Wall clock time and date at job start Mon Mar 30 2020 06:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99777 * 2 1 4 4 H 1.48500 * 109.47228 * 239.99979 * 3 2 1 5 5 H 1.48501 * 109.47388 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47052 * 119.99901 * 3 2 1 7 7 C 1.37872 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99946 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99963 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.46993 * 179.97438 * 9 7 2 11 11 C 1.35796 * 116.99908 * 179.97438 * 10 9 7 12 12 C 1.38571 * 120.13330 * 0.02562 * 11 10 9 13 13 C 1.38185 * 120.08586 * 179.97438 * 12 11 10 14 14 C 1.38443 * 120.35158 * 359.97438 * 13 12 11 15 15 C 1.37917 * 120.27478 * 359.97438 * 14 13 12 16 16 C 1.39559 * 119.90819 * 0.02562 * 15 14 13 17 17 C 1.47717 * 120.17808 * 179.97438 * 16 15 14 18 18 N 1.31295 * 126.39205 * 180.02562 * 17 16 15 19 19 N 1.28661 * 109.25372 * 179.97438 * 18 17 16 20 20 C 1.30344 * 109.53676 * 359.97438 * 19 18 17 21 21 O 1.34467 * 107.64046 * 359.77328 * 20 19 18 22 22 H 0.97002 * 119.99873 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47273 * 59.99661 * 9 7 2 24 24 H 1.08997 * 109.46853 * 299.99823 * 9 7 2 25 25 H 1.08004 * 119.95950 * 359.97438 * 12 11 10 26 26 H 1.07989 * 119.82144 * 179.69812 * 13 12 11 27 27 H 1.07998 * 119.86299 * 180.02562 * 14 13 12 28 28 H 1.08002 * 120.04555 * 180.02562 * 15 14 13 29 29 H 1.08002 * 126.17799 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 8 2.1797 -3.5853 -0.0027 11 6 1.6607 -4.8401 -0.0033 12 6 0.2874 -5.0249 -0.0034 13 6 -0.2397 -6.3023 -0.0046 14 6 0.5978 -7.4046 -0.0060 15 6 1.9668 -7.2377 -0.0070 16 6 2.5112 -5.9527 -0.0058 17 6 3.9766 -5.7670 -0.0062 18 7 4.6166 -4.6206 -0.0048 19 7 5.8840 -4.8422 -0.0052 20 6 6.1018 -6.1273 -0.0063 21 8 4.9064 -6.7432 -0.0015 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5563 -0.8919 24 1 0.6241 -2.5574 0.8880 25 1 -0.3720 -4.1695 -0.0027 26 1 -1.3106 -6.4413 0.0002 27 1 0.1773 -8.3994 -0.0073 28 1 2.6167 -8.1003 -0.0085 29 1 7.0678 -6.6102 -0.0072 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154457923.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:56 Heat of formation + Delta-G solvation = 29.999813 kcal Electronic energy + Delta-G solvation = -16909.546107 eV Core-core repulsion = 13993.500939 eV Total energy + Delta-G solvation = -2916.045168 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.78689 -39.57683 -36.83093 -35.80863 -32.97209 -32.47020 -30.01919 -29.28951 -27.46648 -24.28101 -23.77576 -23.01884 -21.37187 -21.12673 -18.09291 -17.10357 -16.96887 -16.51423 -15.95610 -15.51615 -14.81577 -14.72352 -14.41674 -14.28668 -13.62383 -12.83257 -12.38845 -12.07165 -12.01638 -11.54456 -11.38395 -10.98741 -10.96871 -10.84248 -10.57003 -10.28139 -10.16638 -10.08724 -9.27315 -8.58063 -8.53880 -7.62875 -6.21033 -4.23027 0.77051 1.68420 1.92802 2.53134 2.87898 3.32224 3.33670 3.38739 3.99624 4.04177 4.15847 4.44999 4.73354 5.00461 5.16786 5.19071 5.32317 5.42787 5.58905 5.76568 5.79039 5.83759 6.04796 6.44545 6.50430 6.63906 6.81590 6.98222 7.10362 7.73704 7.96121 8.37763 8.66119 8.90285 9.41800 10.90380 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.020817 B = 0.007267 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.736928 B = 3852.282071 C = 5181.873841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.060 3.940 3 Si 0.914 3.086 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.075 0.925 9 C 0.188 3.812 10 O -0.279 6.279 11 C 0.205 3.795 12 C -0.217 4.217 13 C -0.050 4.050 14 C -0.184 4.184 15 C -0.046 4.046 16 C -0.094 4.094 17 C 0.227 3.773 18 N -0.246 5.246 19 N -0.288 5.288 20 C 0.117 3.883 21 O -0.235 6.235 22 H 0.267 0.733 23 H 0.024 0.976 24 H 0.024 0.976 25 H 0.145 0.855 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.130 0.870 29 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.284 -15.681 -0.018 16.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.141 4.141 3 Si 0.740 3.260 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.093 0.907 9 C 0.115 3.885 10 O -0.188 6.188 11 C 0.153 3.847 12 C -0.235 4.235 13 C -0.069 4.069 14 C -0.202 4.202 15 C -0.066 4.066 16 C -0.097 4.097 17 C 0.020 3.980 18 N -0.093 5.093 19 N -0.135 5.135 20 C -0.113 4.113 21 O -0.114 6.114 22 H 0.076 0.924 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.163 0.837 26 H 0.145 0.855 27 H 0.144 0.856 28 H 0.147 0.853 29 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 3.591 -14.137 -0.013 14.586 hybrid contribution 0.093 -0.416 0.003 0.426 sum 3.683 -14.553 -0.010 15.012 Atomic orbital electron populations 1.69938 1.06107 1.27661 1.50015 1.24908 0.95021 0.99483 0.94730 0.86295 0.79239 0.81295 0.79143 1.19807 1.21121 1.19814 1.20955 0.94599 0.88337 1.51646 0.90692 1.20806 0.88675 0.81986 0.96988 1.86395 1.38360 1.10908 1.83177 1.19147 0.90903 0.86350 0.88334 1.21472 0.93921 0.99205 1.08930 1.21163 0.99939 0.91810 0.94013 1.20787 0.92647 0.98930 1.07826 1.20913 0.95662 0.94307 0.95699 1.16493 0.82945 0.93040 1.17188 1.25511 0.92299 0.81206 0.98995 1.75219 0.96811 1.20956 1.16357 1.74457 1.09524 1.14222 1.15256 1.29539 0.89595 0.89756 1.02390 1.84834 1.16369 1.39718 1.70527 0.92367 0.95800 0.95793 0.83713 0.85512 0.85609 0.85259 0.72685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.03 13.29 55.43 0.74 -25.30 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 3 Si 0.91 21.91 29.54 -169.99 -5.02 16.89 15 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 15 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 7 C -0.52 -15.05 9.43 -34.44 -0.32 -15.38 15 8 H 0.07 2.23 7.81 -52.49 -0.41 1.82 15 9 C 0.19 4.97 4.49 36.01 0.16 5.13 15 10 O -0.28 -6.86 8.46 -19.10 -0.16 -7.02 15 11 C 0.21 4.15 6.69 -38.78 -0.26 3.89 15 12 C -0.22 -3.79 9.03 -39.48 -0.36 -4.15 15 13 C -0.05 -0.69 10.03 -39.53 -0.40 -1.08 15 14 C -0.18 -2.26 10.03 -39.62 -0.40 -2.66 15 15 C -0.05 -0.64 9.72 -39.21 -0.38 -1.02 15 16 C -0.09 -1.68 5.88 -104.86 -0.62 -2.29 15 17 C 0.23 4.23 7.97 -13.91 -0.11 4.12 15 18 N -0.25 -5.33 10.76 32.05 0.34 -4.98 15 19 N -0.29 -5.33 12.22 29.46 0.36 -4.97 15 20 C 0.12 1.54 13.36 52.13 0.70 2.23 15 21 O -0.23 -3.50 10.67 3.84 0.04 -3.46 15 22 H 0.27 7.27 8.31 -40.82 -0.34 6.94 15 23 H 0.02 0.65 7.66 -51.93 -0.40 0.25 15 24 H 0.02 0.65 7.66 -51.93 -0.40 0.25 15 25 H 0.15 2.64 6.30 -52.48 -0.33 2.31 15 26 H 0.13 1.34 8.06 -52.49 -0.42 0.91 15 27 H 0.13 1.14 8.06 -52.49 -0.42 0.72 15 28 H 0.13 1.44 7.93 -52.49 -0.42 1.02 15 29 H 0.26 1.63 8.06 -52.49 -0.42 1.20 15 LS Contribution 268.20 15.07 4.04 4.04 Total: -1.00 -33.29 268.20 -4.10 -37.39 By element: Atomic # 1 Polarization: -0.63 SS G_CDS: -2.36 Total: -2.99 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -2.08 Total: -9.59 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 1.44 Total: -35.25 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -0.12 Total: -10.49 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.29 -4.10 -37.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154457923.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.388 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds