6517 0.0009 14 6 2.3237 -1.1504 0.0005 15 6 1.9078 -2.4715 0.0006 16 1 2.2338 -3.1403 -0.7824 17 6 1.0250 -2.9625 1.0641 18 7 0.5224 -4.1533 0.9899 19 14 0.6259 -1.8696 2.5255 20 1 -0.6556 -1.1612 2.2785 21 1 0.5028 -2.7035 3.7482 22 1 1.7132 -0.8755 2.7118 23 1 -0.3633 -0.0707 -1.0253 24 1 -0.3633 -0.8524 0.5739 25 1 -0.3633 0.9233 0.4513 26 1 4.7261 2.5854 0.0007 27 1 6.9178 1.4785 0.0124 28 1 7.0767 -0.9751 0.0023 29 1 -0.0618 -4.4779 1.6931 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000145234763.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:24 Heat of formation + Delta-G solvation = 71.732599 kcal Electronic energy + Delta-G solvation = -17751.934090 eV Core-core repulsion = 14837.698591 eV Total energy + Delta-G solvation = -2914.235499 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.21912 -39.57112 -37.88656 -35.30605 -34.81858 -33.22706 -31.97618 -31.24946 -28.64418 -27.31580 -25.71903 -23.23220 -22.11953 -21.22980 -19.64110 -18.75701 -18.34290 -17.24734 -17.06508 -16.62419 -16.47811 -15.79360 -15.51321 -15.07188 -14.76021 -14.24066 -13.70810 -13.49141 -13.34228 -12.96792 -12.57429 -12.52512 -12.38945 -12.08020 -11.91242 -11.80579 -11.58374 -11.18304 -10.77755 -10.57991 -9.29484 -8.62918 -8.18382 -5.89253 -1.50600 0.28026 0.51021 0.70744 1.21500 1.32574 1.43817 1.80409 2.24008 2.29203 2.64321 3.04789 3.73193 3.84732 4.12266 4.15986 4.23512 4.35089 4.47778 4.71924 4.81076 4.91067 5.13100 5.17254 5.19658 5.29422 5.39359 5.64864 5.73917 6.17622 6.22346 6.62252 6.86900 7.02725 7.10600 8.59062 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.020688 B = 0.012563 C = 0.008738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.140277 B = 2228.262509 C = 3203.579299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.004 3.996 3 N -0.540 5.540 4 H 0.433 0.567 5 C 0.064 3.936 6 C -0.029 4.029 7 C -0.124 4.124 8 C -0.065 4.065 9 C -0.003 4.003 10 N -0.018 5.018 11 O -0.289 6.289 12 O -0.191 6.191 13 C -0.138 4.138 14 C -0.026 4.026 15 C -0.441 4.441 16 H 0.037 0.963 17 C 0.045 3.955 18 N -0.861 5.861 19 Si 0.939 3.061 20 H -0.217 1.217 21 H -0.293 1.293 22 H -0.267 1.267 23 H 0.085 0.915 24 H 0.063 0.937 25 H 0.095 0.905 26 H 0.189 0.811 27 H 0.196 0.804 28 H 0.152 0.848 29 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.659 19.344 0.684 19.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 N -0.143 5.143 4 H 0.274 0.726 5 C -0.045 4.045 6 C -0.049 4.049 7 C -0.144 4.144 8 C -0.085 4.085 9 C -0.092 4.092 10 N 0.430 4.570 11 O -0.456 6.456 12 O -0.372 6.372 13 C -0.147 4.147 14 C -0.033 4.033 15 C -0.476 4.476 16 H 0.055 0.945 17 C -0.168 4.168 18 N -0.492 5.492 19 Si 0.762 3.238 20 H -0.141 1.141 21 H -0.220 1.220 22 H -0.191 1.191 23 H 0.103 0.897 24 H 0.081 0.919 25 H 0.114 0.886 26 H 0.206 0.794 27 H 0.213 0.787 28 H 0.170 0.830 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.518 19.718 0.731 19.891 hybrid contribution -0.142 -1.214 0.473 1.311 sum 2.377 18.504 1.204 18.694 Atomic orbital electron populations 1.20559 0.86388 1.03354 1.03898 1.21587 0.94282 0.85746 1.09249 1.40464 1.02694 1.08635 1.62497 0.72636 1.18194 0.86453 0.91163 1.08664 1.21119 0.88003 1.01759 0.94049 1.21222 0.99302 0.91010 1.02820 1.21290 0.95960 0.95476 0.95814 1.20190 0.96603 0.75038 1.17342 1.51613 1.01466 1.06473 0.97432 1.96026 1.11949 1.76982 1.60676 1.96642 1.17491 1.67471 1.55569 1.19584 0.93933 0.94898 1.06283 1.18053 0.87687 0.92925 1.04603 1.18744 1.25241 0.93151 1.10451 0.94492 1.27896 0.92992 0.95606 1.00258 1.69016 1.26322 1.19603 1.34250 0.86050 0.80965 0.79362 0.77410 1.14107 1.22050 1.19112 0.89690 0.91890 0.88630 0.79379 0.78670 0.83021 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 63. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.70 9.46 71.24 0.67 -2.03 15 2 C 0.00 0.17 6.08 43.05 0.26 0.43 15 3 N -0.54 -15.63 5.86 -173.15 -1.02 -16.64 15 4 H 0.43 7.66 8.96 -92.71 -0.83 6.83 15 5 C 0.06 2.08 7.23 38.74 0.28 2.36 15 6 C -0.03 -0.61 10.07 22.40 0.23 -0.38 15 7 C -0.12 -2.63 10.01 22.29 0.22 -2.41 15 8 C -0.06 -2.12 9.58 22.30 0.21 -1.91 15 9 C 0.00 -0.12 6.89 36.51 0.25 0.14 15 10 N -0.02 -1.00 4.98 -46.14 -0.23 -1.23 15 11 O -0.29 -15.49 19.19 3.52 0.07 -15.43 15 12 O -0.19 -12.25 14.50 3.51 0.05 -12.20 15 13 C -0.14 -6.30 6.15 -20.05 -0.12 -6.42 15 14 C -0.03 -1.30 4.70 -19.94 -0.09 -1.40 15 15 C -0.44 -26.22 6.69 24.54 0.16 -26.06 15 16 H 0.04 2.58 6.68 -2.91 -0.02 2.56 15 17 C 0.05 2.56 5.32 87.25 0.46 3.02 15 18 N -0.86 -51.21 13.88 23.24 0.32 -50.89 15 19 Si 0.94 42.40 24.33 68.60 1.67 44.07 15 20 H -0.22 -8.08 6.14 99.48 0.61 -7.47 15 21 H -0.29 -13.35 7.11 99.48 0.71 -12.64 15 22 H -0.27 -12.34 7.07 99.48 0.70 -11.63 15 23 H 0.08 2.48 8.14 -2.39 -0.02 2.47 15 24 H 0.06 2.35 3.65 -2.39 -0.01 2.34 15 25 H 0.10 2.13 8.14 -2.38 -0.02 2.11 15 26 H 0.19 1.76 8.06 -2.91 -0.02 1.74 15 27 H 0.20 2.03 8.06 -2.91 -0.02 2.01 15 28 H 0.15 4.55 7.60 -2.91 -0.02 4.53 15 29 H 0.28 15.29 8.27 -92.70 -0.77 14.53 15 Total: -1.00 -83.29 252.80 3.69 -79.60 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.29 Total: 7.38 kcal Atomic # 6 Polarization: -37.20 SS G_CDS: 2.54 Total: -34.66 kcal Atomic # 7 Polarization: -67.84 SS G_CDS: -0.92 Total: -68.76 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: 0.12 Total: -27.63 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.67 Total: 44.07 kcal Total: -83.29 3.69 -79.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145234763.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.331 kcal (2) G-P(sol) polarization free energy of solvation -83.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds