Wall clock time and date at job start Mon Mar 30 2020 06:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.46675 * 2 1 4 4 C 1.36310 * 119.92496 * 265.00178 * 3 2 1 5 5 C 1.41264 * 119.84722 * 179.97438 * 4 3 2 6 6 C 1.40397 * 120.13955 * 180.02562 * 5 4 3 7 7 H 1.07995 * 120.00651 * 25.16237 * 6 5 4 8 8 C 1.46473 * 119.99527 * 205.16857 * 6 5 4 9 9 N 1.29544 * 120.00353 * 12.67967 * 8 6 5 10 10 Si 1.86798 * 119.99746 * 192.68473 * 8 6 5 11 11 H 1.48497 * 109.47339 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47269 * 119.99912 * 10 8 6 13 13 H 1.48502 * 109.47066 * 239.99449 * 10 8 6 14 14 C 1.41287 * 119.71387 * 359.97438 * 5 4 3 15 15 C 1.36280 * 119.84829 * 359.97438 * 14 5 4 16 16 N 1.48015 * 119.92648 * 179.72116 * 15 14 5 17 17 O 1.31700 * 119.99696 * 0.02562 * 16 15 14 18 18 O 1.31693 * 119.99844 * 180.02562 * 16 15 14 19 19 C 1.40029 * 119.92469 * 84.97654 * 3 2 1 20 20 C 1.43202 * 119.85582 * 0.04011 * 19 3 2 21 21 N 3.55192 * 90.36146 * 74.31082 * 2 1 3 22 22 H 1.08996 * 109.47314 * 60.00435 * 1 2 3 23 23 H 1.09007 * 109.46671 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47060 * 299.99900 * 1 2 3 25 25 H 1.08991 * 109.47366 * 240.00315 * 2 1 3 26 26 H 1.08996 * 109.47314 * 119.99565 * 2 1 3 27 27 H 1.08006 * 120.07863 * 359.97438 * 4 3 2 28 28 H 0.96996 * 120.00282 * 179.97438 * 9 8 6 29 29 H 1.08001 * 120.07773 * 180.02562 * 14 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3559 2.0277 -1.1769 5 6 2.8260 3.3598 -1.1750 6 6 3.1606 3.9910 -2.3837 7 1 2.7072 3.6636 -3.3075 8 6 4.1249 5.0935 -2.3915 9 7 4.8496 5.3278 -1.3437 10 14 4.3095 6.1619 -3.9127 11 1 3.3745 5.6901 -4.9654 12 1 3.9967 7.5721 -3.5681 13 1 5.7045 6.0726 -4.4139 14 6 2.9569 4.0546 0.0483 15 6 2.6289 3.4366 1.2177 16 7 2.7713 4.1607 2.5008 17 8 3.2140 5.4010 2.5113 18 8 2.4552 3.5647 3.6318 19 6 2.1649 2.1149 1.2089 20 6 1.8233 1.4712 2.4417 21 7 1.5524 0.9605 3.4195 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5137 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 2.2532 1.4913 -2.1087 28 1 5.4884 6.0577 -1.3490 29 1 3.3154 5.0733 0.0565 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147521683.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:06 Heat of formation + Delta-G solvation = 48.467200 kcal Electronic energy + Delta-G solvation = -17064.895226 eV Core-core repulsion = 14149.650864 eV Total energy + Delta-G solvation = -2915.244362 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.32247 -37.53987 -35.70538 -34.56466 -33.54586 -33.25867 -31.15118 -29.13784 -26.42772 -25.80861 -23.56008 -21.67645 -20.53501 -18.15222 -18.10861 -17.21629 -16.51808 -15.74682 -15.16270 -14.87166 -14.04444 -13.79388 -13.28299 -13.10317 -12.91269 -12.29757 -12.21833 -11.99864 -11.73324 -11.60658 -11.46896 -11.24802 -10.91142 -10.84030 -10.69985 -10.49506 -10.33249 -10.00256 -9.93486 -9.91739 -8.56421 -8.14651 -7.65722 -5.13864 0.18251 1.81058 2.07801 2.36570 2.61177 2.65516 2.73317 3.32953 3.56055 3.72213 4.22176 4.80442 4.96781 5.17619 5.36553 5.69394 5.78650 5.94236 5.97827 6.07406 6.12431 6.17586 6.29821 6.38197 6.50730 6.69339 6.80048 7.04823 7.18743 7.30498 7.60561 7.70027 7.84954 7.98967 8.55981 9.20190 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.022072 B = 0.008443 C = 0.006296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.280248 B = 3315.687653 C = 4446.277819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C 0.019 3.981 4 C -0.212 4.212 5 C 0.103 3.897 6 C -0.393 4.393 7 H 0.106 0.894 8 C 0.060 3.940 9 N -0.726 5.726 10 Si 0.933 3.067 11 H -0.250 1.250 12 H -0.262 1.262 13 H -0.264 1.264 14 C -0.093 4.093 15 C 0.073 3.927 16 N -0.011 5.011 17 O -0.188 6.188 18 O -0.202 6.202 19 C -0.170 4.170 20 C 0.280 3.720 21 N -0.463 5.463 22 H 0.059 0.941 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.119 0.881 28 H 0.306 0.694 29 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.275 -1.232 -7.964 8.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C 0.016 3.984 4 C -0.232 4.232 5 C 0.099 3.901 6 C -0.418 4.418 7 H 0.124 0.876 8 C -0.171 4.171 9 N -0.345 5.345 10 Si 0.754 3.246 11 H -0.173 1.173 12 H -0.186 1.186 13 H -0.189 1.189 14 C -0.114 4.114 15 C -0.015 4.015 16 N 0.463 4.537 17 O -0.381 6.381 18 O -0.389 6.389 19 C -0.177 4.177 20 C -0.031 4.031 21 N -0.142 5.142 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.137 0.863 28 H 0.120 0.880 29 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.558 -2.192 -6.827 7.338 hybrid contribution 0.492 1.056 -0.389 1.228 sum -1.067 -1.137 -7.216 7.382 Atomic orbital electron populations 1.21702 0.94851 1.01164 1.02326 1.20546 0.96185 0.93054 1.02473 1.18932 0.94431 0.94337 0.90693 1.20735 1.11512 0.94665 0.96280 1.17530 0.90260 0.90674 0.91668 1.21302 1.16198 1.09281 0.95025 0.87596 1.27823 0.93560 0.96791 0.98948 1.69021 1.12128 1.23642 1.29677 0.85814 0.79994 0.79188 0.79600 1.17253 1.18592 1.18890 1.21419 0.98882 1.01983 0.89131 1.19932 1.09491 0.91558 0.80479 1.50819 0.95883 1.02040 1.04915 1.96195 1.48580 0.97285 1.96076 1.96237 1.55365 1.68720 1.18610 1.14619 1.22661 0.92411 0.88031 1.25266 0.92891 0.92816 0.92162 1.80992 1.12326 1.10990 1.09921 0.92222 0.92820 0.92783 0.90652 0.91623 0.86300 0.88030 0.82540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.89 37.16 0.37 -1.66 15 2 C -0.09 -1.33 5.56 -27.88 -0.15 -1.48 15 3 C 0.02 0.37 5.13 -104.64 -0.54 -0.17 15 4 C -0.21 -4.00 9.36 -39.13 -0.37 -4.37 15 5 C 0.10 2.16 5.62 -106.78 -0.60 1.56 15 6 C -0.39 -7.74 9.31 -35.45 -0.33 -8.07 15 7 H 0.11 1.88 7.96 -52.49 -0.42 1.46 15 8 C 0.06 1.12 5.40 -15.20 -0.08 1.04 15 9 N -0.73 -14.68 10.84 55.98 0.61 -14.07 15 10 Si 0.93 13.86 29.66 -169.99 -5.04 8.82 15 11 H -0.25 -3.63 7.11 56.52 0.40 -3.23 15 12 H -0.26 -3.93 7.11 56.52 0.40 -3.53 15 13 H -0.26 -3.92 7.11 56.52 0.40 -3.51 15 14 C -0.09 -2.08 8.23 -39.13 -0.32 -2.40 15 15 C 0.07 1.71 6.86 -79.96 -0.55 1.16 15 16 N -0.01 -0.27 4.98 33.95 0.17 -0.10 15 17 O -0.19 -4.59 19.12 -31.57 -0.60 -5.20 15 18 O -0.20 -5.15 16.85 -31.56 -0.53 -5.68 15 19 C -0.17 -3.73 5.75 -106.61 -0.61 -4.34 15 20 C 0.28 6.36 10.94 -22.47 -0.25 6.11 15 21 N -0.46 -10.83 18.23 41.84 0.76 -10.07 15 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 24 H 0.05 0.86 7.91 -51.93 -0.41 0.45 15 25 H 0.07 1.00 8.04 -51.93 -0.42 0.58 15 26 H 0.07 1.07 7.26 -51.93 -0.38 0.69 15 27 H 0.12 1.94 8.05 -52.48 -0.42 1.52 15 28 H 0.31 5.48 8.27 -40.82 -0.34 5.14 15 29 H 0.16 3.64 5.52 -52.49 -0.29 3.35 15 LS Contribution 272.35 15.07 4.10 4.10 Total: -1.00 -25.03 272.35 -6.28 -31.31 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -2.31 Total: 3.52 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -3.43 Total: -12.63 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 1.54 Total: -24.25 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -1.14 Total: -10.88 kcal Atomic # 14 Polarization: 13.86 SS G_CDS: -5.04 Total: 8.82 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -25.03 -6.28 -31.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147521683.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.775 kcal (2) G-P(sol) polarization free energy of solvation -25.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds