Wall clock time and date at job start Mon Mar 30 2020 06:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47206 * 2 1 4 4 C 1.36306 * 119.92281 * 100.00224 * 3 2 1 5 5 C 1.41264 * 119.84615 * 179.97438 * 4 3 2 6 6 C 1.40403 * 120.14303 * 180.02562 * 5 4 3 7 7 H 1.07997 * 119.99979 * 144.96950 * 6 5 4 8 8 C 1.46467 * 119.99750 * 324.96196 * 6 5 4 9 9 N 1.29547 * 120.00125 * 351.44238 * 8 6 5 10 10 Si 1.86802 * 119.99758 * 171.43765 * 8 6 5 11 11 H 1.48499 * 109.47073 * 90.00188 * 10 8 6 12 12 H 1.48503 * 109.47079 * 210.00348 * 10 8 6 13 13 H 1.48506 * 109.46929 * 330.00303 * 10 8 6 14 14 C 1.41289 * 119.71271 * 359.97438 * 5 4 3 15 15 N 1.48016 * 120.07719 * 179.97438 * 14 5 4 16 16 O 1.31703 * 120.00190 * 173.84373 * 15 14 5 17 17 O 1.31705 * 120.00055 * 353.85040 * 15 14 5 18 18 C 1.36274 * 119.84960 * 0.02562 * 14 5 4 19 19 C 1.40035 * 119.92662 * 279.72515 * 3 2 1 20 20 C 1.43205 * 119.85011 * 359.97438 * 19 3 2 21 21 N 3.55197 * 86.08898 * 287.30520 * 2 1 3 22 22 H 1.09002 * 109.47244 * 59.99673 * 1 2 3 23 23 H 1.08994 * 109.47381 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47017 * 299.99945 * 1 2 3 25 25 H 1.08997 * 109.46780 * 120.00230 * 2 1 3 26 26 H 1.09006 * 109.46779 * 239.99882 * 2 1 3 27 27 H 1.08002 * 120.07723 * 359.95304 * 4 3 2 28 28 H 0.97004 * 119.99679 * 185.14952 * 9 8 6 29 29 H 1.07995 * 119.92701 * 180.02562 * 18 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4525 1.9934 1.1634 5 6 2.9236 3.3252 1.1614 6 6 3.3583 3.9211 2.3561 7 1 4.1816 4.6200 2.3426 8 6 2.6953 3.5948 3.6207 9 7 1.6083 2.8901 3.6192 10 14 3.4171 4.1949 5.2358 11 1 2.8487 5.5260 5.5677 12 1 3.0840 3.2311 6.3153 13 1 4.8926 4.3046 5.1080 14 6 2.9564 4.0547 -0.0481 15 7 3.4479 5.4508 -0.0594 16 8 3.5926 6.0889 -1.2024 17 8 3.7408 6.0549 1.0737 18 6 2.5335 3.4703 -1.2043 19 6 2.0720 2.1478 -1.1962 20 6 1.6351 1.5377 -2.4159 21 7 1.2878 1.0541 -3.3833 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 2.4249 1.4304 2.0847 28 1 1.1284 2.7370 4.4482 29 1 2.5584 4.0265 -2.1296 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147345993.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:04 Heat of formation + Delta-G solvation = 42.801380 kcal Electronic energy + Delta-G solvation = -17087.614425 eV Core-core repulsion = 14172.124375 eV Total energy + Delta-G solvation = -2915.490050 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.18179 -37.12870 -35.78973 -34.63693 -33.46284 -32.88880 -30.81623 -29.39684 -26.87342 -25.01769 -23.01921 -22.23449 -20.36297 -18.35584 -18.27399 -16.73571 -16.02276 -15.31357 -14.90773 -14.61529 -14.50190 -13.54799 -13.42191 -13.13081 -13.04941 -12.62615 -12.30243 -12.18449 -11.91681 -11.74720 -11.69681 -11.18360 -11.03742 -10.76014 -10.51509 -10.43222 -10.02470 -9.78158 -9.42971 -9.27323 -8.40052 -8.20226 -7.82234 -5.34951 0.76192 1.68419 2.52726 2.63419 2.63884 2.72383 2.74188 3.33981 3.36383 3.44293 3.99610 4.67008 4.72952 5.26403 5.33311 5.57080 5.72187 5.90130 5.99160 6.06639 6.10446 6.18528 6.32358 6.50286 6.54268 6.64441 6.86191 7.06428 7.25223 7.30381 7.56162 7.77882 7.89505 8.18264 8.40749 9.01619 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.019248 B = 0.009570 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.326495 B = 2924.985925 C = 4236.865894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.082 4.082 3 C -0.026 4.026 4 C -0.119 4.119 5 C 0.094 3.906 6 C -0.310 4.310 7 H 0.133 0.867 8 C 0.054 3.946 9 N -0.706 5.706 10 Si 0.940 3.060 11 H -0.253 1.253 12 H -0.267 1.267 13 H -0.245 1.245 14 C -0.102 4.102 15 N 0.035 4.965 16 O -0.324 6.324 17 O -0.251 6.251 18 C 0.038 3.962 19 C -0.148 4.148 20 C 0.286 3.714 21 N -0.475 5.475 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.136 0.864 28 H 0.308 0.692 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.619 -5.270 5.756 7.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 C -0.028 4.028 4 C -0.138 4.138 5 C 0.088 3.912 6 C -0.336 4.336 7 H 0.150 0.850 8 C -0.179 4.179 9 N -0.326 5.326 10 Si 0.761 3.239 11 H -0.177 1.177 12 H -0.191 1.191 13 H -0.168 1.168 14 C -0.202 4.202 15 N 0.467 4.533 16 O -0.476 6.476 17 O -0.420 6.420 18 C 0.016 3.984 19 C -0.156 4.156 20 C -0.026 4.026 21 N -0.154 5.154 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.153 0.847 28 H 0.121 0.879 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.431 -6.454 4.256 7.862 hybrid contribution 0.290 0.873 0.919 1.301 sum -1.141 -5.581 5.175 7.696 Atomic orbital electron populations 1.21698 0.94972 1.00973 1.02411 1.20499 0.96137 0.93201 1.02127 1.19242 0.96703 0.95015 0.91856 1.20873 1.02879 0.93363 0.96733 1.17289 0.91784 0.91612 0.90484 1.22493 1.08477 1.13673 0.88919 0.84986 1.28058 0.94381 0.92215 1.03198 1.69062 1.10452 1.19898 1.33171 0.85707 0.81743 0.80086 0.76402 1.17730 1.19127 1.16780 1.19614 1.22169 0.81193 0.97175 1.49837 0.98484 1.03515 1.01430 1.96123 1.67086 1.69055 1.15330 1.96075 1.58568 1.71410 1.15970 1.20129 0.89303 0.92321 0.96695 1.15049 1.18754 0.94176 0.87577 1.25654 0.91958 0.92591 0.92353 1.81123 1.13115 1.09853 1.11287 0.93044 0.93038 0.91908 0.90902 0.91934 0.84681 0.87853 0.85256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.84 37.16 0.37 -1.70 15 2 C -0.08 -1.25 5.54 -27.88 -0.15 -1.41 15 3 C -0.03 -0.47 5.13 -104.64 -0.54 -1.00 15 4 C -0.12 -2.33 8.24 -39.13 -0.32 -2.65 15 5 C 0.09 2.06 5.52 -106.77 -0.59 1.47 15 6 C -0.31 -6.64 7.84 -35.45 -0.28 -6.92 15 7 H 0.13 2.93 5.88 -52.49 -0.31 2.62 15 8 C 0.05 1.02 5.42 -15.20 -0.08 0.94 15 9 N -0.71 -13.13 11.31 55.98 0.63 -12.50 15 10 Si 0.94 14.21 29.65 -169.99 -5.04 9.17 15 11 H -0.25 -3.95 7.11 56.52 0.40 -3.55 15 12 H -0.27 -3.78 7.11 56.52 0.40 -3.38 15 13 H -0.24 -3.74 7.11 56.52 0.40 -3.34 15 14 C -0.10 -2.36 6.89 -79.50 -0.55 -2.91 15 15 N 0.04 0.89 4.98 34.18 0.17 1.06 15 16 O -0.32 -8.46 19.14 -31.57 -0.60 -9.06 15 17 O -0.25 -6.44 16.24 -31.57 -0.51 -6.96 15 18 C 0.04 0.80 9.22 -39.60 -0.37 0.43 15 19 C -0.15 -2.86 5.75 -106.61 -0.61 -3.47 15 20 C 0.29 5.46 13.17 -22.47 -0.30 5.16 15 21 N -0.48 -9.44 18.54 41.83 0.78 -8.66 15 22 H 0.05 0.80 7.40 -51.93 -0.38 0.42 15 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 15 24 H 0.06 0.92 8.14 -51.93 -0.42 0.49 15 25 H 0.07 0.99 7.98 -51.93 -0.41 0.58 15 26 H 0.06 0.95 7.45 -51.93 -0.39 0.56 15 27 H 0.14 2.53 6.63 -52.49 -0.35 2.18 15 28 H 0.31 4.93 8.28 -40.82 -0.34 4.59 15 29 H 0.13 2.61 7.56 -52.49 -0.40 2.21 15 LS Contribution 271.19 15.07 4.09 4.09 Total: -1.00 -25.18 271.19 -6.13 -31.31 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -2.22 Total: 3.60 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -3.42 Total: -12.05 kcal Atomic # 7 Polarization: -21.68 SS G_CDS: 1.58 Total: -20.10 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -1.12 Total: -16.02 kcal Atomic # 14 Polarization: 14.21 SS G_CDS: -5.04 Total: 9.17 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -25.18 -6.13 -31.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147345993.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.110 kcal (2) G-P(sol) polarization free energy of solvation -25.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds