Wall clock time and date at job start Mon Mar 30 2020 06:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47165 * 2 1 4 4 C 1.41341 * 120.00075 * 95.58577 * 3 2 1 5 5 C 1.40383 * 120.22156 * 0.02562 * 4 3 2 6 6 H 1.07998 * 119.99927 * 332.86893 * 5 4 3 7 7 C 1.46533 * 120.00338 * 152.87499 * 5 4 3 8 8 N 1.29500 * 120.00443 * 166.82783 * 7 5 4 9 9 Si 1.86802 * 119.99794 * 346.82219 * 7 5 4 10 10 H 1.48504 * 109.46787 * 95.22234 * 9 7 5 11 11 H 1.48501 * 109.47423 * 215.22187 * 9 7 5 12 12 H 1.48493 * 109.47350 * 335.22615 * 9 7 5 13 13 C 1.41039 * 119.55697 * 180.02562 * 4 3 2 14 14 C 1.38908 * 119.54268 * 0.02562 * 13 4 3 15 15 C 1.43202 * 120.00851 * 179.97438 * 14 13 4 16 16 N 6.86736 * 109.41932 * 359.63818 * 2 1 3 17 17 C 1.40093 * 119.98152 * 359.97438 * 14 13 4 18 18 C 1.37535 * 119.99530 * 275.60895 * 3 2 1 19 19 N 1.48016 * 119.77107 * 359.97438 * 18 3 2 20 20 O 1.31692 * 120.00325 * 186.40196 * 19 18 3 21 21 O 1.31706 * 119.99549 * 6.40634 * 19 18 3 22 22 H 1.09003 * 109.47404 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47192 * 299.99702 * 1 2 3 24 24 H 1.08993 * 109.47600 * 60.00260 * 1 2 3 25 25 H 1.08995 * 109.47059 * 239.99703 * 2 1 3 26 26 H 1.09004 * 109.47106 * 119.99672 * 2 1 3 27 27 H 0.97006 * 120.00514 * 179.97438 * 8 7 5 28 28 H 1.08003 * 120.22475 * 179.97438 * 13 4 3 29 29 H 1.08006 * 119.77306 * 180.27259 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3802 2.0474 1.2182 5 6 2.2601 1.3504 2.4309 6 1 1.5351 0.5558 2.5275 7 6 3.1184 1.7009 3.5656 8 7 2.8461 1.2478 4.7478 9 14 4.6055 2.8014 3.3069 10 1 4.2393 4.2080 3.6114 11 1 5.7038 2.3695 4.2084 12 1 5.0556 2.7016 1.8954 13 6 2.8488 3.3776 1.2074 14 6 2.9616 4.0543 -0.0005 15 6 3.4358 5.4053 -0.0230 16 7 3.8132 6.4766 -0.0409 17 6 2.6114 3.4146 -1.1966 18 6 2.1517 2.1079 -1.1854 19 7 1.7860 1.4467 -2.4582 20 8 2.0162 2.0522 -3.6048 21 8 1.2302 0.2527 -2.4440 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.4145 1.4795 5.4990 28 1 3.1173 3.8670 2.1320 29 1 2.7046 3.9424 -2.1343 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147591861.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:24 Heat of formation + Delta-G solvation = 53.468251 kcal Electronic energy + Delta-G solvation = -17246.076072 eV Core-core repulsion = 14331.048572 eV Total energy + Delta-G solvation = -2915.027500 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.18077 -39.31809 -37.78343 -35.88375 -35.74774 -34.53585 -33.12298 -31.26132 -27.64243 -27.27560 -25.34098 -23.32263 -22.40535 -20.81123 -19.15482 -18.87658 -17.88803 -17.15252 -17.02409 -16.68517 -16.47037 -15.17190 -15.01869 -14.75229 -14.53738 -14.34555 -13.90091 -13.70908 -13.68670 -13.32675 -12.87298 -12.70626 -12.57068 -12.36927 -12.20813 -11.86593 -11.78339 -11.66402 -11.37031 -10.96805 -10.25203 -9.92230 -9.23536 -6.71231 -1.54562 -0.21335 0.26461 0.44639 1.16706 1.28748 1.38286 1.48018 1.72148 1.93879 2.36554 2.73336 3.02776 3.80092 3.90425 3.98549 4.16054 4.25751 4.50324 4.65574 4.71201 4.74797 4.82445 5.07611 5.13540 5.22442 5.30384 5.42047 5.48922 5.63381 5.88409 5.93159 6.22252 6.26074 6.37336 7.74197 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.018384 B = 0.010811 C = 0.007259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.718584 B = 2589.366176 C = 3856.613659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 C -0.080 4.080 4 C 0.073 3.927 5 C -0.411 4.411 6 H 0.101 0.899 7 C 0.061 3.939 8 N -0.765 5.765 9 Si 0.934 3.066 10 H -0.255 1.255 11 H -0.265 1.265 12 H -0.238 1.238 13 C -0.181 4.181 14 C 0.029 3.971 15 C 0.283 3.717 16 N -0.448 5.448 17 C -0.174 4.174 18 C 0.041 3.959 19 N -0.007 5.007 20 O -0.238 6.238 21 O -0.161 6.161 22 H 0.076 0.924 23 H 0.047 0.953 24 H 0.043 0.957 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.314 0.686 28 H 0.122 0.878 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.336 -1.437 -0.422 1.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.127 4.127 3 C -0.084 4.084 4 C 0.069 3.931 5 C -0.435 4.435 6 H 0.119 0.881 7 C -0.168 4.168 8 N -0.384 5.384 9 Si 0.757 3.243 10 H -0.181 1.181 11 H -0.191 1.191 12 H -0.161 1.161 13 C -0.203 4.203 14 C 0.024 3.976 15 C -0.032 4.032 16 N -0.124 5.124 17 C -0.197 4.197 18 C -0.046 4.046 19 N 0.464 4.536 20 O -0.417 6.417 21 O -0.359 6.359 22 H 0.095 0.905 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.109 0.891 26 H 0.100 0.900 27 H 0.127 0.873 28 H 0.139 0.861 29 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.102 0.483 0.317 1.244 hybrid contribution 0.246 -0.119 -0.210 0.345 sum 1.348 0.364 0.107 1.400 Atomic orbital electron populations 1.21541 0.93660 1.02564 1.00611 1.20892 0.97166 0.90663 1.03972 1.20277 1.01452 0.97450 0.89225 1.17164 0.93313 0.90969 0.91671 1.20890 1.15697 1.15079 0.91830 0.88132 1.28160 1.00478 0.94755 0.93428 1.68905 1.35781 1.32138 1.01598 0.85911 0.77999 0.78853 0.81567 1.18059 1.19060 1.16101 1.21341 1.08486 0.94720 0.95721 1.15192 1.02963 0.85812 0.93588 1.25676 0.92589 0.92484 0.92404 1.81159 1.10451 1.12063 1.08724 1.20007 1.08804 0.92860 0.98046 1.19787 1.10760 0.94174 0.79899 1.50679 0.96901 1.01389 1.04638 1.96211 1.62683 1.66260 1.16562 1.96106 1.42487 1.01447 1.95854 0.90496 0.93380 0.93833 0.89063 0.90008 0.87256 0.86059 0.83967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.92 9.36 71.98 0.67 -3.25 15 2 C -0.09 -3.06 4.83 29.85 0.14 -2.92 15 3 C -0.08 -3.04 5.21 -19.27 -0.10 -3.14 15 4 C 0.07 2.86 5.29 -21.31 -0.11 2.75 15 5 C -0.41 -16.77 8.93 24.96 0.22 -16.55 15 6 H 0.10 4.26 6.96 -2.91 -0.02 4.24 15 7 C 0.06 2.42 5.64 87.20 0.49 2.91 15 8 N -0.77 -30.98 13.89 23.21 0.32 -30.66 15 9 Si 0.93 32.19 24.48 68.60 1.68 33.87 15 10 H -0.26 -8.60 6.84 99.48 0.68 -7.92 15 11 H -0.26 -8.61 7.11 99.48 0.71 -7.90 15 12 H -0.24 -8.42 6.47 99.48 0.64 -7.78 15 13 C -0.18 -6.83 6.74 23.12 0.16 -6.67 15 14 C 0.03 1.04 5.72 -21.42 -0.12 0.92 15 15 C 0.28 10.06 15.32 88.33 1.35 11.41 15 16 N -0.45 -16.54 18.54 19.00 0.35 -16.19 15 17 C -0.17 -6.34 9.30 22.79 0.21 -6.13 15 18 C 0.04 1.56 6.84 36.28 0.25 1.81 15 19 N -0.01 -0.26 4.98 -46.70 -0.23 -0.50 15 20 O -0.24 -9.70 19.14 3.53 0.07 -9.63 15 21 O -0.16 -6.09 14.15 3.50 0.05 -6.04 15 22 H 0.08 2.02 8.14 -2.39 -0.02 2.00 15 23 H 0.05 1.51 8.14 -2.38 -0.02 1.50 15 24 H 0.04 1.41 6.80 -2.39 -0.02 1.39 15 25 H 0.09 3.10 5.61 -2.39 -0.01 3.09 15 26 H 0.08 2.76 6.50 -2.39 -0.02 2.75 15 27 H 0.31 11.18 8.27 -92.70 -0.77 10.42 15 28 H 0.12 4.46 4.12 -2.91 -0.01 4.45 15 29 H 0.14 4.88 7.57 -2.91 -0.02 4.86 15 Total: -1.00 -43.46 260.88 6.53 -36.92 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 1.13 Total: 11.08 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 3.17 Total: -18.86 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.44 Total: -47.35 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.12 Total: -15.67 kcal Atomic # 14 Polarization: 32.19 SS G_CDS: 1.68 Total: 33.87 kcal Total: -43.46 6.53 -36.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147591861.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.393 kcal (2) G-P(sol) polarization free energy of solvation -43.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds