Wall clock time and date at job start Mon Mar 30 2020 06:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47165 * 2 1 4 4 C 1.41341 * 120.00075 * 95.58577 * 3 2 1 5 5 C 1.40383 * 120.22156 * 0.02562 * 4 3 2 6 6 H 1.07998 * 119.99927 * 332.86893 * 5 4 3 7 7 C 1.46533 * 120.00338 * 152.87499 * 5 4 3 8 8 N 1.29500 * 120.00443 * 166.82783 * 7 5 4 9 9 Si 1.86802 * 119.99794 * 346.82219 * 7 5 4 10 10 H 1.48504 * 109.46787 * 95.22234 * 9 7 5 11 11 H 1.48501 * 109.47423 * 215.22187 * 9 7 5 12 12 H 1.48493 * 109.47350 * 335.22615 * 9 7 5 13 13 C 1.41039 * 119.55697 * 180.02562 * 4 3 2 14 14 C 1.38908 * 119.54268 * 0.02562 * 13 4 3 15 15 C 1.43202 * 120.00851 * 179.97438 * 14 13 4 16 16 N 6.86736 * 109.41932 * 359.63818 * 2 1 3 17 17 C 1.40093 * 119.98152 * 359.97438 * 14 13 4 18 18 C 1.37535 * 119.99530 * 275.60895 * 3 2 1 19 19 N 1.48016 * 119.77107 * 359.97438 * 18 3 2 20 20 O 1.31692 * 120.00325 * 186.40196 * 19 18 3 21 21 O 1.31706 * 119.99549 * 6.40634 * 19 18 3 22 22 H 1.09003 * 109.47404 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47192 * 299.99702 * 1 2 3 24 24 H 1.08993 * 109.47600 * 60.00260 * 1 2 3 25 25 H 1.08995 * 109.47059 * 239.99703 * 2 1 3 26 26 H 1.09004 * 109.47106 * 119.99672 * 2 1 3 27 27 H 0.97006 * 120.00514 * 179.97438 * 8 7 5 28 28 H 1.08003 * 120.22475 * 179.97438 * 13 4 3 29 29 H 1.08006 * 119.77306 * 180.27259 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3802 2.0474 1.2182 5 6 2.2601 1.3504 2.4309 6 1 1.5351 0.5558 2.5275 7 6 3.1184 1.7009 3.5656 8 7 2.8461 1.2478 4.7478 9 14 4.6055 2.8014 3.3069 10 1 4.2393 4.2080 3.6114 11 1 5.7038 2.3695 4.2084 12 1 5.0556 2.7016 1.8954 13 6 2.8488 3.3776 1.2074 14 6 2.9616 4.0543 -0.0005 15 6 3.4358 5.4053 -0.0230 16 7 3.8132 6.4766 -0.0409 17 6 2.6114 3.4146 -1.1966 18 6 2.1517 2.1079 -1.1854 19 7 1.7860 1.4467 -2.4582 20 8 2.0162 2.0522 -3.6048 21 8 1.2302 0.2527 -2.4440 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.4145 1.4795 5.4990 28 1 3.1173 3.8670 2.1320 29 1 2.7046 3.9424 -2.1343 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147591861.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:24 Heat of formation + Delta-G solvation = 62.399432 kcal Electronic energy + Delta-G solvation = -17245.688787 eV Core-core repulsion = 14331.048572 eV Total energy + Delta-G solvation = -2914.640215 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.61798 -37.73374 -36.25330 -34.33088 -34.19997 -33.01124 -31.55612 -29.77760 -26.08508 -25.70851 -23.86106 -21.76338 -20.93300 -19.23302 -17.56336 -17.32323 -16.32328 -15.58608 -15.49604 -15.13930 -14.96216 -13.64231 -13.52788 -13.30825 -13.06934 -12.83760 -12.39483 -12.20802 -12.18169 -11.82921 -11.42408 -11.20641 -11.07737 -10.89694 -10.61403 -10.39983 -10.22623 -10.14166 -9.87670 -9.46257 -8.69266 -8.38155 -7.70282 -5.13287 0.04740 1.32494 1.84794 2.01637 2.62159 2.75702 2.81389 2.99373 3.24005 3.40261 3.89709 4.27328 4.58667 5.30764 5.40689 5.51590 5.69699 5.80389 5.94014 6.03702 6.13153 6.22269 6.36481 6.52811 6.57673 6.63019 6.80395 6.84493 6.96895 7.15789 7.46883 7.50375 7.76847 7.79856 7.94750 9.22457 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.018384 B = 0.010811 C = 0.007259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.718584 B = 2589.366176 C = 3856.613659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.091 4.091 3 C -0.080 4.080 4 C 0.077 3.923 5 C -0.393 4.393 6 H 0.112 0.888 7 C 0.079 3.921 8 N -0.741 5.741 9 Si 0.904 3.096 10 H -0.259 1.259 11 H -0.276 1.276 12 H -0.231 1.231 13 C -0.176 4.176 14 C 0.025 3.975 15 C 0.272 3.728 16 N -0.440 5.440 17 C -0.182 4.182 18 C 0.052 3.948 19 N -0.006 5.006 20 O -0.215 6.215 21 O -0.177 6.177 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.304 0.696 28 H 0.118 0.882 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.094 -1.537 -0.392 1.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.128 4.128 3 C -0.084 4.084 4 C 0.073 3.927 5 C -0.417 4.417 6 H 0.130 0.870 7 C -0.152 4.152 8 N -0.359 5.359 9 Si 0.728 3.272 10 H -0.185 1.185 11 H -0.203 1.203 12 H -0.154 1.154 13 C -0.198 4.198 14 C 0.020 3.980 15 C -0.043 4.043 16 N -0.116 5.116 17 C -0.205 4.205 18 C -0.035 4.035 19 N 0.466 4.534 20 O -0.400 6.400 21 O -0.370 6.370 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.109 0.891 26 H 0.098 0.902 27 H 0.116 0.884 28 H 0.135 0.865 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.843 0.340 0.379 0.985 hybrid contribution 0.370 -0.029 -0.211 0.427 sum 1.213 0.310 0.169 1.264 Atomic orbital electron populations 1.21583 0.94837 1.01227 1.01285 1.20847 0.96258 0.91754 1.03942 1.20039 1.02240 0.96612 0.89488 1.17107 0.93202 0.90751 0.91678 1.20910 1.15033 1.14665 0.91121 0.87002 1.27793 0.99469 0.94267 0.93707 1.68919 1.34719 1.31297 1.00977 0.86371 0.79354 0.79561 0.81907 1.18477 1.20277 1.15352 1.21249 1.08503 0.94826 0.95248 1.15267 1.03044 0.85789 0.93856 1.25855 0.92909 0.92781 0.92719 1.81140 1.10163 1.11860 1.08423 1.19856 1.09993 0.93114 0.97575 1.19664 1.10082 0.93755 0.79969 1.50636 0.96867 1.01357 1.04553 1.96206 1.61424 1.65965 1.16421 1.96121 1.43434 1.01598 1.95844 0.92763 0.92977 0.93019 0.89137 0.90167 0.88377 0.86504 0.84962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 9.36 37.16 0.35 -1.80 15 2 C -0.09 -1.61 4.83 -27.89 -0.13 -1.74 15 3 C -0.08 -1.56 5.21 -103.70 -0.54 -2.10 15 4 C 0.08 1.55 5.29 -106.85 -0.57 0.98 15 5 C -0.39 -8.14 8.93 -35.43 -0.32 -8.46 15 6 H 0.11 2.37 6.96 -52.49 -0.37 2.01 15 7 C 0.08 1.59 5.64 -15.19 -0.09 1.51 15 8 N -0.74 -15.28 13.89 55.98 0.78 -14.50 15 9 Si 0.90 16.43 24.48 -169.99 -4.16 12.27 15 10 H -0.26 -4.67 6.84 56.52 0.39 -4.28 15 11 H -0.28 -4.85 7.11 56.52 0.40 -4.45 15 12 H -0.23 -4.30 6.47 56.52 0.37 -3.93 15 13 C -0.18 -3.46 6.74 -38.27 -0.26 -3.71 15 14 C 0.02 0.47 5.72 -107.03 -0.61 -0.14 15 15 C 0.27 5.09 15.32 -22.47 -0.34 4.74 15 16 N -0.44 -8.54 18.54 41.83 0.78 -7.76 15 17 C -0.18 -3.47 9.30 -38.78 -0.36 -3.83 15 18 C 0.05 1.03 6.84 -80.10 -0.55 0.48 15 19 N -0.01 -0.12 4.98 33.89 0.17 0.05 15 20 O -0.22 -4.49 19.14 -31.56 -0.60 -5.09 15 21 O -0.18 -3.50 14.15 -31.57 -0.45 -3.95 15 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 24 H 0.05 0.88 6.80 -51.93 -0.35 0.53 15 25 H 0.09 1.61 5.61 -51.93 -0.29 1.32 15 26 H 0.08 1.39 6.50 -51.93 -0.34 1.06 15 27 H 0.30 5.55 8.27 -40.82 -0.34 5.21 15 28 H 0.12 2.24 4.12 -52.48 -0.22 2.03 15 29 H 0.13 2.39 7.57 -52.48 -0.40 1.99 15 LS Contribution 260.88 15.07 3.93 3.93 Total: -1.00 -21.91 260.88 -4.97 -26.87 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -1.99 Total: 2.25 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -3.42 Total: -14.07 kcal Atomic # 7 Polarization: -23.93 SS G_CDS: 1.72 Total: -22.21 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -1.05 Total: -9.04 kcal Atomic # 14 Polarization: 16.43 SS G_CDS: -4.16 Total: 12.27 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -21.91 -4.97 -26.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147591861.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.273 kcal (2) G-P(sol) polarization free energy of solvation -21.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds