Wall clock time and date at job start Mon Mar 30 2020 06:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47206 * 2 1 4 4 C 1.36306 * 119.92281 * 100.00224 * 3 2 1 5 5 C 1.41264 * 119.84615 * 179.97438 * 4 3 2 6 6 C 1.40403 * 120.14303 * 180.02562 * 5 4 3 7 7 H 1.07997 * 119.99979 * 144.96950 * 6 5 4 8 8 C 1.46467 * 119.99750 * 324.96196 * 6 5 4 9 9 N 1.29547 * 120.00125 * 351.44238 * 8 6 5 10 10 Si 1.86802 * 119.99758 * 171.43765 * 8 6 5 11 11 H 1.48499 * 109.47073 * 90.00188 * 10 8 6 12 12 H 1.48503 * 109.47079 * 210.00348 * 10 8 6 13 13 H 1.48506 * 109.46929 * 330.00303 * 10 8 6 14 14 C 1.41289 * 119.71271 * 359.97438 * 5 4 3 15 15 N 1.48016 * 120.07719 * 179.97438 * 14 5 4 16 16 O 1.31703 * 120.00190 * 173.84373 * 15 14 5 17 17 O 1.31705 * 120.00055 * 353.85040 * 15 14 5 18 18 C 1.36274 * 119.84960 * 0.02562 * 14 5 4 19 19 C 1.40035 * 119.92662 * 279.72515 * 3 2 1 20 20 C 1.43205 * 119.85011 * 359.97438 * 19 3 2 21 21 N 3.55197 * 86.08898 * 287.30520 * 2 1 3 22 22 H 1.09002 * 109.47244 * 59.99673 * 1 2 3 23 23 H 1.08994 * 109.47381 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47017 * 299.99945 * 1 2 3 25 25 H 1.08997 * 109.46780 * 120.00230 * 2 1 3 26 26 H 1.09006 * 109.46779 * 239.99882 * 2 1 3 27 27 H 1.08002 * 120.07723 * 359.95304 * 4 3 2 28 28 H 0.97004 * 119.99679 * 185.14952 * 9 8 6 29 29 H 1.07995 * 119.92701 * 180.02562 * 18 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4525 1.9934 1.1634 5 6 2.9236 3.3252 1.1614 6 6 3.3583 3.9211 2.3561 7 1 4.1816 4.6200 2.3426 8 6 2.6953 3.5948 3.6207 9 7 1.6083 2.8901 3.6192 10 14 3.4171 4.1949 5.2358 11 1 2.8487 5.5260 5.5677 12 1 3.0840 3.2311 6.3153 13 1 4.8926 4.3046 5.1080 14 6 2.9564 4.0547 -0.0481 15 7 3.4479 5.4508 -0.0594 16 8 3.5926 6.0889 -1.2024 17 8 3.7408 6.0549 1.0737 18 6 2.5335 3.4703 -1.2043 19 6 2.0720 2.1478 -1.1962 20 6 1.6351 1.5377 -2.4159 21 7 1.2878 1.0541 -3.3833 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 2.4249 1.4304 2.0847 28 1 1.1284 2.7370 4.4482 29 1 2.5584 4.0265 -2.1296 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147345993.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:03 Heat of formation + Delta-G solvation = 30.966288 kcal Electronic energy + Delta-G solvation = -17088.127633 eV Core-core repulsion = 14172.124375 eV Total energy + Delta-G solvation = -2916.003259 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.81683 -38.80038 -37.42959 -36.21901 -34.89977 -34.63939 -32.47603 -30.87890 -28.54665 -26.66393 -24.49363 -23.79160 -21.88718 -20.03276 -19.89515 -18.47038 -17.55645 -16.91243 -16.42872 -16.25426 -16.06728 -15.05868 -14.86852 -14.52943 -14.48489 -14.10678 -13.83435 -13.70149 -13.45620 -13.19996 -13.06790 -12.59520 -12.52220 -11.98428 -11.90199 -11.73957 -11.59650 -11.46370 -11.27789 -11.07642 -10.01036 -9.85693 -9.34709 -7.05644 -1.09816 0.10742 0.84664 1.05756 1.33907 1.38062 1.55560 1.75213 1.94626 2.11344 2.42014 3.03771 3.07645 3.81646 3.93121 4.17634 4.42802 4.45011 4.52561 4.54449 4.75136 4.82004 4.94580 5.09674 5.13703 5.23732 5.39938 5.46562 5.61942 5.69228 5.91739 6.05213 6.22891 6.55831 6.63403 7.53101 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.019248 B = 0.009570 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.326495 B = 2924.985925 C = 4236.865894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.079 4.079 3 C -0.034 4.034 4 C -0.102 4.102 5 C 0.051 3.949 6 C -0.280 4.280 7 H 0.120 0.880 8 C 0.025 3.975 9 N -0.699 5.699 10 Si 1.001 2.999 11 H -0.261 1.261 12 H -0.238 1.238 13 H -0.251 1.251 14 C -0.098 4.098 15 N 0.034 4.966 16 O -0.403 6.403 17 O -0.315 6.315 18 C 0.018 3.982 19 C -0.111 4.111 20 C 0.295 3.705 21 N -0.474 5.474 22 H 0.034 0.966 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.096 0.904 26 H 0.066 0.934 27 H 0.151 0.849 28 H 0.330 0.670 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.765 -8.542 8.145 11.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 C -0.036 4.036 4 C -0.121 4.121 5 C 0.045 3.955 6 C -0.307 4.307 7 H 0.137 0.863 8 C -0.208 4.208 9 N -0.320 5.320 10 Si 0.817 3.183 11 H -0.186 1.186 12 H -0.160 1.160 13 H -0.174 1.174 14 C -0.204 4.204 15 N 0.438 4.562 16 O -0.534 6.534 17 O -0.466 6.466 18 C -0.005 4.005 19 C -0.119 4.119 20 C -0.017 4.017 21 N -0.152 5.152 22 H 0.053 0.947 23 H 0.095 0.905 24 H 0.079 0.921 25 H 0.115 0.885 26 H 0.085 0.915 27 H 0.168 0.832 28 H 0.145 0.855 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.526 -9.542 6.576 11.861 hybrid contribution 0.445 1.430 0.385 1.546 sum -2.081 -8.112 6.961 10.890 Atomic orbital electron populations 1.21686 0.94173 1.02419 1.01506 1.20566 0.96635 0.90838 1.03569 1.19547 0.96559 0.96780 0.90734 1.20974 1.01347 0.92082 0.97698 1.17640 0.94373 0.93088 0.90356 1.22935 1.06210 1.11085 0.90495 0.86274 1.28732 0.94667 0.92855 1.04546 1.68965 1.09830 1.17719 1.35438 0.84864 0.80517 0.79746 0.73132 1.18588 1.16046 1.17393 1.19990 1.21462 0.80624 0.98308 1.49866 1.01219 1.04347 1.00807 1.96056 1.71261 1.70321 1.15784 1.95990 1.61722 1.72658 1.16205 1.20198 0.90725 0.93185 0.96402 1.15217 1.15361 0.93108 0.88234 1.25464 0.91855 0.92328 0.92072 1.81144 1.12691 1.10156 1.11252 0.94667 0.90489 0.92081 0.88513 0.91508 0.83198 0.85533 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.84 71.98 0.71 -2.80 15 2 C -0.08 -2.08 5.54 29.85 0.17 -1.91 15 3 C -0.03 -1.14 5.13 -19.88 -0.10 -1.24 15 4 C -0.10 -3.72 8.24 22.56 0.19 -3.53 15 5 C 0.05 2.22 5.52 -21.26 -0.12 2.10 15 6 C -0.28 -11.85 7.84 24.94 0.20 -11.66 15 7 H 0.12 5.42 5.88 -2.91 -0.02 5.40 15 8 C 0.02 0.86 5.42 87.18 0.47 1.33 15 9 N -0.70 -23.32 11.31 23.20 0.26 -23.06 15 10 Si 1.00 26.39 29.65 68.60 2.03 28.42 15 11 H -0.26 -7.31 7.11 99.48 0.71 -6.60 15 12 H -0.24 -5.25 7.11 99.48 0.71 -4.54 15 13 H -0.25 -6.87 7.11 99.48 0.71 -6.16 15 14 C -0.10 -4.69 6.89 36.67 0.25 -4.44 15 15 N 0.03 1.86 4.98 -45.77 -0.23 1.63 15 16 O -0.40 -23.14 19.14 3.51 0.07 -23.07 15 17 O -0.31 -17.45 16.24 3.51 0.06 -17.40 15 18 C 0.02 0.75 9.22 22.26 0.21 0.96 15 19 C -0.11 -4.13 5.75 -21.15 -0.12 -4.25 15 20 C 0.30 10.69 13.17 88.33 1.16 11.86 15 21 N -0.47 -17.81 18.54 19.00 0.35 -17.46 15 22 H 0.03 0.98 7.40 -2.39 -0.02 0.96 15 23 H 0.08 1.54 8.14 -2.39 -0.02 1.52 15 24 H 0.06 1.54 8.14 -2.39 -0.02 1.52 15 25 H 0.10 2.14 7.98 -2.39 -0.02 2.12 15 26 H 0.07 1.74 7.45 -2.38 -0.02 1.72 15 27 H 0.15 5.01 6.63 -2.91 -0.02 5.00 15 28 H 0.33 8.98 8.28 -92.71 -0.77 8.21 15 29 H 0.13 5.43 7.56 -2.91 -0.02 5.40 15 Total: -1.00 -56.72 271.19 6.75 -49.96 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 1.20 Total: 14.57 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 3.01 Total: -13.59 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.39 Total: -38.88 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: 0.12 Total: -40.47 kcal Atomic # 14 Polarization: 26.39 SS G_CDS: 2.03 Total: 28.42 kcal Total: -56.72 6.75 -49.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147345993.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.929 kcal (2) G-P(sol) polarization free energy of solvation -56.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds